BAC Information

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BAC

Clone NameB6Ng01-079C21
Chromosome11 (Build37)
Map Location 50,699,297 - 50,887,484
singlet/doubletdoublet
Overlap geneZfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275
Upstream geneMapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6
Downstream geneLOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079C21.bB6Ng01-079C21.g
ACCDH894667DH894668
length1,1211,037
definitionDH894667|Mus musculus domesticus DNA, BAC clone: B6Ng01-079C21, 5' end.DH894668|Mus musculus domesticus DNA, BAC clone: B6Ng01-079C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,699,297 - 50,700,431)(50,886,443 - 50,887,484)
sequence
gaattcaggtgtaagccaccatacccagctttgtgtgtgtatatgtgcca
gctttgtgagagtgtgtgtgtggtgctggagactgaacttagagccctat
acatgccaaccaagtattctaccacaaaactatccccctagcctatagaa
gtagagttcttcaattatttttgtactaatcctatatattcttcttaaac
aaaagttacacgttatctttaaaagacatcaataactacgtggcgtctag
gacaccccatgttcacgggaaacagttcaaatttcttctttagatcctat
gtcagttcctgcctttaccattttggaccaccatcttactggctaacaga
agtagaaaggttttcattttatactaacctagaatcctgcccagatgtgc
cactttcatgccttacagaaagctctaaagctcactaggaggagatgtgt
ggtgggagggagcagctggggtctttgggggtggctggaaaggaagcttc
tggttagagcaatgaatgaagtcaaggacacaactggggatacaggggga
caacactggacagtgatgactcacctggaccagggccgggagctggctga
cagccattccttttctctggtgagctgaggagcattgagtaggaaggagg
caggggaggagctttacaattgctggggttctctggctagaagcatctgc
actcctgtaatgagagggccgggtcaaaggtcacagggatgcgcctcacc
attcacatcctggctcactttgttcttttgctcccagtgcatactccctc
tgaaggtagctgtcctcacccaatctgtaaagtgacttctccccatgcca
gctctccttcgcatctttcctttagtcagatcctgcatgccttcccgttt
gtgtggctttggctttccctgcagaagcttgcccggccagtcctcaactc
tacccattctctgtcccttcccctgcagctatgctttggcgtcttaagac
agcctttcctctgggacagctcttttcccaactagagggaaggaggagca
aagaagtgactttttctgaaaggagggagtactgcagatcttctcttctc
tgtctctctctcctgctctct
gaattcctaccctctgaggacatctgctgagagtgatgaggactaatctg
gacattggtcattgcttctctgtccctattttgagcactgagatatcttg
gaataaaagcttcaatgaagcccagtaaagggttccagggctatgatcac
ctggagtactctggttctgttgtacttcaaatccaacttcaactttcata
tcagtcactagagggtcaccataggagatgcaggtagatgagacaagcgc
tgtgggtactggaaaccaaacttcagcttctctggaatagcatccagcac
ctggatgagccatcgtgcccttctgatcactgacaataagagccacaaca
aaagtgctcatcccaccaagcaagaacaaccccccacccccaattacagc
caattaagcaagctctatttactatgcataggactgactctcagagtcgg
aatttgagagagcagtgtgggttcacttttcaggactcttgttatagtga
aaaagtataaactgggagctttcaaaagaatttggtgatgtagggatttg
gcaagcaatttctttttatattcggcaagcaggcagccaattagattgtc
tgacagatcatcttagcggacatctcatcaggatggagtacatctgaggt
gtgagttgaactccattgagtgggggaacgtgtcaatttccagaaccagg
ttaaatcacagttaacttgaatttttgcagcaaacagaaatgagcttact
ttgagcttgtaacaaaatggtgtttaactttaagatggagtcaggctggt
ccaccaaaaggatatgagaagctattgtttgacaggccccctaccaccac
caccaagtacaggtgttggaaaacaaaatctccaatttaacatcactgag
aggtagagaatttagatgaattgattgttgttattatggagtattgggag
atggcttcagccacattatgtggtagtaagggcctcactcggtgtgactt
ttcagcttcattctgcaaaaatttctctatataaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_50699297_50700431
seq2: B6Ng01-079C21.b_51_1171

seq1  GAATTCAGGTGTAAGCCACCATACCCAGCTTTGTGTGTGTATATGTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGTAAGCCACCATACCCAGCTTTGTGTGTGTATATGTGCCA  50

seq1  GCTTTGTGAGAGTGTGTGTGTGGTGCTGGAGACTGAACTTAGAGCCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGAGAGTGTGTGTGTGGTGCTGGAGACTGAACTTAGAGCCCTAT  100

seq1  ACATGCCAACCAAGTATTCTACCACAAAACTATCCCCCTAGCCTATAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCAACCAAGTATTCTACCACAAAACTATCCCCCTAGCCTATAGAA  150

