BAC Information

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BAC

Clone NameB6Ng01-081F07
Chromosome11 (Build37)
Map Location 37,552,509 - 37,697,639
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz2, LOC100039148
Downstream geneLOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081F07.bB6Ng01-081F07.g
ACCDH896216DH896217
length1,0881,097
definitionDH896216|Mus musculus domesticus DNA, BAC clone: B6Ng01-081F07, 5' end.DH896217|Mus musculus domesticus DNA, BAC clone: B6Ng01-081F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,696,539 - 37,697,639)(37,552,509 - 37,553,612)
sequence
gaattctggcaaagagggtatagccactcttgcaatggcttccatttttt
ttcaggcaatatttgtgtagaagacattttctccccctaacacaagacaa
acagttcttcagaatcctagtctagaaggataatcttcagcaactttggt
tctaggaattcagttagaagatgtgtattcttagcttctcatctaccata
gaatgcctaagacattcaatgaccttacaaagtacatgcatcttttaatg
ttctctcctttttatattaattaaaataaaataaaacaagtactgaataa
aaacagatttttgggacagaaagtaacaatagaaatatgtatgaagttgt
gttccagaaatagctgctgggttgtaatgtgtgtgactctctctttcatg
tgcatccttccgtttttactgccagacacactctgctctctgacttgtct
ccatgcatccacacaaaccaaactggacagtgcgttgtgttcatcttcat
tgtatcatagagcatgcctctccctttcatgtttcctgttggaactgatt
taaggagctttgccagtgtgtctttttcacttcgatcttttaagagctgg
ctaaccttcagaaagatgatgttctgttctgctatctctctgttgtcctg
tgaggaacatttaggcaggctggtgttttttgctgttctatatgttgtgc
agtgagcacccttgaccctcatatccttatccgcacaagcaaagttgttt
tctaggaaccgtgctcaaaggatgagttctgtaatatggggcaggcaggt
gggaaattttcatggcaaatgtactcatttctccgatgacttattacaaa
gaactcatattctaggtacaaaaaacatgggcccgaatcggtgttatgcc
tcttggtgtctggctgtggttcccatcttctgcttcttccttttcaggtt
gtctagtgcacacatgactggaagataaagtttgagtccctatataggaa
ctcagagtctgcatccgcatgccacagaagatggcctgagctttggattt
caggtccttcgtcttctctctctctttttttttttttt
gaattcaatattggttatatatgttaaaatactgaaccaatacaagaact
cagaaccaagaagattattaagataactatactaatagtgtacacaattc
aggcactaaaaatggtctgtgtaatgctatgacaaggagtcacacttaag
gcattgtgatgtattgtaaagtgtcatcaggaagttaattaatctatatt
aaacatgtcaagatgtgctattagatgacagaactaatccatgggagcct
tacacattgcataaaatctatctacacacatacacggcctcaggttgatg
gaggttatgttttggcatttctacgttaacttatacttccactgctatct
tttaaaatgtctcataatataagaagacatttctttagatgtggagcaaa
gaaggtttgaagagataagacgaagagttgtgtatatgttgctgactctg
aaatggaattgtaagtaggcaaaatttgaaatcactgattcttatgacat
ttcagtagttagtaagctttgtgagttttgcctatttgtcctgattgaga
agtctcaaccctttactaatgaaagggttatcgttttctctgactttatg
ctggcaagagttgaaagagcctcagccttaactcaccatctgcccatttc
agacagaagcatgaagcaacagcagacacgtgcttagtatacgtcatgat
aaccaacccacctgggagactcaggaggagctagtctatcccattgagtt
tttttgccttcagtagtctccaagtataacctgattctctatgtaattat
acacctttatgcttttatcatagcaagagtgttttgatacatccttttaa
atttttttcttatttttcaccctaaagtaacaaaaataattctattttga
aatttaaagaataatataagtataaactcactgacctacttacaacatgt
gtgggaagttactgagtctctgggggaagcattagtggaagaataacaaa
cactcattctaaatgttttggatacttggatgatgttggaagagcctggg
atttgggatggcctgaaattagctttcagggtctccttacctagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_37696539_37697639
seq2: B6Ng01-081F07.b_43_1130 (reverse)

seq1  AAAAAAAAAAAAAAGAAGAAGAAGAAGAAGAAGGAAAGGAAACTTGAAAA  50
      ||||||||||||||| |||   |||||| |||||       || ||||| 
seq2  AAAAAAAAAAAAAAG-AGAGAGAGAAGACGAAGG-------ACCTGAAA-  41

seq1  TACACAAAGGCTCAGGCCATCTCCTGTGGCAATGCGGAATGCAGACTCTG  100
          | || ||||||||||||| ||||||| |||||| ||||||||||| 
seq2  ---TCCAAAGCTCAGGCCATCTTCTGTGGC-ATGCGG-ATGCAGACTCT-  85

