BAC Information

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BAC

Clone NameB6Ng01-079J21
Chromosome11 (Build37)
Map Location 36,648,590 - 36,649,783
singlet/doubletsinglet
Overlap geneOdz2
Upstream geneWwc1, LOC636532
Downstream geneLOC100039148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079J21.bB6Ng01-079J21.g
ACCDH894974DH894975
length1,2141,166
definitionDH894974|Mus musculus domesticus DNA, BAC clone: B6Ng01-079J21, 5' end.DH894975|Mus musculus domesticus DNA, BAC clone: B6Ng01-079J21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctagttccaaataaaatcaagcagaggacccagaaaacttccaa
gaaatgagctctattcctcccccaactggaaaagttacacaaaagaatag
gttgggctagccattaaacctaccaccccaaattgatgtcaaatactttg
tgaaaataaatagatggagaaagagattaagtgatcttgaaagttgtata
tgtggatttatttgtgtattcaatatatatgtatgcgttcatatatatat
atgtgtgtgtacctatatatatataaagaaggatttattaatttctgggg
ttattaaataatctataaactaagtgtctctagattctcttatttactta
ttataaaaatatagtcatatatttactattatctattactgatgatagat
agatgatggatatatagttatagataggtggattattggataaataaatg
gataaaataagtcccaagcttattttgctcacagtttttaaatatggtta
ttttgcttacagttttatgtatggtaggagagctcttttatgagaatgat
aatgtatagaaacaatctgtattcttgctcattcttcattcgtgggtcgg
tggaactccctcagactggatgatcaccacttaaccaacacacagactga
tcactgacttggtggtagatcgagcatatagctgtgagcttttgctcctc
aaaagatgagacatgccgactagcctgtctaggtcgtgagtcaaagctca
gtggagtcgaggcaccacacagactacactgtgaacgcacaaagtaagag
ctggagctaggccgccctgccccgcgctgatagacacactcagtgatcac
ccatctctgttgctactctagtgactgtagaggacttttacagtgcaatt
aaaatcctgtcacagatgtcctgtccccccgccatataaataagagaatg
actcggtagatctagaagttattatagcatctgctatacgcagaaatttg
cagatgtgaattgaagacaactaagtgggaagaaaacctggcaacaggaa
cattcctagtgatggtgactcttactctaatctaacctcactgcatcctg
aagaaggctgcctctgcatgctgacaggtggagctttctcatatcaagaa
aagacgtgataacactgggaaactgtttcaacccctcttcttctaattct
tcagagggttgtga
gaattcaccattcagattgaaaaagaaacattaaatatatttaagcgaat
ggcctctgatttaccagcgatcatccccaaagagttcacagtgtgtttga
agatcagataaactgacagcctccctggtgtacacaaagcaggtctaaaa
ttattccagaaagtattcctgggaggaaggcagtttgcctgccattctta
cttatgtaagctagagattgaccatgagactggcagaaatatatttttga
gctctactttttaattacatactttagggagtccattttaaactttcata
tatgtaaggtacatttcagaacacatatctagtattgcaatggatgttca
acataatattcagcaagaagcttcctgtattcatgatgcaatggagaccc
agccaataaactcaatccagaaagtgatacagaaaaaataaagctcaaag
ttagatgggtatttttgaataaatatatatatataattgttttcctttga
gaaatttcataatagtgcaaattctttgagaaagaacatgagttttctgt
ttatatgtaggcacagtccaaactgagtttggggttttgcttatctgggt
gatatagaacaggttccttaaatactagaaggttaggacaatatgataaa
taaaataagccaaactacagtaaatttatatgaaaaaaatctcaacagtt
aacttattcttgcataagtaaactctatcaccttacttgggcacattcat
tcattaactgaaggagatggaccatcattcccagagctcaagagcatgat
caaaattatgagatttcaaaatgcagtatttgctaacccactgtgaccta
gtatacgtgcatgtcataatcagaagtaacagcaccagctttaaaatatt
acaccagtcccaggagatttgaagaatctaagttatacatgttctagaaa
acattagtagacactatatcatagtgtcatcattatgaaagctctgccag
ttcatcgagagaatcttcgtgcagaacacatgtgagatcatctggaagta
gagtccaccttcagttggcagaagatcgttagctacttacgctccgacat
gcatgcaacccttcaatgttatgactgactacatgcaagtattgagccga
atcgcggtatgcatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_36648590_36649783
seq2: B6Ng01-079J21.g_69_1234 (reverse)

seq1  GCATGCATACACGCACGTGCGCGCACACATACTTTGAGTAGTAGTTCAGT  50
      |||||||||| |||   |  || ||   ||||||  |   |||| |||||
seq2  GCATGCATAC-CGCGATTCGGCTCA---ATACTTGCA--TGTAG-TCAGT  43

seq1  CATAACATAGGAAGGATGACAATGATATTATGAAGATGTAGGTATGATAA  100
      |||||||| | | || ||   |||  ||   | ||  ||| ||| | |||
seq2  CATAACATTGAAGGGTTG--CATG-CATGTCGGAG-CGTAAGTA-GCTAA  88

