BAC Information

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BAC

Clone NameB6Ng01-080F10
Chromosome11 (Build37)
Map Location 32,023,284 - 32,165,750
singlet/doubletdoublet
Overlap geneLOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare
Upstream geneStc2, 2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2
Downstream geneHba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080F10.bB6Ng01-080F10.g
ACCDH895506DH895507
length8171,138
definitionDH895506|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F10, 5' end.DH895507|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,164,914 - 32,165,750)(32,023,284 - 32,024,440)
sequence
gaattcatatcctgtgtctgactttttcttgaattgttttttctttatag
acttgaaagaattatttatatatttaagtttaaaagtaagacttttggac
caggagtggtgaatgtctttaatctcagcgctctagatacagaagcaggc
acatatttctgagtcccaggccagcttggtttacatagtgacttccagat
tagtcagagccacatggtaagatcctgtctgaaaaaaaataatgaaaaac
atacaaaacaaaacaaaatccttttctttccttttttttttttttttttt
tttttttttttttttttttttttgggcacaaaagggagcccttttgctat
ttttgtgtagtttttgcccaaattttgatttttatgggggcatgggttca
gtggagtctcttgggggttctgaatttccttatctgcaagggcttctgct
ctgggggaagaaggggttactttgttgttttgagtcaggggttaactctg
tattccaggaagggttgggaattactgtgtagctagtctactgtgtagcc
taaccttaaactggtggggcctaccctctctgctcctggagtggtaagat
ttcagtgagcaccccctagccctgccttttccaagattattaacaagaga
cactcttttaagttttctttaaacatttattgctcattttaaatgaactt
atttacttaaaaaggttccattatgtgtccctggctgcctggagtagact
acgctggctagaactacagagatcctcctctgctgcgcctcatgtggatt
aagtgtggtcgcactct
gaattcaaaaggctgactaggctccgagaggtggctcgttgcttaagagc
attggctgctcttctagaagaccaaggaggtttgatttccaggacccata
tggaacgatggctcacagccacctataatcccagtctcaagggatctgat
acactactctgacctcctcaagcaccagacatacatataagcaaaacacc
cattacatcaaaataaaaaataaatttaaactttttaaagaatttttaaa
agatttataactatgctcaaacaactcaaagatatatgtgattttattca
gggcatggggaggggagatgaggaagtagagacagagaaaggcagagaga
gagagtagaggagtagaggcagaccatgagcacatggagagaggggagag
gagcaagaggacagggcaagagcagtgtaaatatatttcaagaaaacaaa
agcagggaaataaggtgaagttaatacaagatatgaaaacagaatacaaa
aagaaaatagaattattgaagagtcacctgaaatgaagagaattaaaaac
tcaatgagccaaataaaaccctcacctataatgggaatcagtatccgatg
agacaaggtgagaggcactgggtcatctaatgaggttcacatgggcagta
catggtagagcgctggaacaccacgaaaagacatagcctccatttatcag
cgcagaaggataccatgccaatgaataggaaaaaatttcaagaacatcat
agaagaaaacgttccaaacctaaagaaagagataccctgtccaggtaaaa
gagacttagagaacaccaaatagacagaaaccagaaaagaaactcccgct
atcacattagaggtaaaacaataaaaacatagaataaagaaagctggaga
gagtcgtcattttataagggaaggctcgccagaataactgtttattcaca
ggaaatttaaagccagagtctggaaaagtgttttccaggttctgaagaca
cacacagcccagatattacacccagcaaactataaatcaatcaagaggat
tgagacttctctaaaaatggatcaagatttagggctcttaaacgaactac
agacgattctggcaggaatattttgttctctagaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_32164914_32165750
seq2: B6Ng01-080F10.b_51_867 (reverse)

seq1  AGAGTGGCGACGCACACCTTTAATCCCAGCAC-TGAGGCGGCAGCAGGAG  49
      ||||| ||||| |||||  ||||||    ||| |||||| |||||| |||
seq2  AGAGT-GCGAC-CACAC--TTAATC----CACATGAGGC-GCAGCA-GAG  40

seq1  GAGGATCTCTGTGAGTTCTAGACCAGCGTAGTCTAACTCCAGGCAGCCAG  99
      |||||||||||| |||||||| |||||||||||| |||||||||||||||
seq2  GAGGATCTCTGT-AGTTCTAG-CCAGCGTAGTCT-ACTCCAGGCAGCCAG  87

seq1  GGACACATAATGGAACCCTGTCTTAAGTAAATAAGTTCATTTTAAAATGA  149
      |||||||||||||||||   | ||||||||||||||||| ||||||||||
seq2  GGACACATAATGGAACC--TTTTTAAGTAAATAAGTTCA-TTTAAAATGA  134

