BAC Information

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BAC

Clone NameB6Ng01-079H12
Chromosome11 (Build37)
Map Location 27,686,120 - 27,868,889
singlet/doubletdoublet
Overlap genenone
Upstream geneOTTMUSG00000005300, LOC666270, LOC100042367, LOC100042377
Downstream geneEG626571, Ccdc85a, Efemp1, LOC382504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079H12.bB6Ng01-079H12.g
ACCDH894870DH894871
length1,180988
definitionDH894870|Mus musculus domesticus DNA, BAC clone: B6Ng01-079H12, 5' end.DH894871|Mus musculus domesticus DNA, BAC clone: B6Ng01-079H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,867,711 - 27,868,889)(27,686,120 - 27,686,981)
sequence
gaattcattcaacttaacatttattgattaattgattaacatttattgtc
taatatttcggaaagccagggaaggaacatgtcagcaggaactgaaaccg
agacagtgctacttgctacctttctttgcatgacttgtttaactcgtgtt
cttatacaacccaggaccacctgcacaaaagacacctcacacagtaaact
gagccatctcaaattaatcattaatcaagaaaatatcctacagacatgtc
cagaggccaatctaatggaggcaattccttaactgaaattcctgattctc
agatgtgtgaagttgacagccatgatgaatcactatagaaaccaccaatg
acttcattgccatgaagttaagcacaagatctttaatccagatagccttc
atgaaaacatccctcccttctctttccagcctcagctttactatttccta
ttgatagctttactatttattactatttactgtgcatctctcctcctcac
tccagtattaagacccctactacattctgattttgcagtatacacaccat
tcttttctaatatttagtcttccattttcattttatttgaatttccaaac
ttgataaaaatttgttttacattagtacacacagaacataattttgttca
tagtaagttactgagccatagaatgatttgtcgacttgtgtctgctgaga
actcattacatcgtgtcattttagaattacttgaatatttcatctcatga
aaaaaaatctcccaatgaaaactagatctattttctagtctttcaaaagg
acatagaatacaaactatgctttcttagtttcagacttatgtttagaatg
cattttcttacattattaaatgtacatctttaaatgcatagatggtaggt
tactttctttttcttttttgttttgaaatacttaagtacattcctctgga
accagaaattttgaagtcactcttaattttgtaagtgaaattctaattaa
ctttatattatattttgtcttccagcctatatcttaaataaggactgtta
aatcaggacttaacatttgacaactttattcagacaaggatactggaatt
tattcctgaattactattcagtgcctacccatcctttcctatctaggtca
ttctgaaatcatgaactttcactccttcta
gaattccaggtactaaagaagagattggggaaaatgtttaccttgttcaa
agaaggtgttaaaccaaaaaagttgttcacagcattggttacatatcagc
acaaatggcaccccagtccatacctctgcctgccccctaagagtcaggct
ctaacctgatacactcaggtgatacacccccacctaactgcctcaatctt
cttgacttcagggaccccagcaagcccaaccagttggagttccatctccc
ttccacctgcactagactttatattatggagtagggcacatgatgccaca
aaccacagctctacctgctttccaagaggtcagctctcaattgacacaca
caggaggcctggtaggccatccaacactagagaaaactagatggcaaaag
ggaagcccaagaatacaatcaacagaagccaatacaatatggcataacca
gaacccagctctcctactacagcaagacctggatagcctaacccacctat
agagaagactgtatcattgaagcctctatcagcaagatcatagaggcctt
taaagaggatataaagagttcccttaaagagatacagggaaacataatct
aacaggaaaaaaaaaaacccttataaaggaaacataagtccctttgaaaa
atacaagaaaatacaatcaaacaggcaaaggaaaaaaatgaaacagtcct
agtcctaaaaatggaaatagaagcattaaagaaaacatagctggaggcaa
ctctttcaggtggaaaacctagaaagtataatagtaattatagatacaag
aatcatcaacagagtgcaagagatgtaagagagaatttcagatatagaag
ataagacagaagaaatggagacattgatcaagaaaattgtcaattgtaaa
agtcccctaattaaaaacatccaggaaaattggaatagtataaaaagacc
aacctagaataaaagaaatagaggagaagatactagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_27867711_27868889
seq2: B6Ng01-079H12.b_35_1214 (reverse)

seq1  TAGAA-GAGTGAAAG-TCATGATTTCAGAATGACCTAGATAGGAAAGGAC  48
      ||||| ||||||||| ||||||||||||||||||||||||||||||||| 
seq2  TAGAAGGAGTGAAAGTTCATGATTTCAGAATGACCTAGATAGGAAAGGA-  49

