BAC Information

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BAC

Clone NameB6Ng01-080A12
Chromosome11 (Build37)
Map Location 26,689,519 - 26,690,679
singlet/doubletsinglet
Overlap genenone
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300
Downstream geneLOC666270, LOC100042367, LOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080A12.bB6Ng01-080A12.g
ACCDH895280DH895281
length1,1261,162
definitionDH895280|Mus musculus domesticus DNA, BAC clone: B6Ng01-080A12, 5' end.DH895281|Mus musculus domesticus DNA, BAC clone: B6Ng01-080A12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataatgtatgctatattttgatctccaggcgttagaattgtcat
aatttccctttgtggttggttccttttgattatagaaaaaatactaattt
atatttcatcatgtaaaagcaaactccaaactcaaatttttcagctcact
gaatggaattttgaaattaaaattaaatggtttataaaacccctgtctct
taggacagctgaagtgagtgaaggctcttttgaactcaattggtaatgta
atgatagaacaaattaaagctgtacttgataaacataatattttggtaaa
gattaagtgatgtttttggaatacaagtcaactcaagtaaaaccaaatct
cacataataataataaagcaaaattgactatagacaaggctcactttcaa
tattgttattctatacctcctgattattttttcacacctggcactccaaa
agaagaatgtgtagaaatgcctgttgagtctttagtacatagcttctttg
tatcactctaattagaagggtcaagaactaggaaagtcgctcggctccca
gcatccctcccatttgaactcagtatcaaagcgaaacaaacagatgagca
ggagtgagtggacttcaatcacagattttttttaccccgttgactgtatt
cagctttctcttcaccccagaatgttgttatgatccccaaaaggttcaga
tttttactttttagctaaaccatcatggatattctgcctaaatttcataa
atagcaagatttcgcacgtcttcaaaaaaatactgagatactttcctggg
actcttgatagaaaatgattgttgtgaactcatttaatgcctatgccttc
cacagtggaacacaagagttattgaggtagctaaaacaaagcaagatata
tggtagaaagaaagaaaaaatgtttccccaggtctgtatgcagcagctca
gaatccatgaagagatgaatgactgaatttgtattttcagtgttaaatgc
tgagtatactttttgcatgctacagcatgtgcacacacaaagcatcctga
aataaacatcaagacccttcagctcattgtagcacttactatataatcat
gtggctgatgtgctttatgtttctct
gaattctcacctgaggaatagtgaatggtagataagcacctgaaaaaatg
ttccccgtccttaatcctcgcggaaatgcaaatcataacaaccctgagat
tccacctcacaccagtcagaatgtctaagttcaaaaattcaggtgacagc
aaatgctggcgaggatgtggagaaagttgaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgggtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggacacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaaatgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactaccaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactctgccggagcctagcaaac
acagaagtggatgcccacagtcagctaatggatggatcacaggctcccaa
tggagagctagagaaagtacccaggagctaaaggatctgcaccctaatag
ttgaataacattatgaactacacacccggagctctgactctagctgcata
tgtatcaaagattgctagttgccttccctgtaaagaaataccattgaacg
ccaacttatatgcccgaacagggaacgctgcctaaaggggaactggctgg
ttaggggatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26689519_26690679
seq2: B6Ng01-080A12.b_42_1167 (reverse)

seq1  AGAGAAACATAAAACCAACAATTTCAAGCACACATTGATGTATAATAAGG  50
      ||||||||||||| |  |||   |||  ||||   |||| ||| |||  |
seq2  AGAGAAACATAAAGC--ACA---TCAGCCACA---TGAT-TAT-ATA--G  38

seq1  TATAGTGCTACCAGTGGAGCCTGAGGGGTCTTTGATGGTTTTATTTTCAG  100
      || |||||||| |   ||| |||| ||||| ||||||  |||| ||||||
seq2  TA-AGTGCTACAA--TGAG-CTGAAGGGTC-TTGATG--TTTA-TTTCAG  80

seq1  GATGCTTTTGTGTGTTGCACATGCCTTGTAGCATTGCAAAAAGTTATAAC  150
      ||||| |||||||| |||||||||  ||||||| ||||||||| ||| ||
seq2  GATGC-TTTGTGTG-TGCACATGC--TGTAGCA-TGCAAAAAG-TAT-AC  123

seq1  TCAGCATTTAACACCTGAAAATACAAATTCAGTTCATTCATCTCCTTCAT  200
      ||||||||||||| |||||||||||||||||| |||||||||| ||||||
seq2  TCAGCATTTAACA-CTGAAAATACAAATTCAG-TCATTCATCT-CTTCAT  170