seq1  ACAGATCATCTGGCAACTGAAAGGTGGAACTCTTACTTCCCGATGACCTC  150
         |||| |||| |||||| ||||||| |||| ||||||| ||||| |||
seq2  --CGATCTTCTGCCAACTG-AAGGTGG-ACTC-TACTTCCAGATGATCTC  133

seq1  ACATGTGTTCTGGGCACGGAGGATTCTTCTTGATGGAATTGCCAGAGCTT  200
      |||||||||||  |||| || ||||| ||| ||| ||| || ||||||||
seq2  ACATGTGTTCT--GCAC-GAAGATTC-TCTCGAT-GAACTGGCAGAGCTT  178

seq1  TCATAATGATTGACACTCTGATATAGTGTTCTACTAATGTTTTCTAGAAC  250
      ||||||||| ||||||| |||||||||| |||||||||||||||||||||
seq2  TCATAATGA-TGACACTATGATATAGTG-TCTACTAATGTTTTCTAGAAC  226

seq1  ATTGTATAACTTAGATTTCTTCAAATCTCCTGGGGCCTGGTGGTAATATT  300
      | ||||||||||||| ||||||||||||||| ||| ||||| ||||||||
seq2  A-TGTATAACTTAGA-TTCTTCAAATCTCCT-GGGACTGGT-GTAATATT  272

seq1  TTTAAGCTGGTGCTGTTACTTCTGATTATTACATGCACGTATACTAGGTC  350
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTAAAGCTGGTGCTGTTACTTCTGATTATGACATGCACGTATACTAGGTC  322

seq1  ACAGTGGGTTAGCAAATACTGCATTTTGAAATCTCATAATTTTGATCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGGTTAGCAAATACTGCATTTTGAAATCTCATAATTTTGATCATG  372

seq1  CTCTTGAGCTCTGGGAATGATGGTCCATCTCCTTCAGTTAATGAATGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAGCTCTGGGAATGATGGTCCATCTCCTTCAGTTAATGAATGAAT  422

seq1  GTGCCCAAGTAAGGTGATAGAGTTTACTTATGCAAGAATAAGTTAACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCAAGTAAGGTGATAGAGTTTACTTATGCAAGAATAAGTTAACTGT  472

seq1  TGAGATTTTTTTCATATAAATTTACTGTAGTTTGGCTTATTTTATTTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTTTTTCATATAAATTTACTGTAGTTTGGCTTATTTTATTTATC  522

seq1  ATATTGTCCTAACCTTCTAGTATTTAAGGAACCTGTTCTATATCACCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTCCTAACCTTCTAGTATTTAAGGAACCTGTTCTATATCACCCAG  572

seq1  ATAAGCAAAACCCCAAACTCAGTTTGGACTGTGCCTACATATAAACAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAAAACCCCAAACTCAGTTTGGACTGTGCCTACATATAAACAGAA  622

seq1  AACTCATGTTCTTTCTCAAAGAATTTGCACTATTATGAAATTTCTCAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATGTTCTTTCTCAAAGAATTTGCACTATTATGAAATTTCTCAAAG  672

seq1  GAAAACAATTATATATATATATTTATTCAAAAATACCCATCTAACTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAATTATATATATATATTTATTCAAAAATACCCATCTAACTTTGA  722

seq1  GCTTTATTTTTTCTGTATCACTTTCTGGATTGAGTTTATTGGCTGGGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTTTTTCTGTATCACTTTCTGGATTGAGTTTATTGGCTGGGTCT  772

seq1  CCATTGCATCATGAATACAGGAAGCTTCTTGCTGAATATTATGTTGAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCATCATGAATACAGGAAGCTTCTTGCTGAATATTATGTTGAACA  822

seq1  TCCATTGCAATACTAGATATGTGTTCTGAAATGTACCTTACATATATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGCAATACTAGATATGTGTTCTGAAATGTACCTTACATATATGAA  872

seq1  AGTTTAAAATGGACTCCCTAAAGTATGTAATTAAAAAGTAGAGCTCAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAAATGGACTCCCTAAAGTATGTAATTAAAAAGTAGAGCTCAAAA  922

seq1  ATATATTTCTGCCAGTCTCATGGTCAATCTCTAGCTTACATAAGTAAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTCTGCCAGTCTCATGGTCAATCTCTAGCTTACATAAGTAAGAA  972

seq1  TGGCAGGCAAACTGCCTTCCTCCCAGGAATACTTTCTGGAATAATTTTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGCAAACTGCCTTCCTCCCAGGAATACTTTCTGGAATAATTTTAG  1022

seq1  ACCTGCTTTGTGTACACCAGGGAGGCTGTCAGTTTATCTGATCTTCAAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTTGTGTACACCAGGGAGGCTGTCAGTTTATCTGATCTTCAAAC  1072

seq1  ACACTGTGAACTCTTTGGGGATGATCGCTGGTAAATCAGAGGCCATTCGC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGAACTCTTTGGGGATGATCGCTGGTAAATCAGAGGCCATTCGC  1122

seq1  TTAAATATATTTAATGTTTCTTTTTCAATCTGAATGCTGAATTC  1194
      |||||||||||||||||||||||||||||||||||| |||||||
seq2  TTAAATATATTTAATGTTTCTTTTTCAATCTGAATGGTGAATTC  1166