BAC Information

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BAC

Clone NameB6Ng01-079E24
Chromosome11 (Build37)
Map Location 102,432,871 - 102,584,291
singlet/doubletdoublet
Overlap geneLOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43
Upstream geneNbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1
Downstream geneAdam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079E24.bB6Ng01-079E24.g
ACCDH894756DH894757
length4471,085
definitionDH894756|Mus musculus domesticus DNA, BAC clone: B6Ng01-079E24, 5' end.DH894757|Mus musculus domesticus DNA, BAC clone: B6Ng01-079E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,432,871 - 102,433,422)(102,583,200 - 102,584,291)
sequence
cttccaacatctgaatatgaggctccttaggtttagcagcaggtcccttt
actctctgaatttttagaagttttgtttattaccatgacacatgcatgta
tgatacatgggtttgcatgcaggcacccacacaccacagcacacatgtgt
ggaggtcaggttcaggagtgcattctccccatctgccttgagacccaggg
tgcaaactcaggcctttaggcttcctcctcctcctcctcctcttcctcct
cttcttcctcttccttcttttcttatagtactgaggattgaatctaagcc
ttgtcccttgctaggcaagcactctattactgaatcacataactggccct
tttaaaaaaaattttttttaatttatttaatatgagtacattgtagctgt
cttcagacacaccagaagagggcatcagatcttattacagatggttt
gaattccaggatagccagggctacatagcaaaaccctgtctcaaaataaa
ataaaataaaatacagtaacaaaaactaaaagaacccataaaactctttc
cagattagggtaccaagcaacccagagatgttttattttgagagcttcac
ttgatctgagtgatattggaaataaaagccgggtcattagcagactgaag
agatggggaagcccaaaatgaataatatattccatgagagtagtggttcc
tgataaggcctttgctcttttactagggaatttctctgtctacctggtct
atgggaataacttcatgcttgagtctcttgctcttggttggggacaccat
gagggaaatctgtttgctagtatcccgctggcagaggtctactgccttgg
tcaggctgtaggaagggaaggggtgtgaaccccaccccctaggactggcc
ccacattctgtggcttaaagtctaaggaacctgtgtgcctgtgaaacgaa
tttagaatttggtggctgtcagatcgcaaatgtgtctttatgaaaattgt
taagggatccagggagagccgcttgttttcaggattttgtaccccactcc
ccaggagtggcaaagccccatctcagctttttaggtatccgagggtgtac
tcaggatgtgggagagtgtatccaggaactgaaggccctcggggaatgga
agctgaggggctgcttagcctgctaatctgcttggttgttggtagtcccg
gagagatgctagtgcgctttgcatcggtaaaggccagacaggatctcaag
cctacatgtttatttgggatacaatgggtagtacaatgactaggccctct
gtcttcagatggctgtggggatgtgggtcataggtaaattcagaccgaat
ctacagatgttccacgcttgcttccagctgcaaagccctagcggaggcat
tagttaccgccttttgaggggacatgaaattatccaggagtcagagttga
ggatctctgtgagtctctgtgttaaaccagaaaaccatccttcaggttga
tagccagtctgaggtttaaaaatcccgagatctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102432871_102433422
seq2: B6Ng01-079E24.b_41_492

seq1  GAATTCCTTCCAACATCTGAATATGAGGCTCCTTAGGTTTAGCAGCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCAACATCTGAATATGAGGCTCCTTAGGTTTAGCAGCAGGT  50

seq1  CCCTTTACTCTCTGAATTTTTAGAAGTTTTGTTTATTACCATGACACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTACTCTCTGAATTTTTAGAAGTTTTGTTTATTACCATGACACATG  100

seq1  CATGTATGATACATGGGTTTGCATGCAGGCACCCACACACCACAGCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGATACATGGGTTTGCATGCAGGCACCCACACACCACAGCACAC  150

seq1  ATGTGTGGAGGTCAGGTTCAGGAGTGCATTCTCCCCATCTGCCTTGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGAGGTCAGGTTCAGGAGTGCATTCTCCCCATCTGCCTTGAGAC  200

seq1  CCAGGGTGCAAACTCAGGCCTTTAGGCTTCCTCCTCCTCCTCCTCCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTGCAAACTCAGGCCTTTAGGCTTCCTCCTCCTCCTCCTCCTCTT  250

seq1  CCTCCTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTTTTTGGTTT  300
      |||||||||||||||| |||| ||              || || | ||  
seq2  CCTCCTCTTCTTCCTCTTCCTTCT-------------TTTCTTATAGT--  285

seq1  TTTCGAGACAGGATT-TCTCTGTGTAGCCGTGGCTGTCCTGGAACTCATT  349
           |   ||||||   |||    |||| || |   ||| |        
seq2  -----ACTGAGGATTGAATCT---AAGCCTTGTC---CCTTG--------  316

seq1  CTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCC  399
             | ||||  ||     |||                         
seq2  -------CTAGGCAAGC-----ACT-------------------------  329

seq1  CAAGTGCTGGGATCAAAGGCATGCACCACCACTGCCCAGTTTCTTCTTCT  449
      | | | || | ||||           ||  |||| ||           ||
seq2  CTATTACT-GAATCA-----------CATAACTGGCC-----------CT  356

seq1  TTTTCTTAAAGAATTATTTATTTATTTTATGTGTATATATGAGCACACTG  499
      |    ||||| ||   ||| |||| |||||   |  ||||||| ||| ||
seq2  T----TTAAAAAAAATTTTTTTTAATTTAT---TTAATATGAGTACATTG  399

