BAC Information

Click to search

BAC

Clone NameB6Ng01-077E03
Chromosome11 (Build37)17 (Build37)
Map Location 20,842,137 - 20,842,38018,030,210 - 18,031,344
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSpred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035
Downstream genePeli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077E03.bB6Ng01-077E03.g
ACCDH893283DH893284
length3491,123
definitionDH893283|Mus musculus domesticus DNA, BAC clone: B6Ng01-077E03, 5' end.DH893284|Mus musculus domesticus DNA, BAC clone: B6Ng01-077E03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,842,137 - 20,842,380)(18,030,210 - 18,031,344)
sequence
ttaactgtggaattttgaatggctgagaagcacctaatgttcaacataat
tagtcatcagggaaatgcaaattaaaacaaccctgacattctaccttaac
atggggcccccaatggagaagctagaataagcacccaaggagctgaaagg
agtccacaaccctataggtggaacaacagcatgaaccaaccagtaccccc
agagctcatatctatagctgcatatgtagcagaagatggcctaatcggcc
atcacagggaggagaggccccttggtattgcaaactttatatgccccagt
acaggggaatgccagggccaagaagagggggtgggtgggtaggggagca
gaattcctggaggagatgtgtattgtacattcaactttggatcctgggct
caaactgatgaagaaaagttgaacacagctatcacttttgtaacaactag
agggatcatcaggttccttattggtttcagcatgcccatgtcaattgttg
ctgtttgctatggactcattgctgtcaagatcaacagaagaaaccttgtt
aattccagccgtcctttacgagtccttacagcagttgtggcttccttctt
tatctgctggtttccctttcagcttgtggcccttttgggcacagtctggt
ttaaagagacattgcttagtggtagttataaaattcttgacatgtttgtt
aacccaacaagctcattggcttacttcaatagttgtctcaatccgatgct
ctatgttttcatgggccaggactttcgtgagagatttattcattccctgc
cttatagtcttgagagagccctgagtgaggattctggtcaaaccagtgat
tcaagcaccagttctacttcacctcctgcagacattgagttaaaggcccc
atgaagtctgtgataagggatggttttcattccacttcagtcccattcca
cttctgccttccttaccttatgctgtgtcctatagcatttttaatctgaa
aaaaaaaaaaaaacttctgtgtcccctgaatctggaaaatgaaataaaag
tcaatgttaatattgttgttcttttgtgttcttttaaaaactaagccttt
atactctaaacaaaactaatgtagtggagcaatgtactacaagagaggaa
aagagcaatgcatattctcaaggcttatacatgatggtaaatattaaaaa
taagttattctatttcataggctgagaagatgtctcaatggttaatacaa
atttctgctttagtagaatacctgagtttagttcaaccacccacagcacc
tgaattacaattggtagtattctatctgtagaaattcatggctccagact
aagagcatttttactcatatgccatttgctttcttcccccaatactaata
taaataaaatttaaatattatttatcatatgagtaaattaaatgttattt
aattattattataaattaaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_20842137_20842380
seq2: B6Ng01-077E03.b_160_401 (reverse)

seq1  TGCTCCCCTACCCACCCACTCCTGCTTCTTGGCCCTGGCATTCTCCTGTA  50
      ||||||||||||||||||| ||  ||||||||||||||||||| ||||||
seq2  TGCTCCCCTACCCACCCACCCCCTCTTCTTGGCCCTGGCATTCCCCTGTA  50

seq1  CTGGGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCAGTGATG  100
      |||||||||||||||||||||| ||||||||||||||| |||| ||||||
seq2  CTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCCTCCCTGTGATG  100

seq1  GCCGACTAGGACATCTTCTAATACATATGATGCAACTAGAGACACGAGCT  150
      ||||| |||| ||||||||  |||||   ||||| ||| ||| | |||||
seq2  GCCGATTAGGCCATCTTCTGCTACAT---ATGCAGCTATAGATATGAGCT  147

seq1  CTGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGAGTTGCAGA  200
      ||||||||||||||| ||||||  ||||||||||||||||| ||||  ||
seq2  CTGGGGGTACTGGTTGGTTCATGCTGTTGTTCCACCTATAGGGTTGTGGA  197

seq1  C-CCCTTCAGCTCCTTGGGTGCTTTCTCTAGCTTCTCCATTGGGG  244
      | || |||||||||||||||||||  |||||||||||||||||||
seq2  CTCCTTTCAGCTCCTTGGGTGCTTATTCTAGCTTCTCCATTGGGG  242

seq1: chr17_18030210_18031344
seq2: B6Ng01-077E03.g_68_1190

seq1  GAATTCCTGGAGGAGATGTGTATTGTACATTCAACTTTGGATCCTGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAGGAGATGTGTATTGTACATTCAACTTTGGATCCTGGGCT  50

seq1  CAAACTGATGAAGAAAAGTTGAACACAGCTATCACTTTTGTAACAACTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGATGAAGAAAAGTTGAACACAGCTATCACTTTTGTAACAACTAG  100

