BAC Information

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BAC

Clone NameB6Ng01-078M23
Chromosome11 (Build37)
Map Location 47,406,188 - 47,556,116
singlet/doubletdoublet
Overlap geneLOC100039647
Upstream geneDppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd, LOC628753
Downstream geneLOC192895, Hn1l-ps2, LOC667163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078M23.bB6Ng01-078M23.g
ACCDH894407DH894408
length1,1401,111
definitionDH894407|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M23, 5' end.DH894408|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,554,958 - 47,556,116)(47,406,188 - 47,407,292)
sequence
gaattcacataccttactacagagagaatattttgtgtattgtatgcata
tatcacctgtcaattaaaaagcatatagcttagacaggaaatagggaatg
ggacatccaggaggagaaagaattctgggatagagccaggtgggagatcc
actcaggaagatattaggagacagatgcatggcatcagagcacaggtaac
cagccatgtgacagaatgtaggttaaaataattggtttatttaggttatc
atatacttagtgtagagcctatctatatggccaaggtatttgtaaatata
ttttgagtctgagtcctatttctgtgaccattgtactggaatgaataatt
aggcttaactactacatattggcacaccacattgggtgccaaatatatat
ttaaaattattaatattccctatatataaattaatgctggaaatttatac
agcagcaattattccttaaccagcattttccctaaataaccacacagaga
ccctaaaatatttcaatgccgtaggccttagctgggcagattgtcaacta
gctcatctcagttaacctgaccacctatccctacccagccacgtggctac
ctctaccttccaggcctgtgatcatgtccatctctttccacgtctcctgg
ctaaaaggatttcctcttcctcctccttctcatcctcctcctcgtccttg
tccatgtcctcccctccctcctcctcttcttcctcttcctcttccttctt
ccagagttcttttttccctactaggaagtttcaccttccacttcctgccc
agctagttggccatcatgctttttattaaagccaatgccttaggaaggtg
aggaaggacagagacacaatttcacacagcaaactccaacaccttaccat
cccaatattgataactactacctagtccatgttcacactttaataatgga
tgctcaccagctgaagtcaactgactctgaaagtctgaaagcagatgtgg
ctataactgactttcactttctcagcctgagctctaaattctcaggtcat
ccatatgcctgggattttgtattctaacccacttttctttgtctggagaa
caagagatcacatgactattctatttactattgttggcaa
gaattctctgcaccatttaaatagttctgtctttatttgctatgcacgta
cagttgaatttgcataaattagatgcacataagctgagcctccactataa
ttgcaaaaaccattgcactggaaataagccttcattgaaatcacattaga
aaccaaaaagattaaatttgatttagaaacatatttagccctatcaagag
gtagattagagaaagtttataaaacaacacagacatacaaaaccagccac
ataaagtctggccagggaatgaaagcaatacatcacaccaatgagcaaca
caatgatggactgggagtcacctgaacactcaaactcttgctcatagaac
ttcagtagctgagaaaagaggtggttgccctcattaatctggcttcaggt
acctcaactatactaagggaatgaaaataccctccagacatattggttta
aatcctggtagcatacatacctctctggatccccaattttcaatttacct
ataaaaccataacagaatttttctgtacctcaaaatggaggattgaggag
ttatctcaaacttgttgcaggttttctgaccagaagactttgaagaatct
catgcttcccggtcttaatgcctgagaagttcctttttaatatttattag
gaatcctcagaatcctgtgaaattacataattacatgacctagctattat
ttcccctttcgatcctcttcccaggcaaatgcagagtgaaattggtcact
tatcataaagtttcccaaacacatgcaagtctaaagaaatgcttgataat
tgttcttagccatctggcaccaagtgatgctcatgaactcgcatgaacca
tttggtaaaattccaaaaacgtcttatcttaatttgacatctcacttact
gaaagtttccaagctgggaaaaattttgtaacacgagaaaatgtttttac
aaaagaaagcaaatgataagatcccccaactcgttacatttcataggaaa
acttataaaacccttcacctgcagccaggtttaactgactagtctcagta
acacttcccaaacacacattcacgtgaaatacatacacatggcctcccgc
tgaagataatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_47554958_47556116
seq2: B6Ng01-078M23.b_44_1183 (reverse)

seq1  TTGCAAACAAATTAGTAAAATAAGAATAGTTCATGTGATCTTCTTGTTTC  50
      |||| |||||  |||||||   ||||||| |||||||||| ||||| |||
seq2  TTGCCAACAA--TAGTAAA--TAGAATAG-TCATGTGATC-TCTTG-TTC  43

seq1  TCCAGACAAAGAAAATAGTGGGTGTAGAAATACAAATCCCCAGGCATATG  100
      ||||||||||||||  ||||||| ||| ||||||||  ||||||||||||
seq2  TCCAGACAAAGAAA--AGTGGGT-TAG-AATACAAAATCCCAGGCATATG  89

