BAC Information

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BAC

Clone NameB6Ng01-076M24
Chromosome11 (Build37)
Map Location 100,639,401 - 100,761,046
singlet/doubletdoublet
Overlap geneStat5b, Stat5a, Stat3
Upstream geneLOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc
Downstream genePtrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076M24.bB6Ng01-076M24.g
ACCDH892968DH892969
length1,110542
definitionDH892968|Mus musculus domesticus DNA, BAC clone: B6Ng01-076M24, 5' end.DH892969|Mus musculus domesticus DNA, BAC clone: B6Ng01-076M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,759,947 - 100,761,046)(100,639,401 - 100,639,947)
sequence
gaattcacagtgactcacctgcctgtgctccccagtgctaggattaaagg
tatctgacaccaagtctggctaagaagaacttgtaaaatagtgttctgaa
ataagataaagacagaaatgtcataatataaaaagatggcctgtcagaga
caggcagcagtggtcacgtgaggatagcatttccagctgccttgtgggag
gtggtgtcagtttttggtaacaacatacctttctggaaaacccagcgtgg
ctccgataataaggaaattcaccacccgtgtaactggaaatgcagttggg
gcaagtacctaaggatgaggctggtgactcacaggtgtcttcaggaaccc
tgggtcttccatgccatccttaccgtgccatccttaccgtgccagctgta
gacaggttcccttccaggtggtctcatggctgtggacagaagatcagcct
aggctattgcctccttggtctggctgagaacaggcctttaatcccagcac
ccaggaggcagaagcaggtgatctctgagttcaggtctacagagcaagtt
ccacgacagccaggagggctacacagagcgctgtctcggaaagccgacaa
aacagacaaggcagaccccgtcttcacctgctctgtggcttcctctgttc
tgatgaatgcagtgatcggggttccctggagatagatggctctgccatcc
cttactgagagaatggagctttccttaggaagggaaagaagctgtggtta
ggcccccagctaaggctactgtttaagtgcatacagagttgtgtttcaca
ccggaaaatgtaactgagcatcgaaaggcatgtttccatcagagtaggtt
ctggaaagaaagagggggctctaatctcagcttttattaacccttgtctg
tgttctttacagagactctgggggatgttgctgccctcagagggtaagtt
gggccctcctttgttcctttctcatccaactttaccctctggctactcag
cgctcactggtgtgttggtttttctccatgatttaggtctcggaatttaa
cattcctgggccacgaacacaaaagtgatgaacatgggagggatgtctaa
ccaccggcag
actctgtagaccaggctggtctcaaactcagaaatctgcctgcctcttat
tcccaagtgctgggattaaaggcgtgtttaattggaattaactggaattg
gctttgaataccttgctggccttgaactcaccaccttcttctgcttcctg
agtgctgggattaaagataaggggctgttttttttctacaccactgggtc
tccagtcgtccttttttgagataaggttaaggatagccttgaacttttga
tccccatgctaggattacaggaatgtaccatcacgcctagtttatagtag
ggtgtgtttgctaatttttttaagaatattttttgggggagttattatta
ttatttatacagcattctgcctgcaggccagaagagggcatcagatccca
ttacagatggttgtgagccaccatatggttggttgctgggaattgaactc
aggacctctggaagagcagtcagtgctcttaaccgctgagccatctctcc
aggcccttgttagtggcttttaaaataagtgtgctttgtagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_100759947_100761046
seq2: B6Ng01-076M24.b_44_1153 (reverse)

seq1  CTGCC-GTTGTTAGAC-TCC--TCCATGTTCATCACTTTTGTGTTCGT-G  45
      ||||| || ||||||| |||   ||||||||||||||||||||||||| |
seq2  CTGCCGGTGGTTAGACATCCCTCCCATGTTCATCACTTTTGTGTTCGTGG  50

seq1  CCCA-GAATGTTAAATTTCCGAGACCTAAATCATGGGAGAAAAACCAACA  94
      |||| |||||||||| |||||||||||||||||| |||||||||||||||
seq2  CCCAGGAATGTTAAA-TTCCGAGACCTAAATCAT-GGAGAAAAACCAACA  98

seq1  CA-CAGTGAGCGCTGAGTAGCCAGAGGGTAAAGTTGGATGAGAAA-GAAC  142
      || |||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACCAGTGAGCGCTGAGTAGCCAGAGGGTAAAGTTGGATGAGAAAGGAAC  148

seq1  AAAAGGAGGCCCAACTTACCCTCTGAGGGCAGCAACAT-CCCCAGAGTCT  191
      ||| |  ||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAGGAGGGCCCAACTTACCCTCTGAGGGCAGCAACATCCCCCAGAGTCT  198

seq1  CTGTAAAGAACACAGACAAGGGTTAATAAAAGCTGAGATTAGAG-CCCCT  240
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGTAAAGAACACAGACAAGGGTTAATAAAAGCTGAGATTAGAGCCCCCT  248

seq1  CTTTCTTTCCAGAACCTACTCTGATGG-AACATGCCTTTCGATGCTCAGT  289
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTTCTTTCCAGAACCTACTCTGATGGAAACATGCCTTTCGATGCTCAGT  298

seq1  TACATTTT-CGGTGTGAAACACAACTCTGTATGCACTTAAACAGTAGCCT  338
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTCCGGTGTGAAACACAACTCTGTATGCACTTAAACAGTAGCCT  348

seq1  TAGCTGGGGGCCTAACCACAGCTTCTTTCCCTTCCTAAGGAAAGCTCCAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGGGGCCTAACCACAGCTTCTTTCCCTTCCTAAGGAAAGCTCCAT  398