seq1  TGGGTA-GCACTGAATAGTAATTCCAGGAATAAAATTCAGTATCC-TGTC  96
      |||||| |||||||||||||||| |||||||||| | |||||||| ||||
seq2  TGGGTAGGCACTGAATAGTAATT-CAGGAATAAATTCCAGTATCCTTGTC  98

seq1  TGAATATAGTTGTCAAATGTTAAGTCCTGATTTAACAGTCCTTATTT-AG  145
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  TGAATAAAGTTGTCAAATGTTAAGTCCTGATTTAACAGTCCTTATTTAAG  148

seq1  ATATAGGCTGGAAGACAAAATATAATATAAAGTTAATTAAGAATTTCACT  195
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATATAGGCTGGAAGACAAAATATAATATAAAGTTAATT-AGAATTTCACT  197

seq1  TACAAAATTAAGAGTGACTTCAAAATTTCTGGTTCCAGAGGAATGTACTT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATTAAGAGTGACTTCAAAATTTCTGGTTCCAGAGGAATGTACTT  247

seq1  AAGTATTTTCAAAACAAAAAAGAAAAAGAAAGTAACCTACCATCTATGCA  295
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTA-TTTCAAAACAAAAAAGAAAAAGAAAGTAACCTACCATCTATGCA  296

seq1  TTTAAAGATGTACATTTAATAATGTAAGAAAATGCATTCTAAACATAAGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGATGTACATTTAATAATGTAAGAAAATGCATTCTAAACATAAGT  346

seq1  CTGAAACTAAGAAAGCATAGTTTGTATTCTATGTCCTTTTGAAAGACTAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTAAGAAAGCATAGTTTGTATTCTATGTCCTTTTGAAAGACTAG  396

seq1  AAAATAGATCTAGTTTTCATTGGGAGATTTTTTTTCATGAGATGAAATAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGATCTAGTTTTCATTGGGAGATTTTTTTTCATGAGATGAAATAT  446

seq1  TCAAGTAATTCTAAAATGACACGATGTAATGAGTTCTCAGCAGACACAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAATTCTAAAATGACACGATGTAATGAGTTCTCAGCAGACACAAG  496

seq1  TCGACAAATCATTCTATGGCTCAGTAACTTACTATGAACAAAATTATGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACAAATCATTCTATGGCTCAGTAACTTACTATGAACAAAATTATGTT  546

seq1  CTGTGTGTACTAATGTAAAACAAATTTTTATCAAGTTTGGAAATTCAAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTACTAATGTAAAACAAATTTTTATCAAGTTTGGAAATTCAAAT  596

seq1  AAAATGAAAATGGAAGACTAAATATTAGAAAAGAATGGTGTGTATACTGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAATGGAAGACTAAATATTAGAAAAGAATGGTGTGTATACTGC  646

seq1  AAAATCAGAATGTAGTAGGGGTCTTAATACTGGAGTGAGGAGGAGAGATG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGAATGTAGTAGGGGTCTTAATACTGGAGTGAGGAGGAGAGATG  696

seq1  CACAGTAAATAGTAATAAATAGTAAAGCTATCAATAGGAAATAGTAAAGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAAATAGTAATAAATAGTAAAGCTATCAATAGGAAATAGTAAAGC  746

seq1  TGAGGCTGGAAAGAGAAGGGAGGGATGTTTTCATGAAGGCTATCTGGATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGGAAAGAGAAGGGAGGGATGTTTTCATGAAGGCTATCTGGATT  796

seq1  AAAGATCTTGTGCTTAACTTCATGGCAATGAAGTCATTGGTGGTTTCTAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCTTGTGCTTAACTTCATGGCAATGAAGTCATTGGTGGTTTCTAT  846

seq1  AGTGATTCATCATGGCTGTCAACTTCACACATCTGAGAATCAGGAATTTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTCATCATGGCTGTCAACTTCACACATCTGAGAATCAGGAATTTC  896

seq1  AGTTAAGGAATTGCCTCCATTAGATTGGCCTCTGGACATGTCTGTAGGAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGGAATTGCCTCCATTAGATTGGCCTCTGGACATGTCTGTAGGAT  946

seq1  ATTTTCTTGATTAATGATTAATTTGAGATGGCTCAGTTTACTGTGTGAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTGATTAATGATTAATTTGAGATGGCTCAGTTTACTGTGTGAGG  996

seq1  TGTCTTTTGTGCAGGTGGTCCTGGGTTGTATAAGAACACGAGTTAAACAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTGTGCAGGTGGTCCTGGGTTGTATAAGAACACGAGTTAAACAA  1046

