BAC Information

Click to search

BAC

Clone NameB6Ng01-080J14
Chromosome11 (Build37)
Map Location 47,825,704 - 47,979,381
singlet/doubletdoublet
Overlap genenone
Upstream geneSgcd, LOC628753, LOC100039647
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080J14.bB6Ng01-080J14.g
ACCDH895691DH895692
length8801,079
definitionDH895691|Mus musculus domesticus DNA, BAC clone: B6Ng01-080J14, 5' end.DH895692|Mus musculus domesticus DNA, BAC clone: B6Ng01-080J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,978,867 - 47,979,381)(47,825,704 - 47,826,802)
sequence
gaattcaccatccacacgtttttttaattcggatattttctttatttaca
tttcaaatgtaatcccctttcccggtccaccccccgaaaccccctatcct
atcccccctgccactgcttctataagggtgttctaccacccacccactca
ctcctacctcctcaccctctattcccctacactggggcatctattgagcc
ttcataggatgaaggacctctcctcccattgatgcctgacaaggccatcc
tctgctacatatgcagctggagccatgtgtactccttggctgatggctta
gttcctgggagctctgagagctctggttggttgatattgttgttcttccg
atggggttgcaaaccacttcagctccttcgatcttttctctaagtcctct
gtaggggaccccacactcagtccaatggttggctgcaaagatccacctct
gtatttgtcaggctctggcagagcctctcaagagacagctatatcagcct
cctgtcaatatgcacttcttggcatccacaatagtgtctgggtttggtgg
ctgtatatgggatggatccccagtgggacagtctctgggtggcctttcct
tcagtctctgctctacactttatctccatatttgctcctgtgattattta
gctttccttttgagaagaactgaagcacccacacttttggtcttccttct
tctcaaccctgcttctattttgaagatacatccacaaaccatgcatttga
gtactcatgccttttgaaaccttttccatacctatatatacagatgtgtc
ttgtttaaacattgagcaggttatgtgttattcatttttatgaaaaaatt
tccaagcatccactcagtttgtgcaaggaa
gaattcagtagttgttcaattcatgaagctggatgtctcagccaatttgc
aatgtacatcaaaatcctgaagaaatagacaataatgctattaaaggaat
ggaaagaacttgctaacatgcaagagcaagcaggtagagagagagagaga
gagagagagagagagagagagagagagagctttcttcttcttctttatct
aggtttccagcagaatgtgtggcccagattaaaggtagatgtcacatcaa
aaggtttggattaatggtgcattgccacatgtcaaagatctggattagaa
atggccctcccacttcaaatgatttaagtaaaaactcactaacaggtgtt
accagacatttgggttttactaaattctagatgtagtcaagttgacaatc
aagaatagccatcacaaatatggagagtctctccatttatagtacttcca
ccagtggcctatgacagtgcccaccatttaagtattagacctttagctaa
atactttattatgtgtgtctctggtaatatgtaatgaatccagagattta
aatatcagaatggggctattagtcaatgtaaaatatctgtctttaggaca
aaccatataattctccaccagaaaaagcagaaagaacagataaacgggat
catgtatacctattgcttttgtaatatactcagtaaagttcacagtcagt
aaaggtcaacaagtgctttcttgaataacgaatataatagaaggcaaatc
aaggaaaaatgtgaaagttcataaagtttgaaaggccaagaagcattgct
atggtagaagtcagatttaagtctgaaatttagcctatgggatttacatc
aggaccctggacagcgggctacctctggggtccctcagtaatggagagat
catattgcttcaacatggaaagggcattctcatttaaaatgcatccagtt
atagctatttaatatttctattatggttcactattttcaatatcaaggag
acagatagttttacaaaagggttgtaaattaaaaatgagcatctatggtg
atcagaagcccctgaaggttatctatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_47978867_47979381
seq2: B6Ng01-080J14.b_45_560 (reverse)

