BAC Information

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BAC

Clone NameB6Ng01-076P11
Chromosome11 (Build37)
Map Location 74,647,606 - 74,800,416
singlet/doubletdoublet
Overlap geneMnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6
Upstream geneOlfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d
Downstream geneLOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076P11.bB6Ng01-076P11.g
ACCDH893072DH893073
length5471,030
definitionDH893072|Mus musculus domesticus DNA, BAC clone: B6Ng01-076P11, 5' end.DH893073|Mus musculus domesticus DNA, BAC clone: B6Ng01-076P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,799,864 - 74,800,416)(74,647,606 - 74,648,638)
sequence
aaggccagcctgggctagctatggagttcaagaacagctggattatagtg
tgagacaaacaaataaatgaaaaaacaaacaaaaaaccaaaaccaacaaa
aagcacctccaacagcactacctataaagttgccactgatttatactcac
atgtaagaaacctcaacatagatccagtgaacaactgtaaagcagtttaa
tatcattactttcatacattcatgcattcacacacacacacacacaaaat
gaccctaaaatgtacactaagcattaaaggtattcagttatctctggcta
ttaaaaatatgagcaacttcgttgggtatagtagctcatgcctcagagct
atgtagtatcaacaaaaaccaaacaaatgaatatgagtaactttttttct
ttttctttttttttttttttagatttatttattattatatgtaagtacac
tgtagctgtcttctgacacaccagaagagggagtcagatcttgttacgga
tggttgtgagccaccatgtggttgctgggatttgaactctggacctt
gaattcctgtacacagaaggcttcagtagtttagaaaggttgcagtcagc
aggagttcagtgcttaccctccacccaccccaccccagatggtcttgctg
acttcactggggtgcaaaacctggaggaggtgtgagtcttcctgtatgag
agtgagtgtagtacacctgtgggctggaacattctgtaaatcggcctaaa
cacagattgtacctacaggagaccccggcaccaccagtgtgcttggccct
ccagtgtactcagaggagcctgtgggtgggaaatgaggcagaggcagagc
taggggcaggagcaggaaacagtagtggactggtgcagtcctacagcagc
ctctgctgtccagtcaggggtgacagtgctgggccaggtgtggtcgagct
tcattcaatgtgtccttcctagtatgggaagcatgccttcctggtggctc
tgcaagtggtcctctggcctgtgtacaccctcactaacacagaaaatgta
attgaaaagtaaatgagactgctcaaaggagctgtgttcagccctgagtt
ggaggtgtttcaggcccagctgaagaaaggctccgaagttggaattccac
gggcttctttgccactgtggtttgtgggaagctggagcaggggctggaac
ctaagtcagtgctgacagggagagcaaggcctcctcattggagcaagctt
gccctccatttcctgaagggcaggagaggtgggaagaggccagccatggc
agccctgaactctcctgctggaaaacagtttactattccttccagacatt
cctctccacttcctcctcagctccttccttttctgggctggagagggcct
gcttctctcaaagctttgagtgcccatgaggccatggggccatgatgctg
aaagacctgaggtgggactatacccctccttcttacagagtgacgtagac
ccagtccccacatccaatgacctgtttggtggtggtcatccctttgtagt
caaccgttttgaacacctgtggccgaaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_74799864_74800416
seq2: B6Ng01-076P11.b_46_598 (reverse)

seq1  AAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCC  50

seq1  GTAACAAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTG  100
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTAACAAGATCTGACTCCCTCTTCTGGTGTGTCAGAAGACAGCTACAGTG  100

seq1  TACTTACATATAATAATAAATAAATCTAAAAAAAAAAAAAAAGAAAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACATATAATAATAAATAAATCTAAAAAAAAAAAAAAAGAAAAAGA  150

seq1  AAAAAAGTTACTCATATTCATTTGTTTGGTTTTTGTTGATACTACATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTTACTCATATTCATTTGTTTGGTTTTTGTTGATACTACATAGC  200

seq1  TCTGAGGCATGAGCTACTATACCCAACGAAGTTGCTCATATTTTTAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGCATGAGCTACTATACCCAACGAAGTTGCTCATATTTTTAATAG  250

seq1  CCAGAGATAACTGAATACCTTTAATGCTTAGTGTACATTTTAGGGTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATAACTGAATACCTTTAATGCTTAGTGTACATTTTAGGGTCATT  300

seq1  TTGTGTGTGTGTGTGTGTGAATGCATGAATGTATGAAAGTAATGATATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGTGTGTGTGTGAATGCATGAATGTATGAAAGTAATGATATTA  350

seq1  AACTGCTTTACAGTTGTTCACTGGATCTATGTTGAGGTTTCTTACATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTTACAGTTGTTCACTGGATCTATGTTGAGGTTTCTTACATGTG  400

seq1  AGTATAAATCAGTGGCAACTTTATAGGTAGTGCTGTTGGAGGTGCTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAATCAGTGGCAACTTTATAGGTAGTGCTGTTGGAGGTGCTTTTT  450

seq1  GTTGGTTTTGGTTTTTTGTTTGTTTTTTCATTTATTTGTTTGTCTCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTTGGTTTTTTGTTTGTTTTTTCATTTATTTGTTTGTCTCACAC  500

seq1  TATAATCCAGCTGTTCTTGAACTCCATAGCTAGCCCAGGCTGGCCTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCCAGCTGTTCTTGAACTCCATAGCTAGCCCAGGCTGGCCTTGAA  550

