BAC Information

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BAC

Clone NameB6Ng01-079C12
Chromosome11 (Build37)
Map Location 29,166,884 - 29,345,584
singlet/doubletdoublet
Overlap geneLOC672637, LOC100042985, A430106J12Rik
Upstream geneEG626571, Ccdc85a, Efemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104
Downstream gene2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079C12.bB6Ng01-079C12.g
ACCDH894651DH894652
length7811,072
definitionDH894651|Mus musculus domesticus DNA, BAC clone: B6Ng01-079C12, 5' end.DH894652|Mus musculus domesticus DNA, BAC clone: B6Ng01-079C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,344,811 - 29,345,584)(29,166,884 - 29,167,961)
sequence
gaattctaaacgtcctacccctacctccactgttccaagattacaggtgt
gcagcaccatgtgtaacttcttgattccacttctaaagtgacagaacttg
aagataaaaacaaagtagtgcttggtatgagattgaaccacctgctttca
aggaagatctcacgactttgtagtgatccttttacttacattgatttctg
ggcaaactgccccatagagactttgtaaatgatctctttgcttcaaactg
aaaactggtataatttcttcttgacaaacgacctcttctctaactaatca
cctataattagtccctcattattatacattttccattcaaaacatactcc
tcattacaggatttttaatatctttcctatatttttccttcctgtttttt
tttttttttttttttttcagattcatgttgtgcttttatttttttttttt
ttttcatttttttttattaggtatttagctcatttacatttccaatgcta
tgccaaaagtcccccttacccacccacccccactcccctacccacccact
ccccccctttggccctggcgttcccctgtaccggggcacacaaagtctgc
gtgtccaaggggcctctcttttccagtgatggccgactaggccatctttt
tgaaacatatgcagctaaagtcaaaagctcagggggtactggttagttca
taaatgttgttccacctataggggtgaagatccctttagctccttggggt
actttctccaagcttcttccattgggagccc
gaattcctagctagatatgtattccaggtttggcagagtggggggcatgt
taggtaatttaagtgcctatgagagagagagagagagtgcatttgagtct
ctaagacagctacaggcctttataggacagaaaattttgtatcagaaata
ccataaaagcctgtggagttagctggtccagtggcatatacactttaagc
ccagcactctgatggcagaggaagatgaatctctgagtttgaggtcagcc
tggtctacagagcaagtttcagtacagctaggctacacagagaaactttg
tcttggaaaacaaaaacaaaaaacctccagagtctaaaaaaagcctcagc
aagtctgatgtttaaacatcatgccccgcctaggaagggaaggcaacacc
catttaggtagggtaaaaaaagaatgactaaaaatattcatctagtatac
atattaaggaggctgtgggctaacgtgatggctctgtggttaagagtgct
tgctgcttcttccagaggtcctaagctcaactgtcagcacacaaccctca
ataagtccagttccaggggacccagtgcactcttctgacctcttctgaca
ctaggcatgtatacattggcaaaactgtcacacaaataaaatattttttt
ttaaaacttcaaaataaaaaaggagggtgtaaattgaacttatttgggac
tttgctattgatagcaatgagaaggaccagggttcagaagttctaacaag
aagtggtcagggcagaaaaatcactcccatattgatatgaaatataattg
tgatccctgctatctgagagtcggtaggtgctcattcattagagatggga
aatgcaagagactgtatagcaccctgggaccatcaattctcaaagcagag
gggctcttttcctctggagcatttcacagttcaagaacaaagttgggagc
actggttctttttttcaaaaagaagtgaggcatgaggtcctttgatggaa
atgggaagaggggatatttctcttcagaatgttccactttacggactgat
atgtcctggattggggcatcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_29344811_29345584
seq2: B6Ng01-079C12.b_44_824 (reverse)

seq1  GGGCTCCCAATGG-AGGAGC-TAGAGAAAGTA-CCCAAGGAGCTAAAGGG  47
      ||||||||||||| || ||| | ||||||||| |||||||||||||||||
seq2  GGGCTCCCAATGGAAGAAGCTTGGAGAAAGTACCCCAAGGAGCTAAAGGG  50

seq1  ATCTTCAACCCTATAGGTGGAACAACA-TTATGAACTAACCAGTA-CCCC  95
      ||||||| ||||||||||||||||||| ||||||||||||||||| ||||
seq2  ATCTTCACCCCTATAGGTGGAACAACATTTATGAACTAACCAGTACCCCC  100