seq1  AGGGATCATCAGGTTCCTTATTGGTTTCAGCATGCCCATGTCAATTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCATCAGGTTCCTTATTGGTTTCAGCATGCCCATGTCAATTGTTG  150

seq1  CTGTTTGCTATGGACTCATTGCTGTCAAGATCAACAGAAGAAACCTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGCTATGGACTCATTGCTGTCAAGATCAACAGAAGAAACCTTGTT  200

seq1  AATTCCAGCCGTCCTTTACGAGTCCTTACAGCAGTTGTGGCTTCCTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGCCGTCCTTTACGAGTCCTTACAGCAGTTGTGGCTTCCTTCTT  250

seq1  TATCTGCTGGTTTCCCTTTCAGCTTGTGGCCCTTTTGGGCACAGTCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCTGGTTTCCCTTTCAGCTTGTGGCCCTTTTGGGCACAGTCTGGT  300

seq1  TTAAAGAGACATTGCTTAGTGGTAGTTATAAAATTCTTGACATGTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGACATTGCTTAGTGGTAGTTATAAAATTCTTGACATGTTTGTT  350

seq1  AACCCAACAAGCTCATTGGCTTACTTCAATAGTTGTCTCAATCCGATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAACAAGCTCATTGGCTTACTTCAATAGTTGTCTCAATCCGATGCT  400

seq1  CTATGTTTTCATGGGCCAGGACTTTCGTGAGAGATTTATTCATTCCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTTTCATGGGCCAGGACTTTCGTGAGAGATTTATTCATTCCCTGC  450

seq1  CTTATAGTCTTGAGAGAGCCCTGAGTGAGGATTCTGGTCAAACCAGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGTCTTGAGAGAGCCCTGAGTGAGGATTCTGGTCAAACCAGTGAT  500

seq1  TCAAGCACCAGTTCTACTTCACCTCCTGCAGACATTGAGTTAAAGGCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCACCAGTTCTACTTCACCTCCTGCAGACATTGAGTTAAAGGCCCC  550

seq1  ATGAAGTCTGTGATAAGGGATGGTTTTCATTCCACTTCAGTCCCATTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCTGTGATAAGGGATGGTTTTCATTCCACTTCAGTCCCATTCCA  600

seq1  CTTCTGCCTTCCTTACCTTATGCTGTGTCCTATAGCATTTTTAATCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCTTCCTTACCTTATGCTGTGTCCTATAGCATTTTTAATCTGAA  650

seq1  AAAAAAAAAAAAACTTCTGTGTCCCCTGAATCTGGAAAATGAAATAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAACTTCTGTGTCCCCTGAATCTGGAAAATGAAATAAAAG  700

seq1  TCAATGTTAATATTGTTGTTCTTTTGTGTTCTTTTAAAAACTAAGCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTTAATATTGTTGTTCTTTTGTGTTCTTTTAAAAACTAAGCCTTT  750

seq1  ATACTCTAAACAAAACTAATGTAGTGGAGCAATGTACTACAAGAGAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTAAACAAAACTAATGTAGTGGAGCAATGTACTACAAGAGAGGAA  800

seq1  AAGAGCAATGCATATTCTCAAGGCTTATACATGATGGTAAATATTAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAATGCATATTCTCAAGGCTTATACATGATGGTAAATATTAAAAA  850

seq1  TAAGTTATTCTATTTCATAGGCTGAGAAGATGTCTCAATGGTTAATACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTATTCTATTTCATAGGCTGAGAAGATGTCTCAATGGTTAATACAA  900

seq1  ATTTCTGCTTTAGTAGAATACCTGAGTTTAGTTTCAACCACCCACAGCAC  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTTCTGCTTTAGTAGAATACCTGAGTTTAG-TTCAACCACCCACAGCAC  949

seq1  CTGAATTACAATTGGTAGTAATTCTATCTGTAGAAAATTCAAGGGCTCCA  1000
      ||||||||||||||||||| ||||||||||||| |||||| | |||||||
seq2  CTGAATTACAATTGGTAGT-ATTCTATCTGTAG-AAATTC-ATGGCTCCA  996

seq1  GACTTAGTAAGCATTTATACTCATACG-CATTTGCTGTCTTCACACAAAT  1049
      |||| ||  ||||||| |||||||| | |||||||| ||||| | |||  
seq2  GACTAAG--AGCATTTTTACTCATATGCCATTTGCTTTCTTCCCCCAA--  1042

seq1  AACTAAATATAAAATAAAATATTAAATATTATTTATCATTAATGAGTAAT  1099
       ||| ||||| ||||||||| ||||||||||||||||||  |||||||| 
seq2  TACT-AATAT-AAATAAAAT-TTAAATATTATTTATCAT--ATGAGTAA-  1086

seq1  ATTAAATGTTATTTAA-TATTATTAATATATAAATAT  1135
      |||||||||||||||| ||||||||  |  |||||||
seq2  ATTAAATGTTATTTAATTATTATTATAAATTAAATAT  1123