BAC Information

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BAC

Clone NameB6Ng01-078G13
Chromosome5 (Build37)11 (Build37)
Map Location 131,241,280 - 131,242,14869,239,249 - 69,239,333
singlet/doubletsingletsinglet
Overlap geneCaln1
Upstream geneGbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik
Downstream geneWbscr17, Auts2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078G13.bB6Ng01-078G13.g
ACCDH894114DH894115
length41863
definitionDH894114|Mus musculus domesticus DNA, BAC clone: B6Ng01-078G13, 5' end.DH894115|Mus musculus domesticus DNA, BAC clone: B6Ng01-078G13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(131,241,280 - 131,242,148)(69,239,249 - 69,239,333)
sequence
gaattcatggggggggggggctggacacatggttcagtactaagacaacc
ttctgctcttgcaaaggacaattttttcaattccttccacctacaatggg
aggctctgtaactccagagtttctgttaactttaactcccactgaaactc
tggagtcataagggagtacttgtaactttgactccagggggatatgatgc
cctctactagattctataggcaactgcaacacacgtacacatacagacac
acacacacacacacacacacacacacacacacacacacacattaaaacaa
agcaaactttcaaataaattgaatttatggtagctgtctaagcttcatct
tctattgctgagattaaagtaatctaacaaatgcaacttaatctagaatg
atagattaaactagaatt
ccggacagccagggctacacagagaaaccctgtctcaaaaggaggaggag
gaggaggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_131241280_131242148
seq2: B6Ng01-078G13.b_44_938

seq1  GAATTCAT-GGGGGGGGGGGCTGGAGAGATGGTTCAGTACTAAGACAACC  49
      |||||||| |||||||||||||||| | ||||||||||||||||||||||
seq2  GAATTCATGGGGGGGGGGGGCTGGACACATGGTTCAGTACTAAGACAACC  50

seq1  TTCTGCTCTTGCAAAGGACAA-GAGTTCAATTCCTTCCACCTACAATGGG  98
      |||||||||||||||||||||    |||||||||||||||||||||||||
seq2  TTCTGCTCTTGCAAAGGACAATTTTTTCAATTCCTTCCACCTACAATGGG  100

seq1  AGGCTCTGTAACTCCAGAGTTTCTGTTAACTTTAACTCCCACTGAAACTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGTAACTCCAGAGTTTCTGTTAACTTTAACTCCCACTGAAACTC  150

seq1  TGGAGTCATAAGGGAGTACTTGTAACTTTGACTCCAGGGGGATATGATGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCATAAGGGAGTACTTGTAACTTTGACTCCAGGGGGATATGATGC  200

seq1  CCTCTACTAGATTCTATAGGCAACTGCAACACACGTACACATACAGACAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACTAGATTCTATAGGCAACTGCAACACACGTACACATACAGACAC  250

seq1  ACACACACACACACACACACACACACACACACACACACACATTAAAACAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACATTAAAACAA  300

seq1  AGCAAACTTTCAAATAAATTGAATTTAAGGTAGCTGTCTAAGCTTCATCT  348
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCAAACTTTCAAATAAATTGAATTTATGGTAGCTGTCTAAGCTTCATCT  350

seq1  TCTATTGCTGAGATTAAAGTAATCTAACAAATGCAACTTAATCTAGAATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGCTGAGATTAAAGTAATCTAACAAATGCAACTTAATCTAGAATG  400

seq1  ATAGATTAAACTAGAATTTAACCAAGCATGTAAATAAAACTCCCATCAGT  448
      ||||||||||||||||||                  ||||||||||||||
seq2  ATAGATTAAACTAGAATTNNNNNNNNNNNNNNNNNNAAACTCCCATCAGT  450

seq1  AAGATGACCTCACAAAGATTTGGAGCATCGGGATATCAGGTAACAAGTAG  498
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAGATGACCTCACAAAGATTTGGAGCATCTGGATATCAGGTAACAAGTAG  500

seq1  C-TTCTAGAAGCCAGTTGCAGTAGCTATGGGAATCTGGCTCTCAGGGAGC  547
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGAAGCCAGTTGCAGTAGCTATGGGAATCTGGCTCTCAGGGAGC  550

seq1  TTGGCAGGATAGGAGACAGGCTCTGCCAGGCTTGATGAATCTTGGCAGAT  597
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGGCAAGATAGGAGACAGGCTCTGCCAGGCTTGATGAATCTTGGCATAT  600

seq1  TGTATCGGCATCTCGATGTCTTGCTGGGGCGTCCTCACGGGAAGCAATCG  647
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  TGTATCGGCATCTCTATGTCTTGCTGGGGCGTCCTCACGGGAAGCAATCA  650

seq1  AAGGCTGA-TTCATAAGG-AAAAAAAATCACCCACAG-ATCCTCTGAGAT  694
      |||||||| ||||||||| |||||||||||||||||| ||||||||||||
seq2  AAGGCTGATTTCATAAGGAAAAAAAAATCACCCACAGAATCCTCTGAGAT  700

seq1  -GGCCTTTCCTTTC-CCTTTCCTGCCC--TTCTGTT-CCCACAA-TCCAA  738
       || |||||||||| |||| |||||||  ||||||| ||||||| |||||
seq2  GGGTCTTTCCTTTCTCCTTCCCTGCCCCTTTCTGTTCCCCACAATTCCAA  750

seq1  A-TCTTGAGAC-AAAAAGAACAT-CCAT-GGGGATG-CAAT-GGTGTGCC  782
      | ||||||||| ||||||||||| |||| ||||||| |||| ||||||||
seq2  ATTCTTGAGACAAAAAAGAACATCCCATGGGGGATGCCAATGGGTGTGCC  800

seq1  ACA-GTTTCAT-GTTGATGTCCCAGCATAGC-TTCGGTC-TCCCAAGAGT  828
       || ||||||| |||||||||||| |||||| ||||||| ||||||||||
seq2  TCAGGTTTCATGGTTGATGTCCCATCATAGCTTTCGGTCTTCCCAAGAGT  850

seq1  -GTCTCATTTCAAGTA-ACATGG-CCCTT-CCAGTTCAAACAAGT  869
       ||||||||||||| | |||||| ||||| || |||| |||||||
seq2  GGTCTCATTTCAAGGATACATGGTCCCTTCCCGGTTCCAACAAGT  895

seq1: chr11_69239249_69239333
seq2: B6Ng01-078G13.g_76_136 (reverse)

seq1  CCTCCTCCTCCTCAGCCTCCTCCTCCTTTTTTTTTTTTTTTTGGTTTTTT  50
      ||||||||||||   |||||||||||                     |||
seq2  CCTCCTCCTCCT---CCTCCTCCTCC---------------------TTT  26

seq1  TGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCC  85
      |||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCC  61