BAC Information

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BAC

Clone NameB6Ng01-077O04
Chromosome11 (Build37)
Map Location 59,624,046 - 59,759,388
singlet/doubletdoublet
Overlap geneCops3, Nt5m
Upstream geneOlfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn
Downstream geneMed9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077O04.bB6Ng01-077O04.g
ACCDH893743DH893744
length6311,017
definitionDH893743|Mus musculus domesticus DNA, BAC clone: B6Ng01-077O04, 5' end.DH893744|Mus musculus domesticus DNA, BAC clone: B6Ng01-077O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,758,758 - 59,759,388)(59,624,046 - 59,625,066)
sequence
gaattcctatgaagagaacaggtttgctataaaagcaaggtctccctcct
cttgctctcaagttatacagcatctgctgtcatattacgacagaaacata
agccccttgccaaacatggccccttgatcatgaccttctcagatcagcaa
ctgtgtatgtaaataatctctgttcattatcaatcatccagtctgtgatc
tccttatagaatacaaacatactaagaagcctataaaatacctgggacca
tgatatgtgtgagataatataaaagatatttttacttggatgtggaaaac
ccaggctgacagcagattgaaatgtgctctgggttccgcagttaagaaca
ctggctgcttttccagatgatgttggtttgagtccagcacccatgtaggc
agctcacaactgtgcgtaactctagtctgagagatatgatgccctcttct
ggcatccatggtcaccaggcatacaaatgatgcagagacacaaagcaggc
aaaacgcccacacaccatacataaaataaatctcaagtaaaatataaaaa
gaaaacggccaaagctcctaaaacatcatcttaattattattcacctagg
atttcatcttaaaaaggaaaaatggagctgg
gaattccaggccagcctggtctaaagaatgagttccaggacagccagggc
tacacagagaaaccctgtaaaaccaaaaagaaagaaagaaaagaaaaaaa
aaggattttaagggctggagagatggttcagcggttaagagcattaactg
ctcttccagaggtcctgagttcaattccaaacaaccacatggtggctcac
aaccatctataatgggatccaatgctctcttctggtgtgcatgaagagag
tgacagtgtactcacattttaaaaataataaaaaaaaatacatctttttt
taaatgaattttaaagctattagtgcataccatgggcccttgaagacaga
tgagaacagagctctgggcttgagcctgtaactaacgctgccagctgtac
acagcggccagcgctgccagcctccgctgtgtacacgaggacgcccagaa
tgtggttatccggaagtgggaagcttcagatgagtagaagttgatgagtt
ggtatctgtttgtttttcaaatcacggggatcggattcctttctctctat
ttcagctttcgtgttttgttggaagagggagcaggaggaaaaaaaatatg
caaacttgtgttctataactttgtttactgcctggtaaagattaaggagt
gcagggtggagttatggtgttaggtattgtcttgtgtgtgtttattttta
ccaatccgattatttcctgatactgtgagtcatctcctgtcctccacgag
gctcttccctaccctttctccaagactagagcaagcagacagcagaagaa
gaaagcagatacctgacactaggggttaacaaacttaagcaggataaaac
agctttaagcaactgcactcaggatataagtgaaaccagtgcactccccc
acagcgatggttaggaagaaccaggtcagctctgactattgctctgagaa
ccaggatcctgtaatgcgaccggaggattgggcagccaaccaaagcaatc
acttcagagagagctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_59758758_59759388
seq2: B6Ng01-077O04.b_48_678 (reverse)

seq1  CCAGCTCCATTTTTCCTTTTTAAGATGAAATCCTAGGTGAATAATAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCATTTTTCCTTTTTAAGATGAAATCCTAGGTGAATAATAATTA  50

seq1  AGATGATGTTTTAGGAGCTTTGGCCGTTTTCTTTTTATATTTTACTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATGTTTTAGGAGCTTTGGCCGTTTTCTTTTTATATTTTACTTGAG  100

seq1  ATTTATTTTATGTATGGTGTGTGGGCGTTTTGCCTGCTTTGTGTCTCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTATGTATGGTGTGTGGGCGTTTTGCCTGCTTTGTGTCTCTGC  150

seq1  ATCATTTGTATGCCTGGTGACCATGGATGCCAGAAGAGGGCATCATATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGTATGCCTGGTGACCATGGATGCCAGAAGAGGGCATCATATCT  200

seq1  CTCAGACTAGAGTTACGCACAGTTGTGAGCTGCCTACATGGGTGCTGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACTAGAGTTACGCACAGTTGTGAGCTGCCTACATGGGTGCTGGAC  250

seq1  TCAAACCAACATCATCTGGAAAAGCAGCCAGTGTTCTTAACTGCGGAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCAACATCATCTGGAAAAGCAGCCAGTGTTCTTAACTGCGGAACC  300

seq1  CAGAGCACATTTCAATCTGCTGTCAGCCTGGGTTTTCCACATCCAAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCACATTTCAATCTGCTGTCAGCCTGGGTTTTCCACATCCAAGTAA  350

seq1  AAATATCTTTTATATTATCTCACACATATCATGGTCCCAGGTATTTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTTTTATATTATCTCACACATATCATGGTCCCAGGTATTTTATA  400

seq1  GGCTTCTTAGTATGTTTGTATTCTATAAGGAGATCACAGACTGGATGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTAGTATGTTTGTATTCTATAAGGAGATCACAGACTGGATGATT  450

seq1  GATAATGAACAGAGATTATTTACATACACAGTTGCTGATCTGAGAAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGAACAGAGATTATTTACATACACAGTTGCTGATCTGAGAAGGTC  500