seq1  TGAGCTCTTGACTCTAGCTGCATATGTATC-AAAAGATGGCCTAGTCGGC  144
      |||||| |||||| ||||||||||||| || |||||||||||||||||||
seq2  TGAGCTTTTGACTTTAGCTGCATATGTTTCAAAAAGATGGCCTAGTCGGC  150

seq1  CATCACTGG-AAAGAGAGGCCCATTGGACACGCAGACTTTGTGTGCCCCG  193
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  CATCACTGGAAAAGAGAGGCCCCTTGGACACGCAGACTTTGTGTGCCCCG  200

seq1  GTACAGGGGAACGCCAGGGCCAAAGGGGGGGAGTGGGTGGGTAGGGGAGT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGGGAACGCCAGGGCCAAAGGGGGGGAGTGGGTGGGTAGGGGAGT  250

seq1  GGGGGTGGGTGGGTAAGGGGGACTTTTGGCATAGCATTGGAAATGTAAAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGGGTGGGTAAGGGGGACTTTTGGCATAGCATTGGAAATGTAAAT  300

seq1  GAGCTAAATACCTAATAAAAAAAAATGAAAAAAAAAAAAAAAATAAAAGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAAATACCTAATAAAAAAAAATGAAAAAAAAAAAAAAAATAAAAGC  350

seq1  ACAACATGAATCTGAAAAAAAAAAAAAAAAAAAAAAACAGGAAGGAAAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATGAATCTGAAAAAAAAAAAAAAAAAAAAAAACAGGAAGGAAAAA  400

seq1  TATAGGAAAGATATTAAAAATCCTGTAATGAGGAGTATGTTTTGAATGGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGAAAGATATTAAAAATCCTGTAATGAGGAGTATGTTTTGAATGGA  450

seq1  AAATGTATAATAATGAGGGACTAATTATAGGTGATTAGTTAGAGAAGAGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATAATAATGAGGGACTAATTATAGGTGATTAGTTAGAGAAGAGG  500

seq1  TCGTTTGTCAAGAAGAAATTATACCAGTTTTCAGTTTGAAGCAAAGAGAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTGTCAAGAAGAAATTATACCAGTTTTCAGTTTGAAGCAAAGAGAT  550

seq1  CATTTACAAAGTCTCTATGGGGCAGTTTGCCCAGAAATCAATGTAAGTAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACAAAGTCTCTATGGGGCAGTTTGCCCAGAAATCAATGTAAGTAA  600

seq1  AAGGATCACTACAAAGTCGTGAGATCTTCCTTGAAAGCAGGTGGTTCAAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCACTACAAAGTCGTGAGATCTTCCTTGAAAGCAGGTGGTTCAAT  650

seq1  CTCATACCAAGCACTACTTTGTTTTTATCTTCAAGTTCTGTCACTTTAGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACCAAGCACTACTTTGTTTTTATCTTCAAGTTCTGTCACTTTAGA  700

seq1  AGTGGAATCAAGAAGTTACACATGGTGCTGCACACCTGTAATCTTGGAAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAATCAAGAAGTTACACATGGTGCTGCACACCTGTAATCTTGGAAC  750

seq1  AGTGGAGGTAGGGGTAGGACGTTTAGAATTC  774
      |||||||||||||||||||||||||||||||
seq2  AGTGGAGGTAGGGGTAGGACGTTTAGAATTC  781

seq1: chr11_29166884_29167961
seq2: B6Ng01-079C12.g_70_1141

seq1  GAATTCCTAGCAAGATATGTATTCCAGGTTTGGCAGAGTGGGGGGCATGT  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGCTAGATATGTATTCCAGGTTTGGCAGAGTGGGGGGCATGT  50

seq1  TAGGTAATTTAAGTGCCTATGAGAGAGAGAGAGAGAGTGCATTTGAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAATTTAAGTGCCTATGAGAGAGAGAGAGAGAGTGCATTTGAGTCT  100

seq1  CTAAGACAGCTACAGGCCTTTATAGGACAGAAAATTTTGTATCAGAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACAGCTACAGGCCTTTATAGGACAGAAAATTTTGTATCAGAAATA  150

seq1  CCATAAAAGCCTGTGGAGTTAGCTGGTCCAGTGGCATATACACTTTAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAAGCCTGTGGAGTTAGCTGGTCCAGTGGCATATACACTTTAAGC  200

seq1  CCAGCACTCTGATGGCAGAGGAAGATGAATCTCTGAGTTTGAGGTCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCTGATGGCAGAGGAAGATGAATCTCTGAGTTTGAGGTCAGCC  250