seq1  GGATTCTGAGCTGCTGCATACAGACCTGGGGAAAACATTTTTTCTTTCTT  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGATTCTGAGCTGCTGCATACAGACCTGGGG-AAACATTTTTTCTTTCTT  219

seq1  TCTACCATATATCTTGCTTTGTTTTAGCTACCTCAATAACTCTTGTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCATATATCTTGCTTTGTTTTAGCTACCTCAATAACTCTTGTGTTC  269

seq1  CACTGTGGAAGGCATAGGCATTAAATGAGTTCACAACAATCATTTTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGAAGGCATAGGCATTAAATGAGTTCACAACAATCATTTTCTAT  319

seq1  CAAGAGTCCCAGGAAAGTATCTCAGTATTTTTTTGAAGACGTGGGAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAGAGTCCCAGGAAAGTATCTCAGTATTTTTTTGAAGACGTGCGAAATC  369

seq1  TTGCTATTTATGAAATTTAGGCAGAATATCCATGATGGTTTAGCTAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATTTATGAAATTTAGGCAGAATATCCATGATGGTTTAGCTAAAAA  419

seq1  GTAAAAATCTGAACCTTTTGGGGATCATAACAACATTCTGGGGTGAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATCTGAACCTTTTGGGGATCATAACAACATTCTGGGGTGAAGAG  469

seq1  AAAGCTGAATACAGACAACGGGGTAAAAAAAATCTGTGATTGAAGTCCAC  550
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGCTGAATACAGTCAACGGGGTAAAAAAAATCTGTGATTGAAGTCCAC  519

seq1  TCACTCCTGCTCATCTGTTTGTTTTGCTTTGATACTGAGTTCAAATGGGA  600
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCACTCCTGCTCATCTGTTTGTTTCGCTTTGATACTGAGTTCAAATGGGA  569

seq1  GGGATGCTGGGAGCCGAGCGACTTTCCTAGTTCTTGACCCTTCTAATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  GGGATGCTGGGAGCCGAGCGACTTTCCTAGTTCTTGACCCTTCTAATT-A  618

seq1  GAGTGATACAAAGAAGCTATGTACTAAAGACTCAACAGGCATTTCTACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATACAAAGAAGCTATGTACTAAAGACTCAACAGGCATTTCTACAC  668

seq1  ATTCTTCTTTTGGAGTGCCAGGTCTGAAAAAATAATCAGGATGTATAGAA  750
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  ATTCTTCTTTTGGAGTGCCAGGTGTGAAAAAATAATCAGGAGGTATAGAA  718

seq1  TAACAATATTGAAAGTGAGCTTTGTCTATAGTCAATTTTGCTTTATTATT  800
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAACAATATTGAAAGTGAGCCTTGTCTATAGTCAATTTTGCTTTATTATT  768

seq1  ATTATCTGAGATTTGGTTCTACTTGAGTTGACTTGTATTCCAAAAACATC  850
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTATGTGAGATTTGGTTTTACTTGAGTTGACTTGTATTCCAAAAACATC  818

seq1  ACTTAATCTTTACCAAAATATTATGTTTATCAAGTACAGCTTTAATCTGT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTTAATCTTTACCAAAATATTATGTTTATCAAGTACAGCTTTAATTTGT  868

seq1  TCTATCATTACATTAACAATTGAGTTCAAAAGTGCCTTCACTCACTTCTG  950
      ||||||||||||||| |||||||||||||||| ||||||||||||||| |
seq2  TCTATCATTACATTACCAATTGAGTTCAAAAGAGCCTTCACTCACTTCAG  918

seq1  CTGTCATAAGAGACAGGGGTTTTATAAACCATTTAATTTTAATTTCAAAA  1000
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTAAGAGACAGGGGTTTTATAAACCATTTAATTTTAATTTCAAAA  968

seq1  TTCCATTCAGTGAGCTGAAAAATTTGAGTTTGGAGTTTGCTTTTACATGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTCAGTGAGCTGAAAAATTTGAGTTTGGAGTTTGCTTTTACATGA  1018

seq1  TGAAATATAAATTAGTATTTTTTATATAATCAAAAGGAAACAACCACAAA  1100
      ||||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  TGAAATATAAATTAGTATTTTTTCTATAATCAAAAGGAACCAACCACAAA  1068

seq1  TTGAAATTATGACAATTCTAACGTTTGGTTGATCAAAATATTTGCATACA  1150
        |||||||||||||||||||||  |||  |||||||||| | |||||||
seq2  GGGAAATTATGACAATTCTAACGCCTGG-AGATCAAAATA-TAGCATACA  1116

seq1  TTATTGAATTC  1161
      ||| |||||||
seq2  TTA-TGAATTC  1126