BAC Information

Click to search

BAC

Clone NameB6Ng01-081F06
Chromosome11 (Build37)
Map Location 55,321,868 - 55,460,990
singlet/doubletdoublet
Overlap geneGlra1
Upstream geneFnip1, Rapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp
Downstream geneNmur2, LOC100040816, LOC624168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081F06.bB6Ng01-081F06.g
ACCDH896214DH896215
length647900
definitionDH896214|Mus musculus domesticus DNA, BAC clone: B6Ng01-081F06, 5' end.DH896215|Mus musculus domesticus DNA, BAC clone: B6Ng01-081F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,321,868 - 55,322,513)(55,460,092 - 55,460,990)
sequence
tctggcccactaaggccaagttcgctttgtccagaccgaaacgttcaaag
gcaagtatgtatttttcctttggaggcccactgagccaggcttggtcttc
actagaatccagttagaatgaaactgcccttcctacacagaaggggtggt
ctgggggctctcaggacagaagctaacatgttcctacatctatggtttgt
gggcctgttttgtcaacaccctggctttggggtgcagttttgggggtttt
tgttttgtggtaagggggagcaggctgtctagatgctttcttttgtaatc
cctttccctcttccttttctaaatctggggtgaaagtgaagagttactgg
acatcccttctttactggaccattggtcagtatttcaatcccaggcagct
cttatcggaagactttttcttcccctctcaaacacctgcttgggacaagt
agctgagtagctgggaataaaccatttaactgcttaaccggtgggtgaga
ccatcagtagtaaatggttgacaaggacctagtcttcagcatttgagctc
agtgctgtgcccatacccccctgagttgtccctgagatgctctcagcacc
attgctgcctattgtcactgcatctccgcctgaattattcacagggg
gaattcacctggcctatgactgtccagttttataaagtgcaccatctaat
gaccgtgcagaccatgcagtaaagtacaatgagccacaggctaggaggca
gggaatttgatgacccatagtgagactccagccagctgctactctctgga
ctcagtgcctgaaccccagcttctgtctctggacccactccctgaaccca
gctgattgtctctggactcagtgcttaagaacttgagtctgactttgttc
ttctattgagatggggtgaaccacctagatcatgatttggcaatgagacc
agcacagcccctcacacttgaaaagatggaattgtgagaaccttagagag
catctaacaaagcaggttactagtagtgtcatcctgctctcctataagct
cccagaaaacaacagtagccatcaaagactccattgcacaggtaaagaaa
ctgaggcctaaagaaatgacacagtggtgaatctcaaagcagggttaggg
cagaggctagtccagaatgcaagactcagaacaccttgtttctaccacca
ccttcttatgtttcccatatatactcaaattctggacaagaaacactcaa
accacgtttcacagagccctggcatttggacaaactggcatacaatcatc
agattgccaagtttcttcaaagatctgcacaattgatcatgtcccacagt
cccaactatcacctcttttcccctattagaaaggcactatggactggagg
atggaagagcaatgccttatgcctgccctccctcccttcagagctcttta
ttgtatgtctaatagagaacatcaaatagaagctaccaaagctctacact
cttgatagccttggcacagtgccttagagaccccctggctttaggtagaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_55321868_55322513
seq2: B6Ng01-081F06.b_35_681

seq1  TCTGGCCCACTAAGGCCAAGTT-GCTTTGTCCAGACCGAAACGTTCAAAG  49
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTGGCCCACTAAGGCCAAGTTCGCTTTGTCCAGACCGAAACGTTCAAAG  50

seq1  GCAAGTATGTATTTTTCCTTTGGAGGCCCACTGAGCCAGGCTTGGTCTTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTATGTATTTTTCCTTTGGAGGCCCACTGAGCCAGGCTTGGTCTTC  100

seq1  ACTAGAATCCAGTTAGAATGAAACTGCCCTTCCTACACAGAAGGGGTGGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATCCAGTTAGAATGAAACTGCCCTTCCTACACAGAAGGGGTGGT  150

seq1  CTGGGGGCTCTCAGGACAGAAGCTAACATGTTCCTACATCTATGGTTTGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGCTCTCAGGACAGAAGCTAACATGTTCCTACATCTATGGTTTGT  200

seq1  GGGCCTGTTTTGTCAACACCCTGGCTTTGGGGTGCAGTTTTGGGGGTTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGTTTTGTCAACACCCTGGCTTTGGGGTGCAGTTTTGGGGGTTTT  250

seq1  TGTTTTGTGGTAAGGGGGAGCAGGCTGTCTAGATGCTTTCTTTTGTAATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTGGTAAGGGGGAGCAGGCTGTCTAGATGCTTTCTTTTGTAATC  300

seq1  CCTTTCCCTCTTCCTTTTCTAAATCTGGGGTGAAAGTGAAGAGTTACTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCTCTTCCTTTTCTAAATCTGGGGTGAAAGTGAAGAGTTACTGG  350

seq1  ACATCCCTTCTTTACTGGACCATTGGTCAGTATTTCAATCCCAGGCAGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCTTCTTTACTGGACCATTGGTCAGTATTTCAATCCCAGGCAGCT  400

seq1  CTTATCGGAAGACTTTTTCTTCCCCTCTCAAACACCTGCTTGGGACAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCGGAAGACTTTTTCTTCCCCTCTCAAACACCTGCTTGGGACAAGT  450