seq1  GTAGAGTTCTTCAATTATTTTTGTACTAATCCTATATATTCTTCTTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTTCTTCAATTATTTTTGTACTAATCCTATATATTCTTCTTAAAC  200

seq1  AAAAGTTACACGTTATCTTTAAAAGACATCAATAACTACGTGGCGTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTACACGTTATCTTTAAAAGACATCAATAACTACGTGGCGTCTAG  250

seq1  GACACCCCATGTTCACGGGAAACAGTTCAAATTTCTTCTTTAGATCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCCATGTTCACGGGAAACAGTTCAAATTTCTTCTTTAGATCCTAT  300

seq1  GTCAGTTCCTGCCTTTACCATTTTGGACCACCATCTTACTGGCTAACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTCCTGCCTTTACCATTTTGGACCACCATCTTACTGGCTAACAGA  350

seq1  AGTAGAAAGGTTTTCATTTTATACTAACCTAGAATCCTGCCCAGATGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAGGTTTTCATTTTATACTAACCTAGAATCCTGCCCAGATGTGC  400

seq1  CACTTTCATGCCTTACAGAAAGCTCTAAAGCTCACTAGGAGGAGATGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCATGCCTTACAGAAAGCTCTAAAGCTCACTAGGAGGAGATGTGT  450

seq1  GGTGGGAGGGAGCAGCTGGGGTCTTTGGGGGTGGCTGGAAAGGAAGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGGGAGCAGCTGGGGTCTTTGGGGGTGGCTGGAAAGGAAGCTTC  500

seq1  TGGTTAGAGCAATGAATGAAGTCAAGGACACAACTGGGGATACAGGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGAGCAATGAATGAAGTCAAGGACACAACTGGGGATACAGGGGGA  550

seq1  CAACACTGGACAGTGATGACTCACCTGGACCAGGGCCGGGAGCTGGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGGACAGTGATGACTCACCTGGACCAGGGCCGGGAGCTGGCTGA  600

seq1  CAGCCATTCCTTTTCTCTGGTGAGCTGAGGAGCATTGAGTAGGAAGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTCCTTTTCTCTGGTGAGCTGAGGAGCATTGAGTAGGAAGGAGG  650

seq1  CAGGGGAGGAGCTTTACAATTGCTGGGGTTCTCTGGCTAGAAGCATCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAGGAGCTTTACAATTGCTGGGGTTCTCTGGCTAGAAGCATCTGC  700

seq1  ACTCCTGTAATGAGAGGGCCGGGTCAAAGGTCACAGGGATGCGCCTCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGTAATGAGAGGGCCGGGTCAAAGGTCACAGGGATGCGCCTCACC  750

seq1  ATTCACATCCTGGCTCACTTTGTTCTTTTGCTCCCAGTGCATACTCCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATCCTGGCTCACTTTGTTCTTTTGCTCCCAGTGCATACTCCCTC  800

seq1  TGAAGGTAGCTGTCCTCACCCAATCTGTAAAGTGACTTCTCCCCATGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTAGCTGTCCTCACCCAATCTGTAAAGTGACTTCTCCCCATGCCA  850

seq1  GCTCTCCTTCGCATCTTTCCTTTAGTCAGATCCTGCATGCCTTCCCGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTTCGCATCTTTCCTTTAGTCAGATCCTGCATGCCTTCCCGTTT  900

seq1  GTGTGGCTTTGGCTTTCCCCTGCAGAAAGCTTGCCCGGCCCAGTCCTCAA  950
      |||||||||||||||| |||||||| |||||||||||| ||||||||| |
seq2  GTGTGGCTTTGGCTTT-CCCTGCAG-AAGCTTGCCCGG-CCAGTCCTC-A  946

seq1  ACTCTACCCATTCTCTGTCCCTTCCCCTGCAGCTATGCTTTGGCGTCTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACCCATTCTCTGTCCCTTCCCCTGCAGCTATGCTTTGGCGTCTTA  996

seq1  AGACAGCCTTTCCTCCTGGGACAGCTC-TATCCCAACTAGAGGGAAGGAG  1049
      |||||||||||||| |||||||||||| | ||||||||||||||||||||
seq2  AGACAGCCTTTCCT-CTGGGACAGCTCTTTTCCCAACTAGAGGGAAGGAG  1045

seq1  GAGGCAAAGAGGTGACTTTTTCCTGAAAGGGAAGGGGAGTTAAACCGGCC  1099
      || ||||||| |||||||||| ||||||||    ||||||   || |  |
seq2  GA-GCAAAGAAGTGACTTTTT-CTGAAAGG---AGGGAGT---ACTG--C  1085

seq1  AGATCTCTCTC-TCTCTCTCTCTCTCTCTCTCTCTCT  1135
      |||||| |||| ||||| ||||||||||   ||||||
seq2  AGATCT-TCTCTTCTCTGTCTCTCTCTCCTGCTCTCT  1121

seq1: chr11_50886443_50887484
seq2: B6Ng01-079C21.g_68_1104 (reverse)