seq1  AGTGCATATTGACAGGAGGCTGATATAGCTGTCTCTTGAGAGGCTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATATTGACAGGAGGCTGATATAGCTGTCTCTTGAGAGGCTCTGCC  50

seq1  AGAGCCTGACAAATACAGAGGTGGATCTTTGCAGCCAACCATTGGACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGACAAATACAGAGGTGGATCTTTGCAGCCAACCATTGGACTGA  100

seq1  GTGTGGGGTCCCCTACAGAGGACTTAGAGAAAAGATCGAAGGAGCTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGGTCCCCTACAGAGGACTTAGAGAAAAGATCGAAGGAGCTGAAG  150

seq1  TGGTTTGCAACCCCATCGGAAGAACAACAATATCAACCAACCAGAGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGCAACCCCATCGGAAGAACAACAATATCAACCAACCAGAGCTCT  200

seq1  CAGAGCTCCCAGGAACTAAGCCATCAGCCAAGGAGTACACATGGCTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCCCAGGAACTAAGCCATCAGCCAAGGAGTACACATGGCTCCAG  250

seq1  CTGCATATGTAGCAGAGGATGGCCTTGTCAGGCATCAATGGGAGGAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATGTAGCAGAGGATGGCCTTGTCAGGCATCAATGGGAGGAGAGG  300

seq1  TCCTTCATCCTATGAAGGCTCAATAGATGCCCCAGTGTAGGGGAATAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATCCTATGAAGGCTCAATAGATGCCCCAGTGTAGGGGAATAGAG  350

seq1  GGTGAGGAGGTAGGAGTGAGTGGGTGGGTGGTAGAACACCCTTATAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGAGGTAGGAGTGAGTGGGTGGGTGGTAGAACACCCTTATAGAAG  400

seq1  CAGTGGCAGGGGGGATAGGATAGGGGGTTTCGGGGGGTGGACCGGGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCAGGGGGGATAGGATAGGGGGTTTCGGGGGGTGGACCGGGAAAG  450

seq1  GGGATTACATTTGAAATGTAAATAAAGAAAATATCC-AATTAAAAAAACG  499
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGGATTACATTTGAAATGTAAATAAAGAAAATATCCGAATTAAAAAAACG  500

seq1  TGTGGATGGTGAATTC  515
      ||||||||||||||||
seq2  TGTGGATGGTGAATTC  516

seq1: chr11_47825704_47826802
seq2: B6Ng01-080J14.g_69_1147

seq1  GAATTCAGTAGTTGTTCAATTCATGAAGCTGGATGTCTCAGCCAATTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGTTGTTCAATTCATGAAGCTGGATGTCTCAGCCAATTTGC  50

seq1  AATGTACATCAAAATCCTGAAGAAATAGACAATAATGCTATTAAAGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACATCAAAATCCTGAAGAAATAGACAATAATGCTATTAAAGGAAT  100

seq1  GGAAAGAACTTGCTAACATGCAAGAGCAAGCAGGTAGAGAGAGAGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAACTTGCTAACATGCAAGAGCAAGCAGGTAGAGAGAGAGAGAGA  150

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTTTCTTCTTCTTCTTTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTTTCTTCTTCTTCTTTATCT  200

seq1  AGGTTTCCAGCAGAATGTGTGGCCCAGATTAAAGGTAGATGTCACATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCCAGCAGAATGTGTGGCCCAGATTAAAGGTAGATGTCACATCAA  250

seq1  AAGGTTTGGATTAATGGTGCATTGCCACATGTCAAAGATCTGGATTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTGGATTAATGGTGCATTGCCACATGTCAAAGATCTGGATTAGAA  300

seq1  ATGGCCCTCCCACTTCAAATGATTTAAGTAAAAACTCACTAACAGGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCTCCCACTTCAAATGATTTAAGTAAAAACTCACTAACAGGTGTT  350