seq1  GATGACCTGAGAAATTTAGGAAGCTCCAAGGCTGAGAAAGTTGAAAGTCA  150
      ||||||||||| |||||||  |||||  |||||||||||| |||||||||
seq2  GATGACCTGAG-AATTTAG--AGCTC--AGGCTGAGAAAG-TGAAAGTCA  133

seq1  GTTATAGCCACATTCTGCTTTCAGACTTTCAGAGTCAGTTGACTTCAGCC  200
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  GTTATAGCCACA-TCTGCTTTCAGACTTTCAGAGTCAGTTGACTTCAG-C  181

seq1  TGGTGAGCATCCATTATTAAAGTGTGAACATGGACTAGGTAGTAGTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGCATCCATTATTAAAGTGTGAACATGGACTAGGTAGTAGTTATC  231

seq1  AATATTGGGATGGTAAGGTGTTGGAGTTTGCTGTGTGAAATTGTGTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGGGATGGTAAGGTGTTGGAGTTTGCTGTGTGAAATTGTGTCTCT  281

seq1  GTCCTTCCTCACCTTCCTAAGGCATTGGCTTTAATAAAAAGCATGATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCCTCACCTTCCTAAGGCATTGGCTTTAATAAAAAGCATGATGGC  331

seq1  CAACTAGCTGGGCAGGAAGTGGAAGGTGAAACTTCCTAGTAGGGAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAGCTGGGCAGGAAGTGGAAGGTGAAACTTCCTAGTAGGGAAAAAA  381

seq1  GAACTCTGGAAGAAGGAAGAGGAAGAGGAAGAAGAGGAGGAGGGAGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTGGAAGAAGGAAGAGGAAGAGGAAGAAGAGGAGGAGGGAGGGGA  431

seq1  GGACATGGACAAGGACGAGGAGGAGGATGAGAAGGAGGAGGAAGAGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGGACAAGGACGAGGAGGAGGATGAGAAGGAGGAGGAAGAGGAAA  481

seq1  TCCTTTTAGCCAGGAGACGTGGAAAGAGATGGACATGATCACAGGCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTAGCCAGGAGACGTGGAAAGAGATGGACATGATCACAGGCCTGG  531

seq1  AAGGTAGAGGTAGCCACGTGGCTGGGTAGGGATAGGTGGTCAGGTTAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGAGGTAGCCACGTGGCTGGGTAGGGATAGGTGGTCAGGTTAACT  581

seq1  GAGATGAGCTAGTTGACAATCTGCCCAGCTAAGGCCTACGGCATTGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGCTAGTTGACAATCTGCCCAGCTAAGGCCTACGGCATTGAAAT  631

seq1  ATTTTAGGGTCTCTGTGTGGTTATTTAGGGAAAATGCTGGTTAAGGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGGTCTCTGTGTGGTTATTTAGGGAAAATGCTGGTTAAGGAATA  681

seq1  ATTGCTGCTGTATAAATTTCCAGCATTAATTTATATATAGGGAATATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGCTGTATAAATTTCCAGCATTAATTTATATATAGGGAATATTAA  731

seq1  TAATTTTAAATATATATTTGGCACCCAATGTGGTGTGCCAATATGTAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAAATATATATTTGGCACCCAATGTGGTGTGCCAATATGTAGTA  781

seq1  GTTAAGCCTAATTATTCATTCCAGTACAATGGTCACAGAAATAGGACTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGCCTAATTATTCATTCCAGTACAATGGTCACAGAAATAGGACTCA  831

seq1  GACTCAAAATATATTTACAAATACCTTGGCCATATAGATAGGCTCTACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAAATATATTTACAAATACCTTGGCCATATAGATAGGCTCTACAC  881

seq1  TAAGTATATGATAACCTAAATAAACCAATTATTTTAACCTACATTCTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATATGATAACCTAAATAAACCAATTATTTTAACCTACATTCTGTC  931

seq1  ACATGGCTGGTTACCTGTGCTCTGATGCCATGCATCTGTCTCCTAATATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTGGTTACCTGTGCTCTGATGCCATGCATCTGTCTCCTAATATC  981

seq1  TTCCTGAGTGGATCTCCCACCTGGCTCTATCCCAGAATTCTTTCTCCTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGTGGATCTCCCACCTGGCTCTATCCCAGAATTCTTTCTCCTCC  1031

seq1  TGGATGTCCCATTCCCTATTTCCTGTCTAAGCTATATGCTTTTTAATTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTCCCATTCCCTATTTCCTGTCTAAGCTATATGCTTTTTAATTGA  1081

seq1  CAGGTGATATATGCATACAATACACAAAATATTCTCTCTGTAGTAAGGTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGATATATGCATACAATACACAAAATATTCTCTCTGTAGTAAGGTA  1131

seq1  TGTGAATTC  1159
      |||||||||
seq2  TGTGAATTC  1140

seq1: chr11_47406188_47407292
seq2: B6Ng01-078M23.g_70_1180

seq1  GAATTCTCTGCACCATTTAAATAGTTCTGTCTTTATTTGCTATGCACGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCACCATTTAAATAGTTCTGTCTTTATTTGCTATGCACGTA  50