seq1  AATTTATAATGAGATGAAATTTTTTGCAGTAATGATAGCTGAAAAGTCTA  50
      ||||||||  |||    || ||||||||| ||||| |||||||||||| |
seq2  AATTTATATAGAG----AAATTTTTGCAG-AATGA-AGCTGAAAAGTC-A  43

seq1  CACCGGGTGAGGGCCTTACTACAACATAATCTGGCTGAAGCCATCTCCCA  100
      ||||| |||||| ||||||||| ||||||| |||||||||||||||||||
seq2  CACCGAGTGAGGCCCTTACTACCACATAATGTGGCTGAAGCCATCTCCCA  93

seq1  ATACTCCATAATAACAACAATCAATTCATCTAAATTCTCTACCTCTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCATAATAACAACAATCAATTCATCTAAATTCTCTACCTCTCAGT  143

seq1  GATGTTAAATTGGAGATTTTG-TTTCCAACACCTGTACTTGGTGGTGGTG  199
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATGTTAAATTGGAGATTTTGTTTTCCAACACCTGTACTTGGTGGTGGTG  193

seq1  GTAGGGGGCCTGTCAAACAATAGCTTCTCATATCCTTTTGGTGGACCAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGGCCTGTCAAACAATAGCTTCTCATATCCTTTTGGTGGACCAGC  243

seq1  CTGACTCCATCTTAAAGTTAAACACCATTTTGTTACAAGCTCAAAGTAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCCATCTTAAAGTTAAACACCATTTTGTTACAAGCTCAAAGTAAG  293

seq1  CTCATTTCTGTTTGCTGC-AAAATTCAAGTTAACTGTGATTTAACCTGGT  348
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTCATTTCTGTTTGCTGCAAAAATTCAAGTTAACTGTGATTTAACCTGGT  343

seq1  TCTGGAAATTGACACGTTCCCCCACTCAATGGAGTTCAACTCACACCTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAATTGACACGTTCCCCCACTCAATGGAGTTCAACTCACACCTCA  393

seq1  GATGTACTCCATCCTGATGAGATGTCCGCTAAGATGATCTGTCAGACAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACTCCATCCTGATGAGATGTCCGCTAAGATGATCTGTCAGACAAT  443

seq1  CTAATTGGCTGCCTGCTTGCCGAATATAAAAAGAAATTGCTTGCCAAATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGGCTGCCTGCTTGCCGAATATAAAAAGAAATTGCTTGCCAAATC  493

seq1  CCTACATCACCAAATTCTTTTGAAAGCTCCCAGTTTATACTTTTTCACTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATCACCAAATTCTTTTGAAAGCTCCCAGTTTATACTTTTTCACTA  543

seq1  TAACAAGAGTCCTGAAAAGTGAACCCACACTGCTCTCTCAAATTCCGACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGAGTCCTGAAAAGTGAACCCACACTGCTCTCTCAAATTCCGACT  593

seq1  CTGAGAGTCAGTCCTATGCATAGTAAATAGAGCTTGCTTAATTGGCTGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTCAGTCCTATGCATAGTAAATAGAGCTTGCTTAATTGGCTGTA  643

seq1  ATTGGGGGTGGGGGGTTGTTCTTGCTTGGTGGGATGAGCACTTTTGTTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGGTGGGGGGTTGTTCTTGCTTGGTGGGATGAGCACTTTTGTTGT  693

seq1  GGCTCTTATTGTCAGTGATCAGAAGGGCACGATGGCTCATCCAGGTGCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTATTGTCAGTGATCAGAAGGGCACGATGGCTCATCCAGGTGCTG  743

seq1  GATGCTATTCCAGAGAAGCTGAAGTTTGGTTTCCAGTACCCACAGCGCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTATTCCAGAGAAGCTGAAGTTTGGTTTCCAGTACCCACAGCGCTT  793

seq1  GTCTCATCTACCTGCATCTCCTATGGTGACCCTCTAGTGACTGATATGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATCTACCTGCATCTCCTATGGTGACCCTCTAGTGACTGATATGAA  843

seq1  AGTTGAAGTTGGATTTGAAGTACAACAGAACCAGAGTACTCCAGGTGATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAGTTGGATTTGAAGTACAACAGAACCAGAGTACTCCAGGTGATC  893

seq1  ATAGCCCTGGAACCCTTTACTGGGCTTCATTGAAGCTTTTATTCCAAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTGGAACCCTTTACTGGGCTTCATTGAAGCTTTTATTCCAAGAT  943

seq1  ATCTCAGTGCTCAAAATAGGGACAGAGAAGCAATGACCAATGTCCAGATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTGCTCAAAATAGGGACAGAGAAGCAATGACCAATGTCCAGATT  993

seq1  AGTCCTCATCACTCTCAGCAGATGTCCTCAGAGGGTAGGAATTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCATCACTCTCAGCAGATGTCCTCAGAGGGTAGGAATTC  1037