BAC Information

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BAC

Clone NameB6Ng01-077F07
Chromosome11 (Build37)
Map Location 59,269,134 - 59,365,813
singlet/doubletdoublet
Overlap geneJmjd4, BC050078, LOC432565, Zkscan17, Nlrp3
Upstream geneOlfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik
Downstream geneOlfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077F07.bB6Ng01-077F07.g
ACCDH893336DH893337
length1,146843
definitionDH893336|Mus musculus domesticus DNA, BAC clone: B6Ng01-077F07, 5' end.DH893337|Mus musculus domesticus DNA, BAC clone: B6Ng01-077F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,364,658 - 59,365,813)(59,269,134 - 59,269,979)
sequence
gaattcagtgttagccctagtgccgttggactggtatcagtacaaggaaa
ggttgttagaggttggaggacagacacacagctagaagatgatgcaaaga
ttcaaggagaaaatggccacctacaagccagggagagagacacagaacaa
atcaaccaatggatatgtgattttgaactcctaacagccaaacctgagtg
gccacagtccacccaatactgtgcatggaagcgatattctcccaaacgct
tacttcttagttcattgggttttgttctcaatcccattcattaatcatct
ttctctactgtcttctcccaatcattctacacacacacacacacacacac
acacacacacacagacttaccacagtctctgaatgttacagcctgggtgc
tggagtgcctcacacagcaccctcatgcccgggtctcccagagtattgtc
actgaggtccagttcagtgaggctccggttggtgcttagacttgagaaga
gaccacggcagaagctagaagtgaggcagcagttcaccagtctagaatgg
caaaggaggaggccagaagaaaggattagtttccaggaacaacaaactgg
agctcaggacagggatcctggcacctgttcatagccgtctcctaagtgtt
aagccaccagtcacagacctactgtccaggcccctccttcccagtcacac
cgttgtttccctggcctgtttgcagcttaagtggccaaggagcatctttg
actcagctgcccagatgcagcaggagtgctgtcaaaatgcccaaggccag
gctgcaaccacagaagtgaagtctgagtcttaaaagagtgacacagggct
ggtgagatggctcagtgggttagagcacccgactgctcttccgaaggtcc
agagttcaatcccagcaactacatggtggctcacacccatccgtaacgag
atctgactccttcttctggagtgtctgaagacagctacaatgtacttaca
tatataaataaataatcactctcttaaaaaaaaagagtgacacagctaca
ctggcagtttttaatcttatagtcattttgagggagtcacataagaagcc
ctgtagcacttataatgcagagaagctgcggatgggacgttgctta
gaattctggagagcatcttcttcagaaggcccagggcccttctggaaatt
caggctaccttcccaaggaataggatgtgctccaagcctgtgccagtaca
gtacttgcagagggtgaaccttgaggaaggtccagccaaaatgggaattt
aactcttggaggctagagagatgttcacccatctagcctctagcaagcct
gccaagaatgtgaattgagtagtagtcatgaaaccaggtttctttggagc
ctctcagcctcttgtagttatcctaggactcctgagtgatggacatccga
cttgcctacctcggaggtatccctgtgtaacctggaacatagatgtatat
gtatgtgtgcatgtatgtatgtatgtatgcagttgccctccaagactctc
atcctctagttctgtcctaggagctccagactccaactgaactaggagga
attaatcagtgtatgaaaagctgaagggggagttccttttttataaggta
tttatttattatatgtgagtaccctgtagctgttttcagacactccagaa
cagggcgtcagatctcattacagatggatgtgagccaccgtgtggttgct
gggatttttgaactcaggacctctgaagagcagtcagtgctcttaactgc
tgaaccatctctccagcctgaagggggagttcttagctgggtgtcagtgg
ctagagggacagtataaatggcttaaaaactcatgttctggtcctcccag
tccccaggatagatatgactgtacagaactagggagcagtcgcattcttc
tccatggcagtccttcagtcctggccttctatgctagatcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_59364658_59365813
seq2: B6Ng01-077F07.b_48_1193 (reverse)

seq1  TAAGCTACGTCCCATCCGCAGGCTCTCTGCATTTTAATAAGTGCTACAGG  50
      ||||| |||||||||||||||  ||||||||||   ||||||||||||||
seq2  TAAGCAACGTCCCATCCGCAGCTTCTCTGCATT---ATAAGTGCTACAGG  47

seq1  GTTTTCTAATGTGACTCCCTCAAAATGACTATAAGAATTAAAAACTGCCA  100
      |  |||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  G-CTTCTTATGTGACTCCCTCAAAATGACTATAAG-ATTAAAAACTGCCA  95