seq1  CAGTTGAATTTGCATAAATTAGATGCACATAAGCTGAGCCTCCACTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAATTTGCATAAATTAGATGCACATAAGCTGAGCCTCCACTATAA  100

seq1  TTGCAAAAACCATTGCACTGGAAATAAGCCTTCATTGAAATCACATTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAAACCATTGCACTGGAAATAAGCCTTCATTGAAATCACATTAGA  150

seq1  AACCAAAAAGATTAAATTTGATTTAGAAACATATTTAGCCCTATCAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAAAGATTAAATTTGATTTAGAAACATATTTAGCCCTATCAAGAG  200

seq1  GTAGATTAGAGAAAGTTTATAAAACAACACAGACATACAAAACCAGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTAGAGAAAGTTTATAAAACAACACAGACATACAAAACCAGCCAC  250

seq1  ATAAAGTCTGGCCAGGGAATGAAAGCAATACATCACACCAATGAGCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTCTGGCCAGGGAATGAAAGCAATACATCACACCAATGAGCAACA  300

seq1  CAATGATGGACTGGGAGTCACCTGAACACTCAAACTCTTGCTCATAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATGGACTGGGAGTCACCTGAACACTCAAACTCTTGCTCATAGAAC  350

seq1  TTCAGTAGCTGAGAAAAGAGGTGGTTGCCCTCATTAATCTGGCTTCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAGCTGAGAAAAGAGGTGGTTGCCCTCATTAATCTGGCTTCAGGT  400

seq1  ACCTCAACTATACTAAGGGAATGAAAATACCCTCCAGACATATTGGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAACTATACTAAGGGAATGAAAATACCCTCCAGACATATTGGTTTA  450

seq1  AATCCTGGTAGCATACATACCTCTCTGGATCCCCAATTTTCAATTTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGGTAGCATACATACCTCTCTGGATCCCCAATTTTCAATTTACCT  500

seq1  ATAAAACCATAACAGAATTTTTCTGTACCTCAAAATGGAGGATTGAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCATAACAGAATTTTTCTGTACCTCAAAATGGAGGATTGAGGAG  550

seq1  TTATCTCAAACTTGTTGCAGGTTTTCTGACCAGAAGACTTTGAAGAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCAAACTTGTTGCAGGTTTTCTGACCAGAAGACTTTGAAGAATCT  600

seq1  CATGCTTCCCGGTCTTAATGCCTGAGAAGTTCCTTTTTAATATTTATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTCCCGGTCTTAATGCCTGAGAAGTTCCTTTTTAATATTTATTAG  650

seq1  GAATCCTCAGAATCCTGTG-AATTACATAATTACATGACCTAGCTATTAT  699
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAATCCTCAGAATCCTGTGAAATTACATAATTACATGACCTAGCTATTAT  700

seq1  TTCCCC-TTCGATCCTCTTCCCAGGCAAATGCAGAGTGAAATTGGTCACT  748
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTTCGATCCTCTTCCCAGGCAAATGCAGAGTGAAATTGGTCACT  750

seq1  TATCATAAAGTTTCCCAAACACATGCAAGTCTAAAGAAATGCTTGATAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAAAGTTTCCCAAACACATGCAAGTCTAAAGAAATGCTTGATAAT  800

seq1  TGTTCTTAGCCATCTGGCACCAAGTGATGCTCATGAACTCGCATGAACCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAGCCATCTGGCACCAAGTGATGCTCATGAACTCGCATGAACCA  850

seq1  TTTGGTAAAATTCCAAAAACGTC-TATCTTAATTTGACATCTCACTTACT  897
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTGGTAAAATTCCAAAAACGTCTTATCTTAATTTGACATCTCACTTACT  900

seq1  GAAAG-TTCCAAGCTGG--AAAAATTTGTAACACGAGAAAATGTTTTACA  944
      ||||| |||||||||||  |||| |||||||||||||||||||||||   
seq2  GAAAGTTTCCAAGCTGGGAAAAATTTTGTAACACGAGAAAATGTTTTTAC  950

seq1  AAAAGAAAGCAAATGATAAGATCCCCCAACTCGTTTACATTTCATAGGAA  994
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAAGAAAGCAAATGATAAGATCCCCCAACTCG-TTACATTTCATAGGAA  999

seq1  AACTTATAAAACCCTTCACCTGCAGCCAGGTTTAACTGACTAGTCTCAGG  1044
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AACTTATAAAACCCTTCACCTGCAGCCAGGTTTAACTGACTAGTCTCA-G  1048

seq1  TAACACTTCCCAAACACACATGCACGTG-AATACATACACATGGCCCACC  1093
      ||||||||||||||||||||| |||||| |||||||||||||||||  ||
seq2  TAACACTTCCCAAACACACATTCACGTGAAATACATACACATGGCCTCCC  1098

seq1  GCTG-AGATAATG  1105
      |||| ||||||||
seq2  GCTGAAGATAATG  1111