BAC Information

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BAC

Clone NameB6Ng01-076P07
Chromosome11 (Build37)
Map Location 96,667,695 - 96,668,507
singlet/doubletsinglet
Overlap geneCbx1
Upstream geneEG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, LOC629750
Downstream geneNfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076P07.bB6Ng01-076P07.g
ACCDH893066DH893067
length815413
definitionDH893066|Mus musculus domesticus DNA, BAC clone: B6Ng01-076P07, 5' end.DH893067|Mus musculus domesticus DNA, BAC clone: B6Ng01-076P07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactttgtagaccagctggccttgaactcacagagacctgccctt
agaggggatttttaacagaggaatatctttgaggggatcgtgtgacaaca
cttgcccagtaaatgcttgcatcctctttcctagtttgtttctggaattt
agactttaaaagccccattccctgggtggtccaaaacgggaccacaacgg
ctgatctcaaagtctctttgtgctttgttctacaggaaaaactctgatga
ggctgacctggtccctgccaaggaagccaatgtcaagtgcccacaggttg
tcatatccttctatgaggaaaggctaacgtggcattcctacccctcagag
gatgatgacaaaaaagacgacaagaattagccctgttgagtaccagcccc
tgtcacctctgactgtgggtttcaagggggagggaaggagttatacttgt
cttgacaccatagaggtggcttgagaagatgtcctttgaagagccagcat
agtttgtgtgtcctgcagctgcccaagtgctttaaattgttcaagctgtg
tagtttgcacacccatcccagtggaggggaaagggtaagtgtttcaaggc
aacctgttctgcgctttgctaaggaagcagttggccttccatgaaggaca
aaacctgcagaactggggtgtgggaaagcaaagatactgtcgatcttcaa
agagcatctccacaacccacagccttcttcccgatagtgttaactgcatt
tttacagcctagcatgtgtgtagtttttggctattactggtatattaaat
tgggggtggggaggg
cagatatcctgtgttcactctctttgggatctgggaggcctcactccaag
ccctgaaaagggggaacatcaggggagtctgagactctgggggtgtgtgc
ggtgaggttatcttgagctcctaggtcaagcacggggatgtacctcacaa
ccgtgaaggatgccagatagaaggagtgagcatgtgctggattccagtta
tagaaagatcaaaagtagtaaagaagccacccctaatctataccctttga
agtcagaatacaggctccttcttcttgggggcttaagtaacctgaggggc
cagcacgatgctaggaggctttggtaatggagttgagtgggggttactat
ctgggtgtgtccattttgtgaaaacctctggtgtgtgtgtgtgtgtgtgt
ttggtaggggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96667695_96668507
seq2: B6Ng01-076P07.b_44_858

seq1  GAATTCACTTTGTAGACCAGCTGGCCTTGAACTCACAGAGACCTGCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGCTGGCCTTGAACTCACAGAGACCTGCCCTT  50

seq1  AGAGGGGATTTTTAACAGAGGAATATCTTTGAGGGGATCGTGTGACAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGATTTTTAACAGAGGAATATCTTTGAGGGGATCGTGTGACAACA  100

seq1  CTTGCCCAGTAAATGCTTGCATCCTCTTTCCTAGTTTGTTTCTGGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCAGTAAATGCTTGCATCCTCTTTCCTAGTTTGTTTCTGGAATTT  150

seq1  AGACTTTAAAAGCCCCATTCCCTGGGTGGTCCAAAACGGGACCACAACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTAAAAGCCCCATTCCCTGGGTGGTCCAAAACGGGACCACAACGG  200

seq1  CTGATCTCAAAGTCTCTTTGTGCTTTGTTCTACAGGAAAAACTCTGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTCAAAGTCTCTTTGTGCTTTGTTCTACAGGAAAAACTCTGATGA  250

seq1  GGCTGACCTGGTCCCTGCCAAGGAAGCCAATGTCAAGTGCCCACAGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACCTGGTCCCTGCCAAGGAAGCCAATGTCAAGTGCCCACAGGTTG  300

seq1  TCATATCCTTCTATGAGGAAAGGCTAACGTGGCATTCCTACCCCTCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCCTTCTATGAGGAAAGGCTAACGTGGCATTCCTACCCCTCAGAG  350

seq1  GATGATGACAAAAAAGACGACAAGAATTAGCCCTGTTGAGTACCAGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGACAAAAAAGACGACAAGAATTAGCCCTGTTGAGTACCAGCCCC  400

seq1  TGTCACCTCTGACTGTGGGTTTCAAGGGGGAGGGAAGGAGTTATACTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCTCTGACTGTGGGTTTCAAGGGGGAGGGAAGGAGTTATACTTGT  450

seq1  CTTGACACCATAGAGGTGGCTTGAGAAGATGTCCTTTGAAGAGCCAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACACCATAGAGGTGGCTTGAGAAGATGTCCTTTGAAGAGCCAGCAT  500

seq1  AGTTTGTGTGTCCTGCAGCTGCCCAAGTGCTTTAAATTGTTCAAGCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGTGTCCTGCAGCTGCCCAAGTGCTTTAAATTGTTCAAGCTGTG  550

seq1  TAGTTTGCACACCCATCCCAGTGGAGGGGAAAGGGTAAGTGTTTCAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGCACACCCATCCCAGTGGAGGGGAAAGGGTAAGTGTTTCAAGGC  600

seq1  AACCTGTTCTGCGCTTTGCTAAGGAAGCAGTTGGCCTTCCATGAAGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTTCTGCGCTTTGCTAAGGAAGCAGTTGGCCTTCCATGAAGGACA  650

seq1  AAACCTGCAGAACTGGGGTGTGGGAAAGCAAAGATACTGTCGATCTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGCAGAACTGGGGTGTGGGAAAGCAAAGATACTGTCGATCTTCAA  700

seq1  AGAGCATCTCCACAACCCACAGCCTTCTTCCCGATAGTGTTAACTGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATCTCCACAACCCACAGCCTTCTTCCCGATAGTGTTAACTGCATT  750

seq1  TTTACAGCCTAGCATGTGTGTAGTTTTTGGCTATTACTGGTATATT-AAT  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTACAGCCTAGCATGTGTGTAGTTTTTGGCTATTACTGGTATATTAAAT  800

seq1  TGGGGGT-GGGAGGG  813
      ||||||| |||||||
seq2  TGGGGGTGGGGAGGG  815