seq1  ACCAGACATTTGGGTTTTACTAAATTCTAGATGTAGTCAAGTTGACAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACATTTGGGTTTTACTAAATTCTAGATGTAGTCAAGTTGACAATC  400

seq1  AAGAATAGCCATCACAAATATGGAGAGTCTCTCCATTTATAGTACTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAGCCATCACAAATATGGAGAGTCTCTCCATTTATAGTACTTCCA  450

seq1  CCAGTGGCCTATGACAGTGCCCACCATTTAAGTATTAGACCTTTAGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGCCTATGACAGTGCCCACCATTTAAGTATTAGACCTTTAGCTAA  500

seq1  ATACTTTATTATGTGTGTCTCTGGTAATATGTAATGAATCCAGAGATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTATTATGTGTGTCTCTGGTAATATGTAATGAATCCAGAGATTTA  550

seq1  AATATCAGAATGGGGCTATTAGTCAATGTAAAATATCTGTCTTTAGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGAATGGGGCTATTAGTCAATGTAAAATATCTGTCTTTAGGACA  600

seq1  AACCATATAATTCTCCACCAGAAAAAGCAGAAAGAACAGATAAACGGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATATAATTCTCCACCAGAAAAAGCAGAAAGAACAGATAAACGGGAT  650

seq1  CATGTATACCTATTGCTTTTGTAATATACTCAGTAAAGTTCACAGTCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATACCTATTGCTTTTGTAATATACTCAGTAAAGTTCACAGTCAGT  700

seq1  AAAGGTCAACAAGTGC-TTCTTGAATAACGAATATAATAGAAGGCAAATC  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAGGTCAACAAGTGCTTTCTTGAATAACGAATATAATAGAAGGCAAATC  750

seq1  AAGGAAAAATGTGAAAGTTCATAAAGTTTGAAAGGCCAAGAAGCATTGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAATGTGAAAGTTCATAAAGTTTGAAAGGCCAAGAAGCATTGCT  800

seq1  ATGGTAGAAGTCAGATTTAAGTCTGAAATTTAGCCTATGGGATTTACAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGGTAGAAGTCAGATTTAAGTCTGAAATTTAGCCTATGGGATTTAC-AT  849

seq1  CAGGACCCTGGACAGCGGCCTACCTCTGGGGTCCTTCAGTAATGGAGAGA  899
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  CAGGACCCTGGACAGCGGGCTACCTCTGGGGTCCCTCAGTAATGGAGAGA  899

seq1  TCAATATTGCTTCAACATGGAAAGGGCATTCTCATTTAAAAAATGCATTC  949
      || ||||||||||||||||||||||||||||||||||  |||||||| ||
seq2  TC-ATATTGCTTCAACATGGAAAGGGCATTCTCATTT--AAAATGCA-TC  945

seq1  TAGTTAATAGCATATTTAAATATATCCTATGTATGGTTCACTAATTTTCA  999
       |||| ||||| ||||| ||||| | |||| ||||||||||| |||||| 
seq2  CAGTT-ATAGC-TATTT-AATAT-TTCTAT-TATGGTTCACT-ATTTTC-  988

seq1  AATATTCAAGGAAGACAAGATAAGTTTTACAAAAGGGTTGGTAATATAAA  1049
      |||| |||||| |||| |||| ||||||||||||||||| |||| || ||
seq2  AATA-TCAAGG-AGAC-AGAT-AGTTTTACAAAAGGGTT-GTAA-ATTAA  1032

seq1  ATATGAGCCATCTATGGTGATTCAGTAAGCCCCTG-AGGTTATCCTATGA  1098
      | ||||| |||||||||||| |||| ||||||||| ||||||| ||||||
seq2  AAATGAG-CATCTATGGTGA-TCAG-AAGCCCCTGAAGGTTAT-CTATGA  1078

seq1  C  1099
      |
seq2  C  1079