seq1  TCTCTCAGTAAGGGATGGCAGAGCCATCTATCTCCAGGGAACCCCGATCA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAGTAAGGGATGGCAGAGCCATCTATCTCCAGGGAACCCCGATCA  448

seq1  CTGCATTCATCAGAACAGAGGAAGCCACAGAGCAGGTGAAGACGGGGTCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTCATCAGAACAGAGGAAGCCACAGAGCAGGTGAAGACGGGGTCT  498

seq1  GCCTTGTCTGTTTTGTCGGCTTTCCGAGACAGCGCTCTGTGTAGCCCTCC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTCTGTTTTGTCGGCTTTCCGAGACAGCGCTCTGTGTAGCCCTCC  548

seq1  TGGCTGTCGTGGAACTTGCTCTGTAGACCTGAACTCAGAGATCACCTGCT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCGTGGAACTTGCTCTGTAGACCTGAACTCAGAGATCACCTGCT  598

seq1  TCTGCCTCCTGGGTGCTGGGATTAAAGGCCTGTTCTCAGCCAGACCAAGG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTGGGTGCTGGGATTAAAGGCCTGTTCTCAGCCAGACCAAGG  648

seq1  AGGCAATAGCCTAGGCTGATCTTCTGTCCACAGCCATGAGACCACCTGGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATAGCCTAGGCTGATCTTCTGTCCACAGCCATGAGACCACCTGGA  698

seq1  AGGGAACCTGTCTACAGCTGGCACGGTAAGGATGGCACGGTAAGGATGGC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACCTGTCTACAGCTGGCACGGTAAGGATGGCACGGTAAGGATGGC  748

seq1  ATGGAAGACCCAGGGTTCCTGAAGACACCTGTGAGTCACCAGCCTCATCC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGACCCAGGGTTCCTGAAGACACCTGTGAGTCACCAGCCTCATCC  798

seq1  TTAGGTACTTGCCCCAACTGCATTTCCAGTTACACGGGTGGTGAATTTCC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTACTTGCCCCAACTGCATTTCCAGTTACACGGGTGGTGAATTTCC  848

seq1  TTATTATCGGAGCCACGCTGGGTTTTCCAGAAAGGTATGTTGTTACCAAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATCGGAGCCACGCTGGGTTTTCCAGAAAGGTATGTTGTTACCAAA  898

seq1  AACTGACACCACCTCCCACAAGGCAGCTGGAAATGCTATCCTCACGTGAC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACACCACCTCCCACAAGGCAGCTGGAAATGCTATCCTCACGTGAC  948

seq1  CACTGCTGCCTGTCTCTGACAGGCCATCTTTTTATATTATGACATTTCTG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTGCCTGTCTCTGACAGGCCATCTTTTTATATTATGACATTTCTG  998

seq1  TCTTTATCTTATTTCAGAACACTATTTTACAAGTTCTTCTTAGCCAGACT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCTTATTTCAGAACACTATTTTACAAGTTCTTCTTAGCCAGACT  1048

seq1  TGGTGTCAGATACCTTTAATCCTAGCACTGGGGAGCACAGGCAGGTGAGT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCAGATACCTTTAATCCTAGCACTGGGGAGCACAGGCAGGTGAGT  1098

seq1  CACTGTGAATTC  1100
      ||||||||||||
seq2  CACTGTGAATTC  1110

seq1: chr11_100639401_100639947
seq2: B6Ng01-076M24.g_71_618

seq1  GAATTCACTCTGTAGACCAGGCTGGTCTCAAACTCAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGTCTCAAACTCAGAAATCTGCCTGCC  50

seq1  TCTTATTCCCAAGTGCTGGGATTAAAGGCGTGTTTAATTGGAATTAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCCCAAGTGCTGGGATTAAAGGCGTGTTTAATTGGAATTAACTG  100

seq1  GAATTGGCTTTGAATACCTTGCTGGCCTTGAACTCACCACCTTCTTCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGCTTTGAATACCTTGCTGGCCTTGAACTCACCACCTTCTTCTGC  150

seq1  TTCCTGAGTGCTGGGATTAAAGATAAGGGGCTGTTTTTTTTCTACACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGTGCTGGGATTAAAGATAAGGGGCTGTTTTTTTTCTACACCAC  200

seq1  TGGGTCTCCAGTCGTCCTTTTTTGAGATAAGGTTAAGGATAGCCTTGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTCCAGTCGTCCTTTTTTGAGATAAGGTTAAGGATAGCCTTGAAC  250

seq1  TTTTGATCCCCATGCTAGGATTACAGGAATGTACCATCACGCCTAGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCCCCATGCTAGGATTACAGGAATGTACCATCACGCCTAGTTTA  300

seq1  TAGTAGGGTGTGTTTGCTAATTTTTTTAAGAATATTTTTTGGGGGAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGGTGTGTTTGCTAATTTTTTTAAGAATATTTTTTGGGGGAGTTA  350

seq1  TTATTATTATTTATACAGCATTCTGCCTGCAGGCCAGAAGAGGGCATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTTATACAGCATTCTGCCTGCAGGCCAGAAGAGGGCATCAG  400

seq1  ATCCCATTACAGATGGTTGTGAGCCACCATATGGTTGGTTGCTGGGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATTACAGATGGTTGTGAGCCACCATATGGTTGGTTGCTGGGAATT  450

seq1  GAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCAT  500

seq1  CTCTCCAGGCCCTTGTTAGTGGCTTTTAAAATAAGTGTGC-TTGTAGC  547
      |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTCTCCAGGCCCTTGTTAGTGGCTTTTAAAATAAGTGTGCTTTGTAGC  548