seq1  GAGTTCC--TATAGGGACTC-AACTTTATCCTTCCAGTCATGTGTGCACT  147
      |||||||  ||||||||||| |||||||| ||||||||||||||||||||
seq2  GAGTTCCTATATAGGGACTCAAACTTTAT-CTTCCAGTCATGTGTGCACT  134

seq1  AGACAACCTGAAAAGGAAGAAGCAGAAGATGGGGAACCACAGCCAGACAC  197
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGACAACCTGAAAAGGAAGAAGCAGAAGAT-GGGAACCACAGCCAGACAC  183

seq1  CAAGAGGCATAACACCGATTCGGG-CCATGTTTTTTGTACCTAGAATATG  246
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAAGAGGCATAACACCGATTCGGGCCCATGTTTTTTGTACCTAGAATATG  233

seq1  AGTTCTTTGTAATAAGTCATCGGAGAAATGAGTACATTTGCCATGAAAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTGTAATAAGTCATCGGAGAAATGAGTACATTTGCCATGAAAAT  283

seq1  TTCCCACCTGCCTGCCCCATATTACAGAACTCATCCTTTGAGCACGGTTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACCTGCCTGCCCCATATTACAGAACTCATCCTTTGAGCACGGTTC  333

seq1  CTAGAAAACAACTTTGCTTGTGCGGATAAGGATATGAGGGTCAAGGGTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAACAACTTTGCTTGTGCGGATAAGGATATGAGGGTCAAGGGTGC  383

seq1  TCACTGCACAACATATAGAACAGCAAAAAACACCAGCCTGCCTAAATGTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCACAACATATAGAACAGCAAAAAACACCAGCCTGCCTAAATGTT  433

seq1  CCTCACAGGACAACAGAGAGATAGCAGAACAGAACATCATCTTTCTGAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGGACAACAGAGAGATAGCAGAACAGAACATCATCTTTCTGAAG  483

seq1  GTTAGCCAGCTCTTAAAAGATCGAAGTGAAAAAGACACACTGGCAAAGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCCAGCTCTTAAAAGATCGAAGTGAAAAAGACACACTGGCAAAGCT  533

seq1  CCTTAAATCAGTTCCAACAGGAAACATGAAAGGGAGAGGCATGCTCTATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATCAGTTCCAACAGGAAACATGAAAGGGAGAGGCATGCTCTATG  583

seq1  ATACAATGAAGATGAACACAACGCACTGTCCAGTTTGGTTTGTGTGGATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATGAAGATGAACACAACGCACTGTCCAGTTTGGTTTGTGTGGATG  633

seq1  CATGGAGACAAGTCAGAGAGCAGAGTGTGTCTGGCAGTAAAAACGGAAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGACAAGTCAGAGAGCAGAGTGTGTCTGGCAGTAAAAACGGAAGG  683

seq1  ATGCACATGAAAGAGAGAGTCACACACATTACAACCCAGCAGCTATTTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATGAAAGAGAGAGTCACACACATTACAACCCAGCAGCTATTTCT  733

seq1  GGAACACAACTTCATACATATTTCTATTGTTACTTTCTGTCCCAAAAATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACAACTTCATACATATTTCTATTGTTACTTTCTGTCCCAAAAATC  783

seq1  TGTTTTTATTCAGTACTTGTTTTATTTTATTTTAATTAATATAAAAAGGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATTCAGTACTTGTTTTATTTTATTTTAATTAATATAAAAAGGA  833

seq1  GAGAACATTAAAAGATGCATGTACTTTGTAAGGTCATTGAATGTCTTAGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATTAAAAGATGCATGTACTTTGTAAGGTCATTGAATGTCTTAGG  883

seq1  CATTCTATGGTAGATGAGAAGCTAAGAATACACATCTTCTAACTGAATTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTATGGTAGATGAGAAGCTAAGAATACACATCTTCTAACTGAATTC  933

seq1  CTAGAACCAAAGTTGCTGAAGATTATCCTTCTAGACTAGGATTCTGAAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACCAAAGTTGCTGAAGATTATCCTTCTAGACTAGGATTCTGAAGA  983

seq1  ACTGTTTGTCTTGTGTTAGGGGGAGAAAATGTCTTCTACACAAATATTGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTGTCTTGTGTTAGGGGGAGAAAATGTCTTCTACACAAATATTGC  1033

seq1  CTGAAAAAAAATGGAAGCCATTGCAAGAGTGGCTATACCCTCTTTGCCAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAAAAATGGAAGCCATTGCAAGAGTGGCTATACCCTCTTTGCCAG  1083

seq1  AATTC  1101
      |||||
seq2  AATTC  1088

seq1: chr11_37552509_37553612
seq2: B6Ng01-081F07.g_71_1167

seq1  GAATTCAATATTGGTTATATATGTTAAAATACTGAACCAATACAAGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATTGGTTATATATGTTAAAATACTGAACCAATACAAGAACT  50

