BAC Information

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BAC

Clone NameB6Ng01-081F12
Chromosome11 (Build37)
Map Location 69,230,994 - 69,368,391
singlet/doubletdoublet
Overlap geneDnahc2, Efnb3
Upstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3
Downstream geneWdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081F12.bB6Ng01-081F12.g
ACCDH896226DH896227
length637695
definitionDH896226|Mus musculus domesticus DNA, BAC clone: B6Ng01-081F12, 5' end.DH896227|Mus musculus domesticus DNA, BAC clone: B6Ng01-081F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,367,756 - 69,368,391)(69,230,994 - 69,231,687)
sequence
caagtggcttagtctggggaggtggcctgggtgggggtgggggcatggga
agtggatggttcttaccctgtggagaaaggggcaggaggaactccctgct
ttaggaggaagctggaacttaccactgtgagaggacagatgtggactgag
agttttcttagtgttcagtggcacttcccaaggaccccttcccttgtgct
ctgtgcagtttttaggacagctaagatgactgccacttgctgtggcaggc
ccaatttgtcttgttctccccttactgtaccccagtataatctctgttga
tcaacagaactaccccaagaacccacatgttctccccacctaaccagacg
gctgtctggctgatgccttcctcccttcaagcccaacacagcgcccttgt
cagtgaagaggtggtccatggactggtctagctgatggcagttattagca
ctggttgctgtttccatagtgacaagcctatacctcttcccgctctttta
gtgtgcagtgggctgctgcctcggtgttctcccgcctcagttttattaga
tcaaagctgcccttggccatcatgttggccacctcaatcaccagccaaaa
tggttgctttgtccaccagaggtcaagccatctctct
gaattctctcaagccagcaaaggggcaaagtctttcaggccacaccacac
ccgcgcccctcccccttcacgaaactccaggccagggtttcccacctgca
ggatgctaatgccaagggaaaggaaaggagaaagagatggcacgggactg
gaacgggactctgggcagaggtgggagggaatggaaaggggaggagatcg
cattgcctggcaaccgtcccggggcacgtgcactggtgacatcatcccag
gccacctcgaacacagacctttgactcctaccagggcgaagaagctgcta
gctggctaaatttcctgagaaaatagctttaggaattctgggaacccaaa
aaggagacgaaggagggaacccaggcgtcctgcttttatctctgttaacc
ccagcagaaccaatcctagggaatccggtcattcgcctgcctcctcctct
cagcctccagccttgacctcccaacccacatttctgactgtcccgacacg
cccctcggaaatactgtgccttctttcttctgggcttgatcccgggttag
gggcgggagactaagggacggggcaccaaccaagtcccgcgggactccgt
ctgctatctgcaggatccctttgtgccccagctggccgccagccggaatc
tgtctgggtccccaactctcccgcccctcccgcgccgttccaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_69367756_69368391
seq2: B6Ng01-081F12.b_42_678 (reverse)

seq1  AGAGAGATGGCTTGACCTCTGGTGGACAAAGCAACCATTTTGGCTGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATGGCTTGACCTCTGGTGGACAAAGCAACCATTTTGGCTGGTGA  50

seq1  TTGAGGTGGCCAACATGATGGCCAAGGGCAGCTTTGATCTAATAAAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTGGCCAACATGATGGCCAAGGGCAGCTTTGATCTAATAAAACTG  100

seq1  AGGCGGGAGAACACCGAGGCAGCAGCCCACTGCACACT-AAAGAGCGGGA  149
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGCGGGAGAACACCGAGGCAGCAGCCCACTGCACACTAAAAGAGCGGGA  150

seq1  AGAGGTATAGGCTTGTCACTATGGAAACAGCAACCAGTGCTAATAACTGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTATAGGCTTGTCACTATGGAAACAGCAACCAGTGCTAATAACTGC  200

seq1  CATCAGCTAGACCAGTCCATGGACCACCTCTTCACTGACAAGGGCGCTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCTAGACCAGTCCATGGACCACCTCTTCACTGACAAGGGCGCTGT  250

