BAC Information

Click to search

BAC

Clone NameB6Ng01-079G07
Chromosome11 (Build37)2 (Build37)
Map Location 20,043,597 - 20,044,543144,161,743 - 144,162,043
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2, Actr2
Downstream geneRab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035, Peli1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079G07.bB6Ng01-079G07.g
ACCDH894814DH894815
length945862
definitionDH894814|Mus musculus domesticus DNA, BAC clone: B6Ng01-079G07, 5' end.DH894815|Mus musculus domesticus DNA, BAC clone: B6Ng01-079G07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,043,597 - 20,044,543)(144,161,743 - 144,162,043)
sequence
gaattcagcaagttgagtaagaatgatctgagttttgttttgtttcttaa
gaatgatctgagttttgtttggcttctttgttttgttttggtttttttga
gacagggtttctctgtatagccctggctgtcctggaacttactctgtaga
ccagactggcctcgaactcagaaatctgcctgtctctgcctcccgagtgc
tgggattaaaggtgtgtgccactgtgcctggcttattttttaagattttg
tttactttatgtatgtgagtacactgccgctgtcctcaagtacaccagaa
gagggcatcagatcccattacagatggttgagagccaccatgtggtttct
gggaattgaactcagaacctctggaagagcaatcagtgctcttaactgta
gagcagtctctccaccccctgagttttgtttttttgtttattaagattca
atctttttctgtagccctggctgggtttgacctttaattcgctcagtatt
ttattatgtatttatttacttacttatttatttgcttgttcatttactca
atttatttttttatcctttttttttttttttttttttttttttttttggc
ttttaaagacagggtttctctgtatagtcctgactgtcctgaaattcact
ctgaagaccaggctgggctcaaactcactgactttcacctgcctctccct
cctatgtgctgggactaaatgcttgtgccagcatgtccagcctatactgt
gctcttttgagtgtctctatagtttgattaaaaactcacttaaaaatgct
cctatcccagtgtatgcctagcaatcacttttcttttctctcatttttta
aaaggataattttattttttcccatttttttatgaataattatttttatg
tggcatgagaggtttactgggggtgtctttagggaatgtgtgtgc
gaattcaccctggtgtggatgccaggcctcattcctttgctggaagcaaa
atcagcattcccaagtattcaccgtagactagggacactctctcttcttc
acttgcttgccttgtaggactaagcaactgctagaacctgctagtctaca
atgaagacttgggaccaattgctctttagaaacttcatgggctttgtctg
ggactacagaggtcttgtggactaagtgactaccggttgtcaaaccccat
cctctccccaatgagcgacaggtattctgggactactcaagaggcataaa
cctcaaggactgagtactggtttttcagcatcccaggtatgattcgttac
tattttaaagccttaataaattcatatatgttccgggtggtggtggcgca
tgcctttaatcccagcacttgggaggcagaagcaggaggatttctgagtt
tgaggccagcttggtctacagagtgagttccaggacagccagggctatac
agagaaatcctgtctttgaaaaaccaaaaaaaaaaaaaatcatatatatt
ttatatatatatatatatatatatatatatatacacacatatagacaagc
atacacacacataatacacacacatatgaatatatattcatccccttgat
tctgtccctctagagaacctgactaaaataagttggtaccaaaaatgatt
ctggagaaacagaattttaaggatgagttttctcaagcaggcttagtggt
acttggaactggatcttcagctggatacatagaaatattatcatggaaga
ctcctcatattaggagcactgaaaattcatggtgtgcactattaaagaac
ttgtctagataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_20043597_20044543
seq2: B6Ng01-079G07.b_49_993

seq1  GAATTCAGCAAGTTGAGTAAGAATGATCTGAGTTTTGTTTTGTTTCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAAGTTGAGTAAGAATGATCTGAGTTTTGTTTTGTTTCTTAA  50

seq1  GAATGATCTGAGTTTTGTTTGGCTTCTTTGTTTTGTTTTGGTTTTTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATCTGAGTTTTGTTTGGCTTCTTTGTTTTGTTTTGGTTTTTTTGA  100

seq1  GACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTTACTCTGTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTTACTCTGTAGA  150

seq1  CCAGACTGGCCTCGAACTCAGAAATCTGCCTGTCTCTGCCTCCCGAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTGGCCTCGAACTCAGAAATCTGCCTGTCTCTGCCTCCCGAGTGC  200

seq1  TGGGATTAAAGGTGTGTGCCACTGTGCCTGGCTTATTTTTTAAGATTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGTGTGTGCCACTGTGCCTGGCTTATTTTTTAAGATTTTG  250

seq1  TTTACTTTATGTATGTGAGTACACTGCCGCTGTCCTCAAGTACACCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTATGTATGTGAGTACACTGCCGCTGTCCTCAAGTACACCAGAA  300