seq1  GTGTAGCTGTGTCACTCTTTTTTTTTTAAGAGAGTGATTTATTTATTTAT  150
      ||||||||||||||||| ||||||||||||||||||| ||||||||||| 
seq2  GTGTAGCTGTGTCACTC-TTTTTTTTTAAGAGAGTGA-TTATTTATTTA-  142

seq1  TATATGTAAGTACATTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATATGTAAGTACATTGTAGCTGTCTTCAGACACTCCAGAAGAAGGAGTC  192

seq1  AGATCTCGTTACGGATGGTTGTGAGCCACCATGTAGTTGCTGGGATTTGA  250
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  AGATCTCGTTACGGATGGGTGTGAGCCACCATGTAGTTGCTGGGA-TTGA  241

seq1  ACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTAACCCACTGAGCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTAACCCACTGAGCCATC  291

seq1  TCACCAGCCCTGTGTCACTCTTTTAAGACTCAGACTTCACTTCTGTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGCCCTGTGTCACTCTTTTAAGACTCAGACTTCACTTCTGTGGTT  341

seq1  GCAGCCTGGCCTTGGGCATTTTGACAGCACTCCTGCTGCATCTGGGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCAGCCTGGCCTTGGGCATTTTGACAGCACTCCTGCTGCATCTGGGCAG-  390

seq1  CTGAGTCAAAGATGCTCCTTGGCCACTTAAGCTGCAAACAGGCCAGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCAAAGATGCTCCTTGGCCACTTAAGCTGCAAACAGGCCAGGGAA  440

seq1  ACAACGGTGTGACTGGGAAGGAGGGGCCTGGACAGTAGGTCTGTGACTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGGTGTGACTGGGAAGGAGGGGCCTGGACAGTAGGTCTGTGACTGG  490

seq1  TGGCTTAACACTTAGGAGACGGCTATGAACAGGTGCCAGGATCCCTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAACACTTAGGAGACGGCTATGAACAGGTGCCAGGATCCCTGTCC  540

seq1  TGAGCTCCAGTTTGTTGTTCCTGGAAACTAATCCTTTCTTCTGGCCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCAGTTTGTTGTTCCTGGAAACTAATCCTTTCTTCTGGCCTCCT  590

seq1  CCTTTGCCATTCTAGACTGGTGAACTGCTGCCTCACTTCTAGCTTCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCATTCTAGACTGGTGAACTGCTGCCTCACTTCTAGCTTCTGCC  640

seq1  GTGGTCTCTTCTCAAGTCTAAGCACCAACCGGAGCCTCACTGAACTGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTCTTCTCAAGTCTAAGCACCAACCGGAGCCTCACTGAACTGGAC  690

seq1  CTCAGTGACAATACTCTGGGAGACCCGGGCATGAGGGTGCTGTGTGAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGACAATACTCTGGGAGACCCGGGCATGAGGGTGCTGTGTGAGGC  740

seq1  ACTCCAGCACCCAGGCTGTAACATTCAGAGACTGTGGTAAGTCTGTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCACCCAGGCTGTAACATTCAGAGACTGTGGTAAGTCTGTGTGT  790

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAATGATTGGGAGAAGACAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAATGATTGGGAGAAGACAGT  840

seq1  AGAGAAAGATGATTAATGAATGGGATTGAGAACAAAACCCAATGAACTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGATGATTAATGAATGGGATTGAGAACAAAACCCAATGAACTAA  890

seq1  GAAGTAAGCGTTTGGGAGAATATCGCTTCCATGCACAGTATTGGGTGGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAGCGTTTGGGAGAATATCGCTTCCATGCACAGTATTGGGTGGAC  940

seq1  TGTGGCCACTCAGGTTTGGCTGTTAGGAGTTCAAAATCACATATCCATTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCACTCAGGTTTGGCTGTTAGGAGTTCAAAATCACATATCCATTG  990

seq1  GTTGATTTGTTCTGTGTCTCTCTCCCTGGCTTGTAGGTGGCCATTTTCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTTGTTCTGTGTCTCTCTCCCTGGCTTGTAGGTGGCCATTTTCTC  1040

seq1  CTTGAATCTTTGCATCATCTTCTAGCTGTGTGTCTGTCCTCCAACCTCTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATCTTTGCATCATCTTCTAGCTGTGTGTCTGTCCTCCAACCTCTA  1090