seq1  GACAATAAATGTTCTAAAGAAAAACTTAAAAGAGTTGTCTCTTGTTAATA  199
      | ||||||||||| ||||| |||||||||||||| |||||||||||||||
seq2  G-CAATAAATGTT-TAAAG-AAAACTTAAAAGAG-TGTCTCTTGTTAATA  180

seq1  ATCTTGGAAAAGGCAGGGCCTAGGGGTGCTCACTTGAAATCCTACCACTC  249
      |||||||||||||||||||   ||||||||||| ||||||| ||||||||
seq2  ATCTTGGAAAAGGCAGGGCTAGGGGGTGCTCAC-TGAAATCTTACCACTC  229

seq1  CAGGAGCAGAGAAGGTAGGCGCCACCAGTTTAAGGCTAGGCTACACAGTA  299
      |||||||||||| ||||||| |||||||||||||| ||||||||||||||
seq2  CAGGAGCAGAGAGGGTAGGCCCCACCAGTTTAAGGTTAGGCTACACAGTA  279

seq1  GACTAGCTACACAGTAAATCCCAAGCCATCCTGGAATACAGAGTTAAACC  349
      ||||||||||||||||| |||||| || ||||||||||||||||||| ||
seq2  GACTAGCTACACAGTAATTCCCAACCCTTCCTGGAATACAGAGTTAACCC  329

seq1  CTGACTCAAAACAACAAAGTAACACCATCATCGCCCAGAGCAGAAGGCCT  399
      ||||||||||||||||||||||| || || || ||||||||||||| |||
seq2  CTGACTCAAAACAACAAAGTAACCCCTTCTTCCCCCAGAGCAGAAGCCCT  379

seq1  TGCAGATAAGGAAACTCAGAAACCACAAGAGACTACACTGAAACCATGAC  449
      |||||||||||||| |||||| || ||||||||| ||||||| ||||| |
seq2  TGCAGATAAGGAAATTCAGAACCCCCAAGAGACTCCACTGAACCCATGCC  429

seq1  ACCATAAAAATCAAAATTCTGGCAATAACTACACAGAAATAGCAAAATGG  499
       |||||||||||||||||  ||||| ||||||||| ||||||||||| ||
seq2  CCCATAAAAATCAAAATTTGGGCAAAAACTACACAAAAATAGCAAAAGGG  479

seq1  CTACCTATTGTGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  549
      || ||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTTGTGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  529

seq1  AAAAAAAGGAAAGAAAAGGATTTTGTTTTGTTTTGTATGTTTTTCATTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGGAAAGAAAAGGATTTTGTTTTGTTTTGTATGTTTTTCATTAT  579

seq1  TTTTTTTCAGACAGGATCTTACCATGTGGCTCTGACTAATCTGGAAGTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCAGACAGGATCTTACCATGTGGCTCTGACTAATCTGGAAGTCA  629

seq1  CTATGTAAACCAAGCTGGCCTGGGACTCAGAAATATGTGCCTGCTTCTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAAACCAAGCTGGCCTGGGACTCAGAAATATGTGCCTGCTTCTGT  679

seq1  ATCTAGAGCGCTGAGATTAAAGACATTCACCACTCCTGGTCCAAAAGTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAGCGCTGAGATTAAAGACATTCACCACTCCTGGTCCAAAAGTCT  729

seq1  TACTTTTAAACTTAAATATATAAATAATTCTTTCAAGTCTATAAAGAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTAAACTTAAATATATAAATAATTCTTTCAAGTCTATAAAGAAAA  779

seq1  AACAATTCAAGAAAAAGTCAGACACAGGATATGAATTC  837
      ||||||||||||||||||||||||||||||||||||||
seq2  AACAATTCAAGAAAAAGTCAGACACAGGATATGAATTC  817

seq1: chr11_32023284_32024440
seq2: B6Ng01-080F10.g_69_1206

seq1  GAATTCAAAAGGCTGACTAGGCTCCGAGAGGTGGCTCGTTGCTTAAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGGCTGACTAGGCTCCGAGAGGTGGCTCGTTGCTTAAGAGC  50

seq1  ATTGGCTGCTCTTCTAGAAGACCAAGGAGGTTTGATTTCCAGGACCCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTGCTCTTCTAGAAGACCAAGGAGGTTTGATTTCCAGGACCCATA  100

seq1  TGGAACGATGGCTCACAGCCACCTATAATCCCAGTCTCAAGGGATCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACGATGGCTCACAGCCACCTATAATCCCAGTCTCAAGGGATCTGAT  150

seq1  ACACTACTCTGACCTCCTCAAGCACCAGACATACATATAAGCAAAACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACTCTGACCTCCTCAAGCACCAGACATACATATAAGCAAAACACC  200