seq1  GAGGGCATCAGATCCCATTACAGATGGTTGAGAGCCACCATGTGGTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCATCAGATCCCATTACAGATGGTTGAGAGCCACCATGTGGTTTCT  350

seq1  GGGAATTGAACTCAGAACCTCTGGAAGAGCAATCAGTGCTCTTAACTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTGAACTCAGAACCTCTGGAAGAGCAATCAGTGCTCTTAACTGTA  400

seq1  GAGCAGTCTCTCCACCCCCTGAGTTTTGTTTTTTTGTTTATTAAGATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCTCTCCACCCCCTGAGTTTTGTTTTTTTGTTTATTAAGATTCA  450

seq1  ATCTTTTTCTGTAGCCCTGGCTGGGTTTGACCTTTAATTCGCTCAGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTCTGTAGCCCTGGCTGGGTTTGACCTTTAATTCGCTCAGTATT  500

seq1  TTATTATGTATTTATTTACTTACTTATTTATTTGCTTGTTCATTTACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGTATTTATTTACTTACTTATTTATTTGCTTGTTCATTTACTCA  550

seq1  ATTTATTTTTTTATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTTTATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGC  600

seq1  TTTTAGAGACAGGGTTTCTCTGTATAGTCCTGACTGTCCTGAAATTCACT  650
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGACAGGGTTTCTCTGTATAGTCCTGACTGTCCTGAAATTCACT  650

seq1  CTGAAGACCAGGCTGGCCTCAAACTCACTGACTTTCACCTGCCTCTCCCT  700
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGAAGACCAGGCTGGGCTCAAACTCACTGACTTTCACCTGCCTCTCCCT  700

seq1  CCTATGTGCTGGGACTAAATGCTTGTGCCAGCATGTCCAGCCTATACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTGCTGGGACTAAATGCTTGTGCCAGCATGTCCAGCCTATACTGT  750

seq1  GCTCTTTTGAGTGTCTCTATAGTTTGATTAAAAACTCACTTAAAAATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTTGAGTGTCTCTATAGTTTGATTAAAAACTCACTTAAAAATGCT  800

seq1  CCTATCACCAGTGTATGCCTAGCATTCACTTTTCTTTTCTCTCATTTTTT  850
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTATC-CCAGTGTATGCCTAGCAATCACTTTTCTTTTCTCTCATTTTTT  849

seq1  AAAAGATTTATTTTATTTTTTCCCATTTTTTAATGATTTATTTATTTTTA  900
      |||||  | |||||||||||||||||||||| ||||  || |||||||||
seq2  AAAAGGATAATTTTATTTTTTCCCATTTTTTTATGA-ATAATTATTTTTA  898

seq1  TGTGCATTGAGTGTTTTACTTGTGTGTGTCTTT-GGGAATGTGTGTGC  947
      ||||   |||| | ||||| || | |||||||| ||||||||||||||
seq2  TGTGGCATGAGAGGTTTAC-TGGGGGTGTCTTTAGGGAATGTGTGTGC  945

seq1: chr2_144161743_144162043
seq2: B6Ng01-079G07.g_467_691 (reverse)

seq1  TGTGTGTGTATATACATATACATATGTGTGTATATGTGTGTGTGTATATA  50
                                          |||||||||||   
seq2  ------------------------------------TGTGTGTGTAT---  11

seq1  TACATATGTGTGTATGTATATATATGTATGTGTATATGTATGTGTGTGTA  100
          ||||||||        | ||||  ||| ||||      ||||||||
seq2  ----TATGTGTG--------TGTATGCTTGTCTATA------TGTGTGTA  43

seq1  TATACACATGTAGGTATATATGTATATATGTGTGTGTATATACATATACA  150
      ||||          ||||||| ||||||        |||||| ||||| |
seq2  TATA----------TATATATATATATA--------TATATATATATA-A  74

seq1  TATACACACACTTTTTTTTTCCTTTTGGTTTTTC-GAGATAGGGTTTCTC  199
       ||| | |   |||||||||  ||||||||||||  ||| ||| ||||||
seq2  AATATATATGATTTTTTTTT-TTTTTGGTTTTTCAAAGACAGGATTTCTC  123

seq1  TGTGTAGCCCTGGCTGTCCTGGAGCTCACTCTGTAGACCAGGCTGGCCTC  249
      ||| ||||||||||||||||||| |||||||||||||||| |||||||||
seq2  TGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAAGCTGGCCTC  173

seq1  GAACTCAGAAACCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGC  299
       |||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  AAACTCAGAAATCCTCCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGC  223

seq1  AT  301
      ||
seq2  AT  225