BAC Information

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BAC

Clone NameB6Ng01-075M11
Chromosome11 (Build37)
Map Location 64,949,926 - 65,101,881
singlet/doubletdoublet
Overlap geneAU040829, 1700086D15Rik, LOC100041790, Myocd
Upstream geneEG544785, Hs3st3a1, LOC626959, Elac2
Downstream geneMap2k4, Zkscan6, Dnahc9, Gm879
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075M11.bB6Ng01-075M11.g
ACCDH892239DH892240
length9651,055
definitionDH892239|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M11, 5' end.DH892240|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,949,926 - 64,950,737)(65,100,811 - 65,101,881)
sequence
gaattcaagtgggaagacccacccaccatgggagattctggactgtataa
gggtggagaaattggactaaatactagcctgtatgcacctgctgctctct
tcctctaactgcagacgtaacgttacttctgtcttcactgccctactatc
atggatctaacgttgtaatgtatgctaaaataaatcttccttacttttaa
gttgtttttgtcagattattttatcacatcaacaggaaaaaaaaaaaaaa
aaactaggacagaggctaagtttccccaacagccatctgcaaactggaga
accaatggcaccaggcaagcacaagtctccaattcttacaaccaaagaac
ttagtgtgtgacttttagttagaggttgaagttctgaggactctagagca
tcaagctgctaataaaattcgtggggtccaaatggaagaaaaatctgggg
tctggggtctgaaggcaggagggaaaaagtggccccattcaagaagagag
aatttacatcccctgtgccttccccatccaggtcctcagacaataactca
aacgctaatcccttccaggaacatcctcatagatgccaaaacacgatgct
tacaagctacctgagtatgccctcgtccagtcaagttgatgtctcaaagt
aagcatcatatctatgtcaaagcttcagttttctgggcagtacaaggtct
ctatgaaagaaagatgacagagaagtcttttagaagttagaaaagaaaaa
atttacttcctgttcaggagactgaaaatgcattctttttgtcagaaggc
aaatacagaggcagcaatcagggcccattgagttgggttgataaagaagt
cacgagggggggggcgaggataccttaacattgctgagggaagccaaagt
aggcagccctgttaaatctgctaaaggttaaacactagaaatagaattgc
atatgtccagcccta
gaattctcatacccatcacacagccaccacataaagatgaaaataaaagc
aacacacagacacacacacacacacacacacacacacacacacacacaca
cacacacacacacagtctggaggctcacccattcaatcaacaaacttcaa
aagagacttgaaatgtgccctgagtcaggccagttagataacaggtcacc
tacaaagaggtataaactcatggccactctctctgaaactgggacattaa
tgcttttcattgtccccctggtttcagactttgatcctcacagtcactca
gggtaatagcaagaatacatcttttatcttgtcattttcaaagttggcaa
gaatccatccacacatcacttccacgttattgttaatggattcggccgtt
catgttgccaatcggacagaatctagaagcactgtgagaccacgtgcagt
gcaggcttgtgtgtggaagcggggatggtgctgatgctgttaattgaggt
ggaaagacttggccactgttactggtgaattgcatagctaagatcatcct
ctgtgagagctggacaccaggctgtctgcattcactatcctttccttctg
tacaaatgatatgtgaccaggtgcttcgaactcctactgccgtttacttc
ccatcatgctttgcaactctcaatggaagctggaaaaaacccattctcct
aagtcactttggtctgagaatttcatcaccacaataggggaaaaaaatgg
agtttagattcatgcaataacactgtactgcctcagatcttcccatttct
tcaaaagaagagtggaccagtgtgactgttggctgggcttctcttccact
gtcttgctgaagctgaagtatacttctgtgatcaagactcatccaaggct
cagcgaaccccctgcagcatgggggaggtccgaaaaccgtcccgtcctcc
gataggcctgcaacaggttcacgggtgctgagcgtgggcagaacatctgt
cagcaaccacttcccaggaattcatccccagtctccccggactcaaactg
aggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_64949926_64950737
seq2: B6Ng01-075M11.b_208_1010

seq1  TTGTAATGTATGCTAAAATAAATCTTCCTTACTTTTAAGTTGTTTTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATGTATGCTAAAATAAATCTTCCTTACTTTTAAGTTGTTTTTGTC  50

seq1  AGATTATTTTATCACATCAACAGGAAAAAAAAAAAAAAAAACTAGGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTTTATCACATCAACAGGAAAAAAAAAAAAAAAAACTAGGACAG  100

