BAC Information

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BAC

Clone NameB6Ng01-076F02
Chromosome11 (Build37)
Map Location 23,953,116 - 24,061,708
singlet/doubletdoublet
Overlap geneA830031A19Rik, LOC100042256, Bcl11a
Upstream geneLOC100042875, Xpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg
Downstream geneLOC100042282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076F02.bB6Ng01-076F02.g
ACCDH892620DH892621
length1,241223
definitionDH892620|Mus musculus domesticus DNA, BAC clone: B6Ng01-076F02, 5' end.DH892621|Mus musculus domesticus DNA, BAC clone: B6Ng01-076F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,060,457 - 24,061,708)(23,953,116 - 23,953,338)
sequence
gaattcatcaattatatgattcctccatttagcaagtcagaaagaaaagc
tgccaaggtcttctcaggagccccaaacattcatattccaaagcaagcca
gcctcgctcaagcgcttgtctaaataatggactcctgccctgaccttgta
atttactttacaatgcatttataatctcactcaatatagcccactcctgg
ggaaatctccttaacaagattagatggtaagataccaaaattgggtttca
aacatttgtctaatgtggagggaggaagaaaggcagagattttgaaagaa
aatgctgacattagaatcacattatctgcctcttttcttcaaagagaaat
aaaaagcttcaatgagagtattttcatatttttttgttgttgttgaacaa
tgacttgggctctaaatggtcaggaaaaaaatctggttccaacgactgtg
atcctccatagcgttcctctttgcctccctaggactctggatcctgctcg
tgtatttagcctaacaatcagagggctgtaacgaaggagtttcactcagc
tgaagcaaacccttaatactttcatcactccaaatgccttaaaatcattt
ttgacccttataatctcttaaagcccgggaatgggctgtaattagcaatg
acggtctcaaatgtgccaagatggagcccctgatacgagccaaactctgg
gcactctaagcacatggagagtctcatctgttagcttcccatgaggctta
acgaaggtccattttattttgctttctaaaaatttcttttccagagccag
ttgtgtggttgtgctacagaaggttaacactacggcgctgtctttcccct
cacacgtggagccagaggaaacagcttttgaacttataatgagcacacac
acacagccttcgctatcgccttcccatgttcccatcaactagatattcta
gatcacaagggcacctactgtatcacgatgtcatgactgaagattacacg
gaagagccgctcagagctggtattattaccagtccactaatagcagcgat
gcattgccatttcacccacgaaatctgcatttctctctgctcatgctggc
gcaccacactgtattacggtgctcacaggattctaaatcttaaactgcgt
catcaataaatggtttactcgctgccaattgtaattactggtcctaactc
ttgatgttagaaagaccagacgtgatttcctctcgcgtggc
aaaaccagtttctgcctccaatgcttttgtccagccagtagaaagaccca
ggcccagattaacttttaaacatatctgttctttctactcatcagggttg
gaggcacacaagtcatgttgtcaaacaacagccttctaagagtgtctgcc
cttcactcacacatgctttgaaatgaccccaggtcagggaatgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_24060457_24061708
seq2: B6Ng01-076F02.b_44_1284 (reverse)

seq1  GCCACGC---AGGAAATCAATTCTGGTCTTTCTAAACCATCAAAGATGTT  47
      |||||||   |||||||||  ||||||||||||||  |||| |||| |||
seq2  GCCACGCGAGAGGAAATCACGTCTGGTCTTTCTAA--CATC-AAGA-GTT  46

seq1  ATGAACAAAGTAATTTCACAAATTGCAGCGAGTAACACATTTATTGATGA  97
      | || |  |||||||  |||| | |||||||||||  |||||||||||||
seq2  AGGACC--AGTAATT--ACAATTGGCAGCGAGTAAACCATTTATTGATGA  92

seq1  CTGCAGTTTAGGAATTTAGAAT-CTGTGAGCACCGTAATACAGTGTGGTG  146
      | |||||||| | ||||||||| |||||||||||||||||||||||||||
seq2  C-GCAGTTTAAG-ATTTAGAATCCTGTGAGCACCGTAATACAGTGTGGTG  140

seq1  CGCCAGCATGAGCAGAGAGAAATGCAGATTTCGT-GGTGAAATGGCAATG  195
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CGCCAGCATGAGCAGAGAGAAATGCAGATTTCGTGGGTGAAATGGCAATG  190

seq1  CATCGCTTGCTATTAGTGGACTGGTAATAATTACCAGCTTCTGAGCGGCT  245
      |||||| ||||||||||||||||||||||| ||||||| |||||||||||
seq2  CATCGC-TGCTATTAGTGGACTGGTAATAA-TACCAGC-TCTGAGCGGCT  237

seq1  CTTTCCGTGTAATCTTCAGTCATTGACATCGTGATTACAGTAGGTGCCCT  295
      | |||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  C-TTCCGTGTAATCTTCAGTCA-TGACATCGTGA-TACAGTAGGTGCCCT  284

seq1  TGTGATCTAGAATATCTAGTTGATGGGAACATGGGAAGGCGATAGCGAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTAGAATATCTAGTTGATGGGAACATGGGAAGGCGATAGCGAAG  334

