BAC Information

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BAC

Clone NameB6Ng01-080C01
Chromosome11 (Build37)
Map Location 57,408,444 - 57,535,542
singlet/doubletdoublet
Overlap geneGalnt10
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3
Downstream geneSap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080C01.bB6Ng01-080C01.g
ACCDH895350DH895351
length3011,072
definitionDH895350|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C01, 5' end.DH895351|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,408,444 - 57,408,735)(57,534,463 - 57,535,542)
sequence
gaattcctctgtgcagacatgtcatggtcatgtatccactagctgcacag
cctgttttctttctttctttcttccttcctttctttctttctttctttct
ttctttctttctttctttctttctttctttctttctttctttctttcttc
cttccttccttccttccttccttcctttctttctctctctccctttcttt
ctttctttctttctttctttctttctttctttcttagacacacacacata
tatacgtatatatgtgtgtgtgtgtgtgtgtgtgagagagagagagagag
a
gaattcagtggcgaccccacagcctttgggggaggggggttgcagctgct
ctcccgacctttgcctggactctgcagagaaaaaacctctacagtctctg
tatagatattcgtgtaggcccttcccccatctgccagccatacatgaatg
gcgacaaagccctattagcaaaaggaatcagtagttggtgaagaactgcc
tctgccttccagttctgggttcgagtctcaagttggccttactctcaccc
tgcgtgatgactggcaggtggcagcatctctctggggtacagatttcctc
ttattcagccagccataaaggcctgatcaggttgaagagggtggaacttg
ctttgagatcaatccctgtcgttttgaaacattgctccttcctttgggat
gggacttgctaggatggagacacagtcacgtgctgatatgtaggtggcag
ggcgaatgtgaagtcagtggatctggtgctgacagctgaggtcagatggg
tgaaaggtaggtacggttattaggaaagacggtggcaggcaggaagtgaa
caaggggtccagacacctctaacacattcagcacatgcgcatacacccat
ggcacacttacacgatgcccacactcggccgcgccctccatacctacgcg
ctgtgcgtccctcctgatagcctccttgttatgccagtccttcagccttt
gttcagctcccaagaaaaatgtcttttttttgtcgactgtgtaattcctt
cagaaataaaagaagaaaattaagacaaagaagaaactatgaaaaagaag
aaaaagggaatattggcaataacaatggtccagaggctacactgcttaag
agaacactatttgccttttccagccctcagcatctttcctgagtgccagc
catgtgcctgctagatgggcttaagccaggggacacagaagctcagtaca
acccttggaaactcaccacccagagaggaaggaagacggccatccttcat
cccaggacaattgtccatttgttgctgccaacggaaggacctgaaacagc
ctggcagtcaagcaagctgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_57408444_57408735
seq2: B6Ng01-080C01.b_47_330

seq1  GAATTCCTCTGTGCAGACATGTCATGGTCATGTATCCACTAGCTGCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGTGCAGACATGTCATGGTCATGTATCCACTAGCTGCACAG  50

seq1  CCTGTTTTCTTTCTTTCTTTCTTCCTTCCTTTCTTTCTTTCTTTCTTTCT  100
      ||||||||||||||||||||||||||||        ||||||||||||||
seq2  CCTGTTTTCTTTCTTTCTTTCTTCCTTC--------CTTTCTTTCTTTCT  92

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  142

seq1  CTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTCTCTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTCTCTCTCC  192

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTAGACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTAGACACA  242

seq1  CACACATATATACGTATATATGTGTGTGTGTGTGTGTGTGTG  292
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATATACGTATATATGTGTGTGTGTGTGTGTGTGTG  284

seq1: chr11_57534463_57535542
seq2: B6Ng01-080C01.g_66_1137 (reverse)

seq1  AAGCAGCTTGCTTTGCCTACCAGGGCTGTCTCAGTACCTTCCCGTTGGGC  50
      ||||||||||| ||| || ||| |||||| ||||  |||| ||||| |||
seq2  AAGCAGCTTGC-TTGACTGCCA-GGCTGTTTCAGGTCCTT-CCGTT-GGC  46

seq1  AGCAACACACTGGGCACTTTGTCCTGTGGATG-AGTGTGCCCGTCTTTCC  99
      ||||||| | ||| ||  |||||||| ||||| ||  || ||||| ||||
seq2  AGCAACA-AATGGACA-ATTGTCCTG-GGATGAAGGATGGCCGTC-TTCC  92

seq1  TTCCTCTCCTGGGTGGTGAGTTTCCAAGGGGTTGTACTGAGCTTCTGTGT  149
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCCTCT-CTGGGTGGTGAGTTTCCAA-GGGTTGTACTGAGCTTCTGTGT  140