seq1  CATTACATCAAAATAAAAAATAAATTTAAACTTTTTAAAGAATTTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATCAAAATAAAAAATAAATTTAAACTTTTTAAAGAATTTTTAAA  250

seq1  AGATTTATAACTATGCTCAAACAACTCAAAGATATATGTGATTTTATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATAACTATGCTCAAACAACTCAAAGATATATGTGATTTTATTCA  300

seq1  GGGCATGGGGAGGGGAGATGAGGAAGTAGAGACAGAGAAAGGCAGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGGGGAGGGGAGATGAGGAAGTAGAGACAGAGAAAGGCAGAGAGA  350

seq1  GAGAGTAGAGGAGTAGAGGCAGACCATGAGCACATGGAGAGAGGGGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAGAGGAGTAGAGGCAGACCATGAGCACATGGAGAGAGGGGAGAG  400

seq1  GAGCAAGAGGACAGGGCAAGAGCAGTGTAAATATATTTCAAGAAAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGAGGACAGGGCAAGAGCAGTGTAAATATATTTCAAGAAAACAAA  450

seq1  AGCAGGGAAATAAGGTGAAGTTAATACAAGATATGAAAACAGAATACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGAAATAAGGTGAAGTTAATACAAGATATGAAAACAGAATACAAA  500

seq1  AAGAAAATAGAATTATTGAAGAGTCACCTGAAATGAAGAGAATTAAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATAGAATTATTGAAGAGTCACCTGAAATGAAGAGAATTAAAAAC  550

seq1  TCAATGAGCCAAATAAAACCCTCACCTATAATGGGAATCAGTATCCGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAGCCAAATAAAACCCTCACCTATAATGGGAATCAGTATCCGATG  600

seq1  AGACAAGGTGAGAGGCACTGGGTCATCTAATGAGGTTCACATGGGCAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGTGAGAGGCACTGGGTCATCTAATGAGGTTCACATGGGCAGTA  650

seq1  CATGGTAGAGCGCTGGAACACCACGAAAAGACATAGCCTCCATTTATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAGAGCGCTGGAACACCACGAAAAGACATAGCCTCCATTTATCAG  700

seq1  CGCAGAAGGATACCATGCCAATGAATAGGAAAAAATTTCAAGAACATCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGAAGGATACCATGCCAATGAATAGGAAAAAATTTCAAGAACATCAT  750

seq1  AGAAGAAAACGTTCCAAACCTAAAGAAAGAGATACCCTGTCCAGGTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAACGTTCCAAACCTAAAGAAAGAGATACCCTGTCCAGGTAAAA  800

seq1  GAGACTTAGAGAACACCAAATAGACAG-AACCAGAAAAGAAACTCCCGCT  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGACTTAGAGAACACCAAATAGACAGAAACCAGAAAAGAAACTCCCGCT  850

seq1  ATCACATTAGAGTTAAAACAATAAAAACATAGAATAAAGAAAGCTGGAAG  899
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  ATCACATTAGAGGTAAAACAATAAAAACATAGAATAAAGAAAGCTGG-AG  899

seq1  AGAGTCGTCA-TTTATAAAGGCAGGCTCGCCAGAATAACTGTTTATTCAA  948
      |||||||||| ||||||| || |||||||||||||||||||||||||| |
seq2  AGAGTCGTCATTTTATAAGGGAAGGCTCGCCAGAATAACTGTTTATTC-A  948

seq1  CAGGAAATTTAAAGCCAAGAGTCTGGAAAAGTGTTTTCCAAGTTCTGAAA  998
      |||||||||||||||| ||||||||||||||||||||||| |||||| ||
seq2  CAGGAAATTTAAAGCC-AGAGTCTGGAAAAGTGTTTTCCAGGTTCTG-AA  996

seq1  GAC-CACAACCACCAGCCCAGAATATTACACCCAGCAAAACTATTAAAAT  1047
      ||| ||||     |||||||| |||||||||||||| |||||||  ||||
seq2  GACACACA-----CAGCCCAG-ATATTACACCCAGC-AAACTAT--AAAT  1037

seq1  CAAATCAAAGAGGAATGAGAACTTCTCATAAAAATGGATCAAAGGAATTT  1097
      | |||| ||||||| |||| ||||||| ||||||||||||||    ||||
seq2  C-AATC-AAGAGGATTGAG-ACTTCTC-TAAAAATGGATCAA---GATTT  1080

seq1  ATGGCCTCTAAACCAGACCTACAGACGATTCTGCAAGGAATATTTTGTTC  1147
      | |||   |||||  || |||||||||||||||  |||||||||||||||
seq2  AGGGCTCTTAAAC--GAACTACAGACGATTCTGGCAGGAATATTTTGTTC  1128

seq1  TAAAGAGGAA  1157
      |  |||||||
seq2  TCTAGAGGAA  1138