seq1  CAGAACCAAGAAGATTATTAAGATAACTATACTAATAGTGTACACAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCAAGAAGATTATTAAGATAACTATACTAATAGTGTACACAATTC  100

seq1  AGGCACTAAAAATGGTCTGTGTAATGCTATGACAAGGAGTCACACTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTAAAAATGGTCTGTGTAATGCTATGACAAGGAGTCACACTTAAG  150

seq1  GCATTGTGATGTATTGTAAAGTGTCATCAGGAAGTTAATTAATCTATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTGATGTATTGTAAAGTGTCATCAGGAAGTTAATTAATCTATATT  200

seq1  AAACATGTCAAGATGTGCTATTAGATGACAGAACTAATCCATGGGAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTCAAGATGTGCTATTAGATGACAGAACTAATCCATGGGAGCCT  250

seq1  TACACATTGCATAAAATCTATCTACACACATACACGGCCTCAGGTTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATTGCATAAAATCTATCTACACACATACACGGCCTCAGGTTGATG  300

seq1  GAGGTTATGTTTTGGCATTTCTACGTTAACTTATACTTCCACTGCTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTATGTTTTGGCATTTCTACGTTAACTTATACTTCCACTGCTATCT  350

seq1  TTTAAAATGTCTCATAATATAAGAAGACATTTCTTTAGATGTGGAGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGTCTCATAATATAAGAAGACATTTCTTTAGATGTGGAGCAAA  400

seq1  GAAGGTTTGAAGAGATAAGACGAAGAGTTGTGTATATGTTGCTGACTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTTGAAGAGATAAGACGAAGAGTTGTGTATATGTTGCTGACTCTG  450

seq1  AAATGGAATTGTAAGTAGGCAAAATTTGAAATCACTGATTCTTATGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAATTGTAAGTAGGCAAAATTTGAAATCACTGATTCTTATGACAT  500

seq1  TTCAGTAGTTAGTAAGCTTTGTGAGTTTTGCCTATTTGTCCTGATTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAGTTAGTAAGCTTTGTGAGTTTTGCCTATTTGTCCTGATTGAGA  550

seq1  AGTCTCAACCCTTTACTAATGAAAGGGTTATCGTTTTCTCTGACTTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAACCCTTTACTAATGAAAGGGTTATCGTTTTCTCTGACTTTATG  600

seq1  CTGGCAAGAGTTGAAAGAGCCTCAGCCTTAACTCACCATCTGCCCATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAGAGTTGAAAGAGCCTCAGCCTTAACTCACCATCTGCCCATTTC  650

seq1  AGACAGAAGCATGAAGCAACAGCAGACACGTGCTTAGTATACGTCATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAGCATGAAGCAACAGCAGACACGTGCTTAGTATACGTCATGAT  700

seq1  AACCAACCCACCTGGGAGACTCAGGAGGAGCTAGTCTATCCCATTGAG-T  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AACCAACCCACCTGGGAGACTCAGGAGGAGCTAGTCTATCCCATTGAGTT  750

seq1  TTTTTGCCTTCAGTAGTCTCCAAGTATAACCTGATTCTCTATGTAATTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCTTCAGTAGTCTCCAAGTATAACCTGATTCTCTATGTAATTAT  800

seq1  ACACCTTTATGCTTTTATCATAGCAAGAGTGTTTTGATACATCCTTTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTATGCTTTTATCATAGCAAGAGTGTTTTGATACATCCTTTTAA  850

seq1  ATTTTTTTCTTATTTTTCACCCTAAAGTAACAAAAATAATTCTATTTTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCTTATTTTTCACCCTAAAGTAACAAAAATAATTCTATTTTGA  900

seq1  AATTTAAAGAATAATATAAGTATAAACTCACTGACCTACTTACAACATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAGAATAATATAAGTATAAACTCACTGACCTACTTACAACATGT  950

seq1  GTGGGAAGTTACTGAGTCTCTGGGGGAAGCATCAGT-GAAGAATAACAAA  998
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  GTGGGAAGTTACTGAGTCTCTGGGGGAAGCATTAGTGGAAGAATAACAAA  1000

seq1  CACTCCAATTCTAATATGTTTATGGATACATGGATGATGTTGGAAAGAGC  1048
      |||||  ||||||| |||||| ||||||| ||||||||||||| ||||||
seq2  CACTC--ATTCTAA-ATGTTT-TGGATACTTGGATGATGTTGG-AAGAGC  1045

seq1  CATGGGATTGGGAATGGCCATGAAATTAAGCTTTCAAGGGTCTCTTAATC  1098
      | ||||||| || |||||| ||||||| ||||||| |||||||| | | |
seq2  C-TGGGATTTGGGATGGCC-TGAAATT-AGCTTTC-AGGGTCTCCTTACC  1091

seq1  TAGAAT  1104
      ||||||
seq2  TAGAAT  1097