seq1  TGGTCTACAGAGCAAGTTTCAGTACAGCTAGGCTACACAGAGAAACTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAGAGCAAGTTTCAGTACAGCTAGGCTACACAGAGAAACTTTG  300

seq1  TCTTGGAAAACAAAAACAAAAAACCTCCAGAGTCTAAAAAAAGCCTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAAAACAAAAACAAAAAACCTCCAGAGTCTAAAAAAAGCCTCAGC  350

seq1  AAGTCTGATGTTTAAACATCATGCCCCGCCTAGGAAGGGAAGGCAACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGATGTTTAAACATCATGCCCCGCCTAGGAAGGGAAGGCAACACC  400

seq1  CATTTAGGTAGGGTAAAAAAAGAATGACTAAAAATATTCATCTAGTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGGTAGGGTAAAAAAAGAATGACTAAAAATATTCATCTAGTATAC  450

seq1  ATATTAAGGAGGCTGTGGGCTAACGTGATGGCTCTGTGGTTAAGAGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGGAGGCTGTGGGCTAACGTGATGGCTCTGTGGTTAAGAGTGCT  500

seq1  TGCTGCTTCTTCCAGAGGTCCTAAGCTCAACTGTCAGCACACAACCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTTCTTCCAGAGGTCCTAAGCTCAACTGTCAGCACACAACCCTCA  550

seq1  ATAAGTCCAGTTCCAGGGGACCCAGTGCACTCTTCTGACCTCTTCTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCCAGTTCCAGGGGACCCAGTGCACTCTTCTGACCTCTTCTGACA  600

seq1  CTAGGCATGTATACATTGGCAAAACTGTCACACAAATAAAATATTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCATGTATACATTGGCAAAACTGTCACACAAATAAAATATTTTTTT  650

seq1  TTAAAACTTCAAAATAAAAAAGGAGGGTGTAAATTGAACTTA-TTGGGAC  699
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTAAAACTTCAAAATAAAAAAGGAGGGTGTAAATTGAACTTATTTGGGAC  700

seq1  -TTGCTATTGATAGCAATGAGAAGGACCAGGGTTCAGAAGTTCTAACAAG  748
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATTGATAGCAATGAGAAGGACCAGGGTTCAGAAGTTCTAACAAG  750

seq1  AAGTGGTCAGGGCAGAAAAATCACTCCCATATTGATATGAAATATAATTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTCAGGGCAGAAAAATCACTCCCATATTGATATGAAATATAATTG  800

seq1  TGATCCCTGCTATTCTGAGAGTCGGTAGGTGCTCATTCA-TAGAGATGGA  847
      |||||||||||| |||||||||||||||||||||||||| ||||||||| 
seq2  TGATCCCTGCTA-TCTGAGAGTCGGTAGGTGCTCATTCATTAGAGATGGG  849

seq1  AAATGCAAGAGACTGTATAGCACCCGGGACCCATCAATTCTCAAAGCAGA  897
      ||||||||||||||||||||||||| ||  ||||||||||||||||||||
seq2  AAATGCAAGAGACTGTATAGCACCCTGGGACCATCAATTCTCAAAGCAGA  899

seq1  GGGGCCTCTTTCCCTCTGGAGCATTTCACAGTCCAGGAACAAAGTTGGGA  947
      |||| |||||| |||||||||||||||||||| || ||||||||||||||
seq2  GGGG-CTCTTTTCCTCTGGAGCATTTCACAGTTCAAGAACAAAGTTGGGA  948

seq1  GCACTTGTTCTTTTTTTTTCAAAAAAGAAGTGA-GCATGAGGTCCTTGGA  996
      ||||| |||||||||||    |||||||||||| ||||||||||||| ||
seq2  GCACTGGTTCTTTTTTT---CAAAAAGAAGTGAGGCATGAGGTCCTTTGA  995

seq1  TGGAAATTGGGAGAGGGGATA-TTCTCTTCCAGTATGTTCCCACTTTAAC  1045
      ||||||| || |||||||||| ||||||| ||| ||||| ||||||| ||
seq2  TGGAAATGGGAAGAGGGGATATTTCTCTT-CAGAATGTT-CCACTTT-AC  1042

seq1  GGACTGGATATGGTTCTTGGATGGGGGCATCGA  1078
      ||||| ||||||  || ||||| ||||||||||
seq2  GGACT-GATATG--TCCTGGATTGGGGCATCGA  1072