seq1  TTGTTCTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATG  549
      | | | ||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTTATTACAGATG  449

seq1  GTT  552
      |||
seq2  GTT  452

seq1: chr11_102583200_102584291
seq2: B6Ng01-079E24.g_68_1152 (reverse)

seq1  CCAGATCTACCGGATTTTTAAACCTGCAG-CTGGCTATCAACCTGGAGGA  49
      |||||||| | |||||||||||||| ||| ||||||||||||||| ||||
seq2  CCAGATCT-CGGGATTTTTAAACCT-CAGACTGGCTATCAACCTGAAGGA  48

seq1  TGG-TTTCTGGTATATACAACAAGAAGTCTCACAGAGATCCTCAACTCTG  98
      ||| |||||||| |    ||||   || ||||||||||||||||||||| 
seq2  TGGTTTTCTGGTTT----AACACAGAGACTCACAGAGATCCTCAACTCT-  93

seq1  GACTCCTGGATAATTTCATGTCCCCTCAAAAGGC-GTAACTAATTGCCTC  147
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  GACTCCTGGATAATTTCATGTCCCCTCAAAAGGCGGTAACTAA-TGCCTC  142

seq1  CGCTAGGGCTTTGCAGCTGGAAGCAAGCGTGGAACATCTGTAGATTCGGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAGGGCTTTGCAGCTGGAAGCAAGCGTGGAACATCTGTAGATTCGGT  192

seq1  CTGTATTTTACCTATGACCCACATCCCCACAGCCATCTGGAGACAGAGGG  247
      ||| | ||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTG-AATTTACCTATGACCCACATCCCCACAGCCATCTGAAGACAGAGGG  241

seq1  CCTAGTCATTGTACTACCCATTGTATCCCAAATAAACATGTAGGCCTGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTAGTCATTGTACTACCCATTGTATCCCAAATAAACATGTAGGCTTGAG  291

seq1  ATCCTGTCTGGCCTTTACCGATGCAAAGCGCACTAGCATCTCTCCGGGAA  347
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCCTGTCTGGCCTTTACCGATGCAAAGCGCACTAGCATCTCTCCGGG-A  340

seq1  CTACCAACAACCAAGCAGATTAGCAGGCTAAGCAGCCCCTCAGCTTCCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAACAACCAAGCAGATTAGCAGGCTAAGCAGCCCCTCAGCTTCCAT  390

seq1  TCCCCGAGGGCCTTCAGTTCCTGGATACACTCTCCCACATCCTGAGTACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGAGGGCCTTCAGTTCCTGGATACACTCTCCCACATCCTGAGTACA  440

seq1  CCCTCGGATACCTAAAAAGCTGAGATGGGGCTTTGCCACTCCTGGGGAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGGATACCTAAAAAGCTGAGATGGGGCTTTGCCACTCCTGGGGAGT  490

seq1  GGGGTACAAAATCCTGAAAACAAGCGGCTCTCCCTGGATCCCTTAACAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACAAAATCCTGAAAACAAGCGGCTCTCCCTGGATCCCTTAACAAT  540

seq1  TTTCATAAAGACACATTTGCGATCTGACAGCCACCAAATTCTAAATTCGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAAAGACACATTTGCGATCTGACAGCCACCAAATTCTAAATTCGT  590

seq1  TTCACAGGCACACAGGTTCCTTAGACTTTAAGCCACAGAATGTGGGGCCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGCACACAGGTTCCTTAGACTTTAAGCCACAGAATGTGGGGCCA  640

seq1  GTCCTAGGGGGTGGGGTTCACACCCCTTCCCTTCCTACAGCCTGACCAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGGGGGTGGGGTTCACACCCCTTCCCTTCCTACAGCCTGACCAAG  690

seq1  GCAGTAGACCTCTGCCAGCGGGATACTAGCAAACAGATTTCCCTCATGGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGACCTCTGCCAGCGGGATACTAGCAAACAGATTTCCCTCATGGT  740

seq1  GTCCCCAACCAAGAGCAAGAGACTCAAGCATGAAGTTATTCCCATAGACC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCAACCAAGAGCAAGAGACTCAAGCATGAAGTTATTCCCATAGACC  790

seq1  AGGTAGACAGAGAAATTCCCTAGTAAAAGAGCAAAGGCCTTATCAGGAAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGACAGAGAAATTCCCTAGTAAAAGAGCAAAGGCCTTATCAGGAAC  840

seq1  CACTACTCTCATGGAATATATTATTCATTTTGGGCTTCCCCATCTCTTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTCTCATGGAATATATTATTCATTTTGGGCTTCCCCATCTCTTCA  890

seq1  GTCTGCTAATGACCCGGCTTTTATTTCCAATATCACTCAGATCAAGTGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTAATGACCCGGCTTTTATTTCCAATATCACTCAGATCAAGTGAA  940

seq1  GCTCTCAAAATAAAACATCTCTGGGTTGCTTGGTACCCTAATCTGGAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAAAATAAAACATCTCTGGGTTGCTTGGTACCCTAATCTGGAAAG  990

seq1  AGTTTTATGGGTTCTTTTAGTTTTTGTTACTGTATTTTATTTTATTTTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATGGGTTCTTTTAGTTTTTGTTACTGTATTTTATTTTATTTTAT  1040

seq1  TTTGAGACAGGGTTTTGCTATGTAGCCCTGGCTATCCTGGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAGGGTTTTGCTATGTAGCCCTGGCTATCCTGGAATTC  1085