seq1  GTCATGCAAAGAAAGGTAGCAAGTAGCACTGTCTCGGTTTCAGTTCCTGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGCAAAGAAAGGTAGCAAGTAGCACTGTCTCGGTTTCAGTTCCTGC  1096

seq1  TGACATGTTCCTTCCCTGGCTTTCCGAAATATTAGACAATAAATGTTAAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTTCCTTCCCTGGCTTTCCGAAATATTAGACAATAAATGTTAAT  1146

seq1  CAATTAATCAATAAATGTTAAGTTGAATGAATTC  1179
      ||||||||||||||||||||||||||||||||||
seq2  CAATTAATCAATAAATGTTAAGTTGAATGAATTC  1180

seq1: chr11_27686120_27686981
seq2: B6Ng01-079H12.g_71_932

seq1  GAATTCCAGGTACTAAAGAAGAGATTGGGGAAAATGTTTACCTTGTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTACTAAAGAAGAGATTGGGGAAAATGTTTACCTTGTTCAA  50

seq1  AGAAGGTGTTAAACCAAAAAAGTTGTTCACAGCATTGGTTACATATCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGTTAAACCAAAAAAGTTGTTCACAGCATTGGTTACATATCAGC  100

seq1  ACAAATGGCACCCCAGTCCATACCTCTGCCTGCCCCCTAAGAGTCAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGCACCCCAGTCCATACCTCTGCCTGCCCCCTAAGAGTCAGGCT  150

seq1  CTAACCTGATACACTCAGGTGATACACCCCCACCTAACTGCCTCAATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTGATACACTCAGGTGATACACCCCCACCTAACTGCCTCAATCTT  200

seq1  CTTGACTTCAGGGACCCCAGCAAGCCCAACCAGTTGGAGTTCCATCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTTCAGGGACCCCAGCAAGCCCAACCAGTTGGAGTTCCATCTCCC  250

seq1  TTCCACCTGCACTAGACTTTATATTATGGAGTAGGGCACATGATGCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTGCACTAGACTTTATATTATGGAGTAGGGCACATGATGCCACA  300

seq1  AACCACAGCTCTACCTGCTTTCCAAGAGGTCAGCTCTCAATTGACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGCTCTACCTGCTTTCCAAGAGGTCAGCTCTCAATTGACACACA  350

seq1  CAGGAGGCCTGGTAGGCCATCCAACACTAGAGAAAACTAGATGGCAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCCTGGTAGGCCATCCAACACTAGAGAAAACTAGATGGCAAAAG  400

seq1  GGAAGCCCAAGAATACAATCAACAGAAGCCAATACAATATGGCATAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCCAAGAATACAATCAACAGAAGCCAATACAATATGGCATAACCA  450

seq1  GAACCCAGCTCTCCTACTACAGCAAGACCTGGATAGCCTAACCCACCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAGCTCTCCTACTACAGCAAGACCTGGATAGCCTAACCCACCTAT  500

seq1  AGAGAAGACTGTATCATTGAAGCCTCTATCAGCAAGATCATAGAGGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGACTGTATCATTGAAGCCTCTATCAGCAAGATCATAGAGGCCTT  550

seq1  TAAAGAGGATATAAAGAGTTCCCTTAAAGAGATACAGGGAAACATAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGGATATAAAGAGTTCCCTTAAAGAGATACAGGGAAACATAATCT  600

seq1  AACAGGAAAAAAAAAAACCCTTATAAAGGAAACATAAGTCCCTTTGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAAAAAAAAAAACCCTTATAAAGGAAACATAAGTCCCTTTGAAAA  650

seq1  ATACAAGAAAATACAATCAAACAGGCAAAGGAAAAAAATGAAACAGTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGAAAATACAATCAAACAGGCAAAGGAAAAAAATGAAACAGTCCT  700

seq1  AGTCCTAAAAATGGAAATAGAAGCATTAAAGAAAACATAGCTGGAGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAAAAATGGAAATAGAAGCATTAAAGAAAACATAGCTGGAGGCAA  750

seq1  CTCTTTCAGGTGGAAAACCTAGAAAGTATAATAGTAATTATAGATACAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCAGGTGGAAAACCTAGAAAGTATAATAGTAATTATAGATACAAG  800

seq1  AATCATCAACAGAGTGCAAGAGATGTAAGAGAGAATTTCAGATATAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCAACAGAGTGCAAGAGATGTAAGAGAGAATTTCAGATATAGAAG  850

seq1  ATAAGACAGAAG  862
      ||||||||||||
seq2  ATAAGACAGAAG  862