seq1  ACAACCTTTCCTTGTACTGATACCAGTCCAACGGCACTAGGGCTAACACT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTTTCCTTGTACTGATACCAGTCCAACGGCACTAGGGCTAACACT  1140

seq1  GAATTC  1156
      ||||||
seq2  GAATTC  1146

seq1: chr11_59269134_59269979
seq2: B6Ng01-077F07.g_69_911

seq1  GAATTCTGGAGAGCATCTTCTTCAGAAGGCCCAGGGCCCTTCTGGAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAGAGCATCTTCTTCAGAAGGCCCAGGGCCCTTCTGGAAATT  50

seq1  CAGGCTACCTTCCCAAGGAATAGGATGTGCTCCAAGCCTGTGCCAGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTACCTTCCCAAGGAATAGGATGTGCTCCAAGCCTGTGCCAGTACA  100

seq1  GTACTTGCAGAGGGTGAACCTTGAGGAAGGTCCAGCCAAAATGGGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGCAGAGGGTGAACCTTGAGGAAGGTCCAGCCAAAATGGGAATTT  150

seq1  AACTCTTGGAGGCTAGAGAGATGTTCACCCATCTAGCCTCTAGCAAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTGGAGGCTAGAGAGATGTTCACCCATCTAGCCTCTAGCAAGCCT  200

seq1  GCCAAGAATGTGAATTGAGTAGTAGTCATGAAACCAGGTTTCTTTGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAATGTGAATTGAGTAGTAGTCATGAAACCAGGTTTCTTTGGAGC  250

seq1  CTCTCAGCCTCTTGTAGTTATCCTAGGACTCCTGAGTGATGGACATCCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGCCTCTTGTAGTTATCCTAGGACTCCTGAGTGATGGACATCCGA  300

seq1  CTTGCCTACCTCGGAGGTATCCCTGTGTAACCTGGAACATAGATGTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTACCTCGGAGGTATCCCTGTGTAACCTGGAACATAGATGTATAT  350

seq1  GTATGTGTGCATGTATGTATGTATGTATGCAGTTGCCCTCCAAGACTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGCATGTATGTATGTATGTATGCAGTTGCCCTCCAAGACTCTC  400

seq1  ATCCTCTAGTTCTGTCCTAGGAGCTCCAGACTCCAACTGAACTAGGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTAGTTCTGTCCTAGGAGCTCCAGACTCCAACTGAACTAGGAGGA  450

seq1  ATTAATCAGTGTATGAAAAGCTGAAGGGGGAGTTCCTTTTTTATAAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCAGTGTATGAAAAGCTGAAGGGGGAGTTCCTTTTTTATAAGGTA  500

seq1  TTTATTTATTATATGTGAGTACCCTGTAGCTGTTTTCAGACACTCCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTATATGTGAGTACCCTGTAGCTGTTTTCAGACACTCCAGAA  550

seq1  CAGGGCGTCAGATCTCATTACAGATGGATGTGAGCCACCGTGTGGTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCGTCAGATCTCATTACAGATGGATGTGAGCCACCGTGTGGTTGCT  600

seq1  GGGA-TTTTGAACTCAGGACCTCTGAAGAGCAGTCAGTGCTCTTAACTGC  649
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTTGAACTCAGGACCTCTGAAGAGCAGTCAGTGCTCTTAACTGC  650

seq1  TGAACCATCTCTCCAGCCTGAAGGGGGAGTTCTTAAGCTGGGTGTCAGTG  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGAACCATCTCTCCAGCCTGAAGGGGGAGTTCTT-AGCTGGGTGTCAGTG  699

seq1  GCTAGAGGCACAGTACTAAATGGCTGAAAAACCCAGGTTCTGGTCCATCC  749
      |||||||| |||||| ||||||||| |||||| || |||||||||| |||
seq2  GCTAGAGGGACAGTA-TAAATGGCTTAAAAACTCATGTTCTGGTCC-TCC  747

seq1  AAGTCCCCAGGATAGAGATGATTGTACAGAACTAGGGAGCAGTCGCATTC  799
       ||||||||||||||| |||| ||||||||||||||||||||||||||||
seq2  CAGTCCCCAGGATAGATATGACTGTACAGAACTAGGGAGCAGTCGCATTC  797

seq1  TTCTCCATGGCAGTCCTTCAAGGCCTGGCCTCCTATGCTAGCTCATC  846
      ||||||||||||||||||| || |||||||| ||||||||| |||||
seq2  TTCTCCATGGCAGTCCTTC-AGTCCTGGCCTTCTATGCTAGATCATC  843