seq1  CCCCCCTGGCCTCAGCCCATCTAGCAGGCACATGGCTGGCACTCAGG-AA  198
        |||||||| | |||||||||||||||||||||||||||||||||| ||
seq2  --CCCCTGGCTTAAGCCCATCTAGCAGGCACATGGCTGGCACTCAGGAAA  188

seq1  GATGCTGAGGGCTGG-ACAGGC-AATAGTGTTCTCCTTAAGCAGTGTAGC  246
      ||||||||||||||| | |||| ||||||||||| |||||||||||||||
seq2  GATGCTGAGGGCTGGAAAAGGCAAATAGTGTTCT-CTTAAGCAGTGTAGC  237

seq1  CTCTGGACCATTGTTATTGCCAATATTCCCTTTTTCTTCTTTTTCATAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGACCATTGTTATTGCCAATATTCCCTTTTTCTTCTTTTTCATAGT  287

seq1  TTCTTCTTTGTCTTAATTTTCTTCTTTTATTTCTGAAGGAATTACACAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTGTCTTAATTTTCTTCTTTTATTTCTGAAGGAATTACACAGT  337

seq1  CGAC-AAAAAAAGACATTTTTCTTGGGAGCTGAACAAAGGCTGAAGGACT  395
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAAAAAAAAGACATTTTTCTTGGGAGCTGAACAAAGGCTGAAGGACT  387

seq1  GGCATAACAAGGAGGCTATCAGGAGGGACGCACAGCGCGTAGGTATGGAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAACAAGGAGGCTATCAGGAGGGACGCACAGCGCGTAGGTATGGAG  437

seq1  GGCGCGGCCGAGTGTGGGCATCGTGTAAGTGTGCCATGGGTGTATGCGCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCGGCCGAGTGTGGGCATCGTGTAAGTGTGCCATGGGTGTATGCGCA  487

seq1  TGTGCTGAATGTGTTAGAGGTGTCTGGACCCCTTGTTCACTTCCTGCCTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAATGTGTTAGAGGTGTCTGGACCCCTTGTTCACTTCCTGCCTG  537

seq1  CCACCGTCTTTCCTAATAACCGTACCTACCTTTCACCCATCTGACCTCAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGTCTTTCCTAATAACCGTACCTACCTTTCACCCATCTGACCTCAG  587

seq1  CTGTCAGCACCAGATCCACTGACTTCACATTCGCCCTGCCACCTACATAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCACCAGATCCACTGACTTCACATTCGCCCTGCCACCTACATAT  637

seq1  CAGCACGTGACTGTGTCTCCATCCTAGCAAGTCCCATCCCAAAGGAAGGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACGTGACTGTGTCTCCATCCTAGCAAGTCCCATCCCAAAGGAAGGA  687

seq1  GCAATGTTTCAAAACGACAGGGATTGATCTCAAAGCAAGTTCCACCCTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTTTCAAAACGACAGGGATTGATCTCAAAGCAAGTTCCACCCTCT  737

seq1  TCAACCTGATCAGGCCTTTATGGCTGGCTGAATAAGAGGAAATCTGTACC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTGATCAGGCCTTTATGGCTGGCTGAATAAGAGGAAATCTGTACC  787

seq1  CCAGAGAGATGCTGCCACCTGCCAGTCATCACGCAGGGTGAGAGTAAGGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGATGCTGCCACCTGCCAGTCATCACGCAGGGTGAGAGTAAGGC  837

seq1  CAACTTGAGACTCGAACCCAGAACTGGAAGGCAGAGGCAGTTCTTCACCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGAGACTCGAACCCAGAACTGGAAGGCAGAGGCAGTTCTTCACCA  887

seq1  ACTACTGATTCCTTTTGCTAATAGGGCTTTGTCGCCATTCATGTATGGCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGATTCCTTTTGCTAATAGGGCTTTGTCGCCATTCATGTATGGCT  937

seq1  GGCAGATGGGGGAAGGGCCTACACGAATATCTATACAGAGACTGTAGAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGGGGGAAGGGCCTACACGAATATCTATACAGAGACTGTAGAGG  987

seq1  TTTTTTCTCTGCAGAGTCCAGGCAAAGGTCGGGAGAGCAGCTGCAACCCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCTGCAGAGTCCAGGCAAAGGTCGGGAGAGCAGCTGCAACCCC  1037

seq1  CCTCCCCCAAAGGCTGTGGGGTCGCCACTGAATTC  1080
      |||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCAAAGGCTGTGGGGTCGCCACTGAATTC  1072