seq1  AGGCTAAGTTTCCCCAACAGCCATCTGCAAACTGGAGAACCAATGGCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAGTTTCCCCAACAGCCATCTGCAAACTGGAGAACCAATGGCACC  150

seq1  AGGCAAGCACAAGTCTCCAATTCTTACAACCAAAGAACTTAGTGTGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGCACAAGTCTCCAATTCTTACAACCAAAGAACTTAGTGTGTGAC  200

seq1  TTTTAGTTAGAGGTTGAAGTTCTGAGGACTCTAGAGCATCAAGCTGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTAGAGGTTGAAGTTCTGAGGACTCTAGAGCATCAAGCTGCTAA  250

seq1  TAAAATTCGTGGGGTCCAAATGGAAGAAAAATCTGGGGTCTGGGGTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCGTGGGGTCCAAATGGAAGAAAAATCTGGGGTCTGGGGTCTGA  300

seq1  AGGCAGGAGGGAAAAAGTGGCCCCATTCAAGAAGAGAGAATTTACATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGGGAAAAAGTGGCCCCATTCAAGAAGAGAGAATTTACATCCC  350

seq1  CTGTGCCTTCCCCATCCAGGTCCTCAGACAATAACTCAAACGCTAATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCTTCCCCATCCAGGTCCTCAGACAATAACTCAAACGCTAATCCC  400

seq1  TTCCAGGAACATCCTCATAGATGCCAAAACACGATGCTTACAAGCTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAACATCCTCATAGATGCCAAAACACGATGCTTACAAGCTACCT  450

seq1  GAGTATGCCCTCGTCCAGTCAAGTTGATGTCTCAAAGTAAGCATCATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGCCCTCGTCCAGTCAAGTTGATGTCTCAAAGTAAGCATCATATC  500

seq1  TATGTCAAAGCTTCAGTTTTCTTGGGCAGTACAAGGTCTCTATGAAAGAA  550
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TATGTCAAAGCTTCAGTTTTC-TGGGCAGTACAAGGTCTCTATGAAAGAA  549

seq1  AGATGACAGAGAAGTC-TTTAGAAAGTAGAAAAGAAAAAATTTAC-TCCT  598
      |||||||||||||||| |||||||  ||||||||||||||||||| ||||
seq2  AGATGACAGAGAAGTCTTTTAGAAGTTAGAAAAGAAAAAATTTACTTCCT  599

seq1  GTTCAGGAGACTGAAAATGCATTC-TTTTGTCAGAAGGCACATACAGAGG  647
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  GTTCAGGAGACTGAAAATGCATTCTTTTTGTCAGAAGGCAAATACAGAGG  649

seq1  CAGCAATCAGGGCCCATTTGAGTT-GGATGATAAAGAAGTCACGAGGGGG  696
      |||||||||||||||| ||||||| || |||||||||||||||||  |||
seq2  CAGCAATCAGGGCCCA-TTGAGTTGGGTTGATAAAGAAGTCACGA--GGG  696

seq1  GGGGGGCGAGGATACCTTACACACTGCTGAGGGGAATGCAAAGTAGGCAG  746
      ||||||||||||||||||| ||| |||||| |||||  ||||||||||||
seq2  GGGGGGCGAGGATACCTTA-ACATTGCTGA-GGGAAGCCAAAGTAGGCAG  744

seq1  CCACTGTGAAAATCAGCATAAAGGTTAAAACAACTAGAAATAGAATTGCC  796
      || ||||  ||||| || |||||||||||   |||||||||||||||| |
seq2  CC-CTGT-TAAATCTGC-TAAAGGTTAAA--CACTAGAAATAGAATTG-C  788

seq1  ATATGGTCCAGCCCTA  812
      |||| |||||||||||
seq2  ATAT-GTCCAGCCCTA  803

seq1: chr11_65100811_65101881
seq2: B6Ng01-075M11.g_71_1125 (reverse)

seq1  AGCCTCCAGTTTTGAGTCCGGGGAAGACTGGGGATGAATTCACTGGGAAG  50
      ||||| ||| ||||||||||||| ||||||||||||||||| ||||||||
seq2  AGCCT-CAG-TTTGAGTCCGGGG-AGACTGGGGATGAATTC-CTGGGAAG  46

seq1  TGTGTTGGCTGGACAGATTGTTCTGCCCACGCTCAGCAACCCGTGAACCT  100
      || ||| ||| |||||| ||||||||||||||||||| ||||||||||||
seq2  TG-GTT-GCT-GACAGA-TGTTCTGCCCACGCTCAGC-ACCCGTGAACCT  91