seq1  ATGATCAAGGGGCCATGTTTGGCAAGGGGCTTATGTTTCTGTCGTAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAAGGGGCCATGTTTGGCAAGGGGCTTATGTTTCTGTCGTAATAT  550

seq1  GACAGCAGATGCTGTATAACTTGAGAGCAAGAGGAGGGAGACCTTGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGATGCTGTATAACTTGAGAGCAAGAGGAGGGAGACCTTGCTTT  600

seq1  TATAGCAAACCTGTTCTCTTCATAGGAATTC  631
      |||||||||||||||||||||||||||||||
seq2  TATAGCAAACCTGTTCTCTTCATAGGAATTC  631

seq1: chr11_59624046_59625066
seq2: B6Ng01-077O04.g_69_1085

seq1  GAATTCCAGGCCAGCCTGGTCTAAAGAATGAGTTCCAGGACAGCCAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCTGGTCTAAAGAATGAGTTCCAGGACAGCCAGGGC  50

seq1  TACACAGAGAAACCCTGTAAAACCAAAAAGAAAGAAAGAAAAGAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCTGTAAAACCAAAAAGAAAGAAAGAAAAGAAAAAAA  100

seq1  AAGGATTTTAAGGGCTGGAGAGATGGTTCAGCGGTTAAGAGCATTAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTTAAGGGCTGGAGAGATGGTTCAGCGGTTAAGAGCATTAACTG  150

seq1  CTCTTCCAGAGGTCCTGAGTTCAATTCCAAACAACCACATGGTGGCTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGAGGTCCTGAGTTCAATTCCAAACAACCACATGGTGGCTCAC  200

seq1  AACCATCTATAATGGGATCCAATGCTCTCTTCTGGTGTGCATGAAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTATAATGGGATCCAATGCTCTCTTCTGGTGTGCATGAAGAGAG  250

seq1  TGACAGTGTACTCACATTTTAAAAATAATAAAAAAAAATACATCTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGTACTCACATTTTAAAAATAATAAAAAAAAATACATCTTTTTT  300

seq1  TAAATGAATTTTAAAGCTATTAGTGCATACCATGGGCCCTTGAAGACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAATTTTAAAGCTATTAGTGCATACCATGGGCCCTTGAAGACAGA  350

seq1  TGAGAACAGAGCTCTGGGCTTGAGCCTGTAACTAACGCTGCCAGCTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACAGAGCTCTGGGCTTGAGCCTGTAACTAACGCTGCCAGCTGTAC  400

seq1  ACAGCGGCCAGCGCTGCCAGCCTCCGCTGTGTACACGAGGACGCCCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGGCCAGCGCTGCCAGCCTCCGCTGTGTACACGAGGACGCCCAGAA  450

seq1  TGTGGTTATCCGGAAGTGGGAAGCTTCAGATGAGTAGAAGTTGATGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTATCCGGAAGTGGGAAGCTTCAGATGAGTAGAAGTTGATGAGTT  500

seq1  GGTATCTGTTTGTTTTTCAAATCACGGGGATCGGATTCCTTTCTCTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTGTTTGTTTTTCAAATCACGGGGATCGGATTCCTTTCTCTCTAT  550

seq1  TTCAGCTTTCGTGTTTTGTTGGAAGAGGGAGCAGGAGGAAAAAAAATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTTCGTGTTTTGTTGGAAGAGGGAGCAGGAGGAAAAAAAATATG  600

seq1  CAAACTTGTGTTCTATAACTTTGTTTACTGCCTGGTAAAGATTAAGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGTGTTCTATAACTTTGTTTACTGCCTGGTAAAGATTAAGGAGT  650

seq1  GCAGGGTGGAGTTATGGTGTTAGGTATTGTCTTGTGTGTGTTTATTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTGGAGTTATGGTGTTAGGTATTGTCTTGTGTGTGTTTATTTTTA  700

seq1  CCAATCCGATTA-TTCCTGATACTGTGAGTCATCTCCTGTCCTCCACGAG  749
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCAATCCGATTATTTCCTGATACTGTGAGTCATCTCCTGTCCTCCACGAG  750

seq1  GCTCTTCCCTACCC-TTCTCCAAGACTAGAGCAAGCAGACAGCAGAAGAA  798
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCCTACCCTTTCTCCAAGACTAGAGCAAGCAGACAGCAGAAGAA  800

seq1  GAAAGCAGATACCTGACAACTAGGGGTTAACAAACTTAAGCAGGATAAAA  848
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAAAGCAGATACCTGAC-ACTAGGGGTTAACAAACTTAAGCAGGATAAAA  849

seq1  CAGCTTTAAGCAGACTGCCACTCAGGATATAAGTGAAACCAGTTGCAACT  898
      |||||||||||| |||| |||||||||||||||||||||||| ||||   
seq2  CAGCTTTAAGCA-ACTG-CACTCAGGATATAAGTGAAACCAG-TGCACTC  896

seq1  CCCCACAGCGAT-GTTAGGAAGAACCAGGTCAGCTCTGACTATGGCTCTG  947
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  CCCCACAGCGATGGTTAGGAAGAACCAGGTCAGCTCTGACTATTGCTCTG  946

seq1  AGAACCAGGATCCTGTATTGCGACCAGAGGATTTGGGCAGCCAACCAAAA  997
      ||||||||||||||||| ||||||| ||||| |||||||||||||| |||
seq2  AGAACCAGGATCCTGTAATGCGACCGGAGGA-TTGGGCAGCCAACC-AAA  994

seq1  GCAGTCACTACAGAGAGAGTCTGG  1021
      ||| ||||| ||||||||| ||||
seq2  GCAATCACTTCAGAGAGAG-CTGG  1017