seq1  AGCTGAGTAGCTGGGAATAAACCATTTAACTGCTTAACCGGTGGGTGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGTAGCTGGGAATAAACCATTTAACTGCTTAACCGGTGGGTGAGA  500

seq1  CCATCAGTAGTAAATGGTTGACAAGGACCTAGTCTTCAGCATTTGAGCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGTAGTAAATGGTTGACAAGGACCTAGTCTTCAGCATTTGAGCTC  550

seq1  AGTGCTGTGCCCAGACCCCCCTGAGTTGTCCCTGAGATGCTCTCAGCACC  599
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGTGCCCATACCCCCCTGAGTTGTCCCTGAGATGCTCTCAGCACC  600

seq1  ATTGCTGCCTATTGTCACTGCATCTCCGCCTGAATTATTCACAGGGG  646
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGCCTATTGTCACTGCATCTCCGCCTGAATTATTCACAGGGG  647

seq1: chr11_55460092_55460990
seq2: B6Ng01-081F06.g_70_969 (reverse)

seq1  TTCTACCTGATAGCCAGGGGGTCTCTAAGGCACTGTGCC-AGGCTATC-A  48
      |||||||| | |||||||||||||||||||||||||||| |||||||| |
seq2  TTCTACCT-AAAGCCAGGGGGTCTCTAAGGCACTGTGCCAAGGCTATCAA  49

seq1  GAGTGTAGAGCTTTGGTAGCTTCTATTTGATGTTCTCTATTAGGACATAC  98
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGTGTAGAGCTTTGGTAGCTTCTATTTGATGTTCTCTATTA-GACATAC  98

seq1  AATAAAGAGCTCTGAAGGGAGGGAGGGCAGGCATAAGGCATTGCTCTTCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAGCTCTGAAGGGAGGGAGGGCAGGCATAAGGCATTGCTCTTCC  148

seq1  ATCCTCCAGTCCATAGTGCCTTTCTAATAGGGGAAAAGAGGTGATAGTTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCAGTCCATAGTGCCTTTCTAATAGGGGAAAAGAGGTGATAGTTG  198

seq1  GGACTGTGGGACATGATC-ATTGTGCAGATCTTTGAAGAAACTTGGCAAT  247
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGACTGTGGGACATGATCAATTGTGCAGATCTTTGAAGAAACTTGGCAAT  248

seq1  CTGATGATTGTATGCCAGTTTGTCCAAATGCCAGGGCTCTGTGAAACGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTGTATGCCAGTTTGTCCAAATGCCAGGGCTCTGTGAAACGTG  298

seq1  GTTTGAGTGTTTCTTGTCCAGAATTTGAGTATATATGGGAAACATAAGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTGTTTCTTGTCCAGAATTTGAGTATATATGGGAAACATAAGAA  348

seq1  GGTGGTGGTAGAAACAAGGTGTTCTGAGTCTTGCATTCTGGACTAGCCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGTAGAAACAAGGTGTTCTGAGTCTTGCATTCTGGACTAGCCTC  398

seq1  TGCCCTAACCCTGCTTTGAGATTCACCACTGTGTCATTTCTTTAGGCCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTAACCCTGCTTTGAGATTCACCACTGTGTCATTTCTTTAGGCCTC  448

seq1  AGTTTCTTTACCTGTGCAATGGAGTCTTTGATGGCTACTGTTGTTTTCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTTACCTGTGCAATGGAGTCTTTGATGGCTACTGTTGTTTTCTG  498

seq1  GGAGCTTATAGGAGAGCAGGATGACACTACTAGTAACCTGCTTTGTTAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTATAGGAGAGCAGGATGACACTACTAGTAACCTGCTTTGTTAGA  548

seq1  TGCTCTCTAAGGTTCTCACAATTCCATCTTTTCAAGTGTGAGGGGCTGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTAAGGTTCTCACAATTCCATCTTTTCAAGTGTGAGGGGCTGTG  598

seq1  CTGGTCTCATTGCCAAATCATGATCTAGGTGGTTCACCCCATCTCAATAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTCATTGCCAAATCATGATCTAGGTGGTTCACCCCATCTCAATAG  648

seq1  AAGAACAAAGTCAGACTCAAGTTCTTAAGCACTGAGTCCAGAGACAATCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAAGTCAGACTCAAGTTCTTAAGCACTGAGTCCAGAGACAATCA  698

seq1  GCTGGGTTCAGGGAGTGGGTCCAGAGACAGAAGCTGGGGTTCAGGCACTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTTCAGGGAGTGGGTCCAGAGACAGAAGCTGGGGTTCAGGCACTG  748

seq1  AGTCCAGAGAGTAGCAGCTGGCTGGAGTCTCACTATGGGTCATCAAATTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGAGAGTAGCAGCTGGCTGGAGTCTCACTATGGGTCATCAAATTC  798

seq1  CCTGCCTCCTAGCCTGTGGCTCATTGTACTTTACTGCATGGTCTGCACGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCCTAGCCTGTGGCTCATTGTACTTTACTGCATGGTCTGCACGG  848

seq1  TCATTAGATGGTGCACTTTATAAAACTGGACAGTCATAGGCCAGGTGAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGATGGTGCACTTTATAAAACTGGACAGTCATAGGCCAGGTGAAT  898

seq1  TC  899
      ||
seq2  TC  900