seq1  GTCTGCAGGGCCTCTCGGAAGGAC-GGACGGTTTTCAGACCTCCCCCATG  149
      || |||| ||||| |||| ||||| ||||||||||| |||||||||||||
seq2  GT-TGCA-GGCCTATCGG-AGGACGGGACGGTTTTCGGACCTCCCCCATG  138

seq1  CTGCAGGGGGTTCTGCTGAGCCTTGGATGAGTCTTGATCACAGAAGTATA  199
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGGGGTTC-GCTGAGCCTTGGATGAGTCTTGATCACAGAAGTATA  187

seq1  CTTCAGCTTCAGCAAGACAAGTGGAAGAGGAAGCCCAGCCAACAGTCACA  249
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  CTTCAGCTTCAGCAAGAC-AGTGGAAGA-GAAGCCCAGCCAACAGTCACA  235

seq1  CTGGTCCACTCTTCTTTTGAAGAAATGGGAAGATCTGAGGCAAGTACAGT  299
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGGTCCACTCTTCTTTTGAAGAAATGGGAAGATCTGAGGC-AGTACAGT  284

seq1  GTTTATTGCATGAATCTAAACTCCATTTTTTTCCCCTATTGTGGTGATGA  349
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TTATTGCATGAATCTAAACTCCATTTTTTTCCCCTATTGTGGTGATGA  333

seq1  AATTCTCAGACCAAAGTGACTTAGGAGAATGGGTTTATTCCAGCTTCCAT  399
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATTCTCAGACCAAAGTGACTTAGGAGAATGGGTTTTTTCCAGCTTCCAT  383

seq1  TGAGAGTTGCAAAGCATGATGGGAAGTAAACGGCAGTAGGAGTTCGAAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTGCAAAGCATGATGGGAAGTAAACGGCAGTAGGAGTTCGAAGC  433

seq1  ACCTGGTCACATATCATTTGTACAGAAGGAAAGGATAGTGAATGCAGACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTCACATATCATTTGTACAGAAGGAAAGGATAGTGAATGCAGACA  483

seq1  GCCTGGTGTCCAGCTCTCACAGAGGATGATCTTAGCTATGCAATTCACCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTGTCCAGCTCTCACAGAGGATGATCTTAGCTATGCAATTCACCA  533

seq1  GTAACAGTGGCCAAGTCTTTCCACCTCAATTAACAGCATCAGCACCATCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGTGGCCAAGTCTTTCCACCTCAATTAACAGCATCAGCACCATCC  583

seq1  CCGCTTCCACACACAAGCCTGCACTGCACGTGGTCTCACAGTGCTTCTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTTCCACACACAAGCCTGCACTGCACGTGGTCTCACAGTGCTTCTAG  633

seq1  ATTCTGTCCGATTGGCAACATGAACGGCCGAATCCATTAACAATAACGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCCGATTGGCAACATGAACGGCCGAATCCATTAACAATAACGTG  683

seq1  GAAGTGATGTGTGGATGGATTCTTGCCAACTTTGAAAATGACAAGATAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGATGTGTGGATGGATTCTTGCCAACTTTGAAAATGACAAGATAAA  733

seq1  AGATGTATTCTTGCTATTACCCTGAGTGACTGTGAGGATCAAAGTCTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATTCTTGCTATTACCCTGAGTGACTGTGAGGATCAAAGTCTGAA  783

seq1  ACCAGGGGGACAATGAAAAGCATTAATGTCCCAGTTTCAGAGAGAGTGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGGGACAATGAAAAGCATTAATGTCCCAGTTTCAGAGAGAGTGGC  833

seq1  CATGAGTTTATACCTCTTTGTAGGTGACCTGTTATCTAACTGGCCTGACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTTATACCTCTTTGTAGGTGACCTGTTATCTAACTGGCCTGACT  883

seq1  CAGGGCACATTTCAAGTCTCTTTTGAAGTTTGTTGATTGAATGGGTGAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCACATTTCAAGTCTCTTTTGAAGTTTGTTGATTGAATGGGTGAGC  933

seq1  CTCCAGACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  983

seq1  TGTGTGTGTGTGTCTGTGTGTTGCTTTTATTTTCATCTTTATGTGGTGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTCTGTGTGTTGCTTTTATTTTCATCTTTATGTGGTGGC  1033

seq1  TGTGTGATGGGTATGAGAATTC  1071
      ||||||||||||||||||||||
seq2  TGTGTGATGGGTATGAGAATTC  1055