seq1  TTC  553
      |||
seq2  TTC  553

seq1: chr11_74647606_74648638
seq2: B6Ng01-076P11.g_68_1097

seq1  GAATTCCTGTACACAGAAGGCTTCAGTAGTTTAGAAAGGTTGCAGTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTACACAGAAGGCTTCAGTAGTTTAGAAAGGTTGCAGTCAGC  50

seq1  AGGAGTTCAGTGCTTACCCTCCACCCACCCCACCCCAGATGGTCTTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTCAGTGCTTACCCTCCACCCACCCCACCCCAGATGGTCTTGCTG  100

seq1  ACTTCACTGGGGTGCAAAACCTGGAGGAGGTGTGAGTCTTCCTGTATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACTGGGGTGCAAAACCTGGAGGAGGTGTGAGTCTTCCTGTATGAG  150

seq1  AGTGAGTGTAGTACACCTGTGGGCTGGAACATTCTGTAAATCGGCCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTGTAGTACACCTGTGGGCTGGAACATTCTGTAAATCGGCCTAAA  200

seq1  CACAGATTGTACCTACAGGAGACCCCGGCACCACCAGTGTGCTTGGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTGTACCTACAGGAGACCCCGGCACCACCAGTGTGCTTGGCCCT  250

seq1  CCAGTGTACTCAGAGGAGCCTGTGGGTGGGAAATGAGGCAGAGGCAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTACTCAGAGGAGCCTGTGGGTGGGAAATGAGGCAGAGGCAGAGC  300

seq1  TAGGGGCAGGAGCAGGAAACAGTAGTGGACTGGTGCAGTCCTACAGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGCAGGAGCAGGAAACAGTAGTGGACTGGTGCAGTCCTACAGCAGC  350

seq1  CTCTGCTGTCCAGTCAGGGGTGACAGTGCTGGGCCAGGTGTGGTCGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGTCCAGTCAGGGGTGACAGTGCTGGGCCAGGTGTGGTCGAGCT  400

seq1  TCATTCAATGTGTCCTTCCTAGTATGGGAAGCATGCCTTCCTGGTGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAATGTGTCCTTCCTAGTATGGGAAGCATGCCTTCCTGGTGGCTC  450

seq1  TGCAAGTGGTCCTCTGGCCTGTGTACACCCTCACTAACACAGAAAATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTGGTCCTCTGGCCTGTGTACACCCTCACTAACACAGAAAATGTA  500

seq1  ATTGAAAAGTAAATGAGACTGCTCAAAGGAGCTGTGTTCAGCCCTGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAAGTAAATGAGACTGCTCAAAGGAGCTGTGTTCAGCCCTGAGTT  550

seq1  GGAGGTGTTTCAGGCCCAGCTGAAGAAAGGCTCCGAAGTTGGAATTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGTTTCAGGCCCAGCTGAAGAAAGGCTCCGAAGTTGGAATTCCAC  600

seq1  GGGCTTCTTTGCCACTGTGGTTTGTGGGAAGCTGGAGCAGGGGCTGGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCTTTGCCACTGTGGTTTGTGGGAAGCTGGAGCAGGGGCTGGAAC  650

seq1  CTAAGTCAGTGCTGACAGGGAGAGCAAGGCCTCCTCATTGGAGCAAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCAGTGCTGACAGGGAGAGCAAGGCCTCCTCATTGGAGCAAGCTT  700

seq1  GCCCTCCACTTCCTGAAGGGCAGGAGAGGTGGGAAGAGGCCAGCCATGGC  750
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCATTTCCTGAAGGGCAGGAGAGGTGGGAAGAGGCCAGCCATGGC  750

seq1  AGCCCTGAACTCTCCCTGCTGGAAAACAGTTTACTATTCCTTCCAGACAT  800
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  AGCCCTGAACTCT-CCTGCTGGAAAACAGTTTACTATTCCTTCCAGACA-  798

seq1  TTCCTCTCCACTTCCTCCTCAGCTCCTTCCTTGTCTTGGGCTGGAGATGG  850
      |||||||||||||||||||||||||||||||| || ||||||||||| ||
seq2  TTCCTCTCCACTTCCTCCTCAGCTCCTTCCTTTTC-TGGGCTGGAGA-GG  846

seq1  GCCTGCTTCTCTCAAAGCTTTGAGTGCCCATGAGGCCATGGGGCCATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCCTGCTTCTCTCAAAGCTTTGAGTGCCCATGAGGCCATGGGGCCATGAT  896

seq1  GCTGAGAAGACCTGAGGTGGGACTATACCCCTCCTTCTTACAGAG-GACG  949
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTGA-AAGACCTGAGGTGGGACTATACCCCTCCTTCTTACAGAGTGACG  945

seq1  TAGACCCAGT-CCCACATCACATGACCTGTTTGG-GGTGTGTCATCCCTT  997
      |||||||||| ||||||||  ||||||||||||| |||| ||||||||||
seq2  TAGACCCAGTCCCCACATCCAATGACCTGTTTGGTGGTG-GTCATCCCTT  994

seq1  TGTTGTCAACAGTTTTGAACACCGTGGGCAGAAAAG  1033
      ||| |||||| ||||||||||||   ||| ||||||
seq2  TGTAGTCAACCGTTTTGAACACCTGTGGCCGAAAAG  1030