seq1  GCTGTGTGTGTGTGCTCATTATAAGTTCAAAAGCTGTTTCCTCTGGCTCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGTGTGTGCTCATTATAAGTTCAAAAGCTGTTTCCTCTGGCTCC  384

seq1  ACGTGTGAGGGGAAAGACAGCGCCGTAGTGTTAACCTTCTGTAGCACAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGAGGGGAAAGACAGCGCCGTAGTGTTAACCTTCTGTAGCACAAC  434

seq1  CACACAACTGGCTCTGGAAAAGAAATTTTTAGAAAGCAAAATAAAATGGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAACTGGCTCTGGAAAAGAAATTTTTAGAAAGCAAAATAAAATGGA  484

seq1  CCTTCGTTAAGCCTCATGGGAAGCTAACAGATGAGACTCTCCATGTGCTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGTTAAGCCTCATGGGAAGCTAACAGATGAGACTCTCCATGTGCTT  534

seq1  AGAGTGCCCAGAGTTTGGCTCGTATCAGGGGCTCCATCTTGGCACATTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCCCAGAGTTTGGCTCGTATCAGGGGCTCCATCTTGGCACATTTG  584

seq1  AGACCGTCATTGCTAATTACAGCCCATTCCCGGGCTTTAAGAGATTATAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGTCATTGCTAATTACAGCCCATTCCCGGGCTTTAAGAGATTATAA  634

seq1  GGGTCAAAAATGATTTTAAGGCATTTGGAGTGATGAAAGTATTAAGGGTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAAAAATGATTTTAAGGCATTTGGAGTGATGAAAGTATTAAGGGTT  684

seq1  TGCTTCAGCTGAGTGAAACTCCTTCGTTACAGCCCTCTGATTGTTAGGCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAGCTGAGTGAAACTCCTTCGTTACAGCCCTCTGATTGTTAGGCT  734

seq1  AAATACACGAGCAGGATCCAGAGTCCTAGGGAGGCAAAGAGGAACGCTAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACGAGCAGGATCCAGAGTCCTAGGGAGGCAAAGAGGAACGCTAT  784

seq1  GGAGGATCACAGTCGTTGGAACCAGATTTTTTTCCTGACCATTTAGAGCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATCACAGTCGTTGGAACCAGATTTTTTTCCTGACCATTTAGAGCC  834

seq1  CAAGTCATTGTTCAACAACAACAAAAAAATATGAAAATACTCTCATTGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCATTGTTCAACAACAACAAAAAAATATGAAAATACTCTCATTGAA  884

seq1  GCTTTTTATTTCTCTTTGAAGAAAAGAGGCAGATAATGTGATTCTAATGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTATTTCTCTTTGAAGAAAAGAGGCAGATAATGTGATTCTAATGT  934

seq1  CAGCATTTTCTTTCAAAATCTCTGCCTTTCTTCCTCCCTCCACATTAGAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTTCTTTCAAAATCTCTGCCTTTCTTCCTCCCTCCACATTAGAC  984

seq1  AAATGTTTGAAACCCAATTTTGGTATCTTACCATCTAATCTTGTTAAGGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTGAAACCCAATTTTGGTATCTTACCATCTAATCTTGTTAAGGA  1034

seq1  GATTTCCCCAGGAGTGGGCTATATTGAGTGAGATTATAAATGCATTGTAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCCCAGGAGTGGGCTATATTGAGTGAGATTATAAATGCATTGTAA  1084

seq1  AGTAAATTACAAGGTCAGGGCAGGAGTCCATTATTTAGACAAGCGCTTGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATTACAAGGTCAGGGCAGGAGTCCATTATTTAGACAAGCGCTTGA  1134

seq1  GCGAGGCTGGCTTGCTTTGGAATATGAATGTTTGGGGCTCCTGAGAAGAC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGCTGGCTTGCTTTGGAATATGAATGTTTGGGGCTCCTGAGAAGAC  1184

seq1  CTTGGCAGCTTTTCTTTCTGACTTGCTAAATGGAGGAATCATATAATTGA  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAGCTTTTCTTTCTGACTTGCTAAATGGAGGAATCATATAATTGA  1234

seq1  TGAATTC  1252
      |||||||
seq2  TGAATTC  1241

seq1: chr11_23953116_23953338
seq2: B6Ng01-076F02.g_73_295

seq1  AAAACCAGTTTCTGCCTCCAATGCTTTTGTCCAGCCAGTAGAAAGACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGTTTCTGCCTCCAATGCTTTTGTCCAGCCAGTAGAAAGACCCA  50

seq1  GGCCCAGATTAACTTTTAAACATATCTGTTCTTTCTACTCATCAGGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGATTAACTTTTAAACATATCTGTTCTTTCTACTCATCAGGGTTG  100

seq1  GAGGCACACAAGTCATGTTGTCAAACAACAGCCTTCTAAGAGTGTCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACACAAGTCATGTTGTCAAACAACAGCCTTCTAAGAGTGTCTGCC  150

seq1  CTTCACTCACACATGCTTTGAAATGACCCCAGGTCAGGGAATGTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTCACACATGCTTTGAAATGACCCCAGGTCAGGGAATGTGTGTGT  200

seq1  GTGTGTGTGTGTGTGTGTGTGTG  223
      |||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTG  223