seq1  GTTGGGCTTGAAGGGAGGAAGGCATCAGCCAGACAGCCGTCTGGTTAGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGCTTGAAGGGAGGAAGGCATCAGCCAGACAGCCGTCTGGTTAGGT  300

seq1  GGGGAGAACATGTGGGTTCTTGGGGTAGTTCTGTTGATCAACAGAGATTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAACATGTGGGTTCTTGGGGTAGTTCTGTTGATCAACAGAGATTA  350

seq1  TACTGGGGTACAGTAAGGGGAGAACAAGACAAATTGGGCCTGCCACAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGGTACAGTAAGGGGAGAACAAGACAAATTGGGCCTGCCACAGCA  400

seq1  AGTGGCAGTCATCTTAGCTGTCCTAAAAACTGCACAGAGCACAAGGGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAGTCATCTTAGCTGTCCTAAAAACTGCACAGAGCACAAGGGAAG  450

seq1  GGGTCCTTGGGAAGTGCCACTGAACACTAAGAAAACTCTCAGTCCACATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTTGGGAAGTGCCACTGAACACTAAGAAAACTCTCAGTCCACATC  500

seq1  TGTCCTCTCACAGTGGTAAGTTCCAGCTTCCTCCTAAAGCAGGGAGTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTCACAGTGGTAAGTTCCAGCTTCCTCCTAAAGCAGGGAGTTCC  550

seq1  TCCTGCCCCTTTCTCCACAGGGTAAGAACCATCCACTTCCCATGCCCCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCCTTTCTCCACAGGGTAAGAACCATCCACTTCCCATGCCCCCA  600

seq1  CCCCCACCCAGGCCACCTCCCCAGACTAAGCCACTTG  636
      |||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCAGGCCACCTCCCCAGACTAAGCCACTTG  637

seq1: chr11_69230994_69231687
seq2: B6Ng01-081F12.g_70_764

seq1  GAATTCTCTCAAGCCAGCAAAGGGGCAAAGTCTTTCAGGCCACACCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAAGCCAGCAAAGGGGCAAAGTCTTTCAGGCCACACCACAC  50

seq1  CCGCGCCCCTCCCCCTTCACGAAACTCCAGGCCAGGGTTTCCCACCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGCCCCTCCCCCTTCACGAAACTCCAGGCCAGGGTTTCCCACCTGCA  100

seq1  GGATGCTAATGCCAAGGGAAAGGAAAGGAGAAAGAGATGGCACGGGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTAATGCCAAGGGAAAGGAAAGGAGAAAGAGATGGCACGGGACTG  150

seq1  GAACGGGACTCTGGGCAGAGGTGGGAGGGAATGGAAAGGGGAGGAGATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGGACTCTGGGCAGAGGTGGGAGGGAATGGAAAGGGGAGGAGATCG  200

seq1  CATTGCCTGGCAACCGTCCCGGGGCACGTGCACTGGTGACATCATCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCTGGCAACCGTCCCGGGGCACGTGCACTGGTGACATCATCCCAG  250

seq1  GCCACCTCGAACACAGACCTTTGACTCCTACCAGGGCGAAGAAGCTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTCGAACACAGACCTTTGACTCCTACCAGGGCGAAGAAGCTGCTA  300

seq1  GCTGGCTAAATTTCCTGAGAAAATAGCTTTAGGAATTCTGGGAACCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTAAATTTCCTGAGAAAATAGCTTTAGGAATTCTGGGAACCCAAA  350

seq1  AAGGAGACGAAGGAGGGAACCCAGGCGTCCTGCTTTTATCTCTGTTAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGACGAAGGAGGGAACCCAGGCGTCCTGCTTTTATCTCTGTTAACC  400

seq1  CCAGCAGAACCAATCCTAGGGAATCCGGTCATTCGCCTGCCTCCTCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGAACCAATCCTAGGGAATCCGGTCATTCGCCTGCCTCCTCCTCT  450

seq1  CAGCCTCCAGCCTTGACCTCCCAACCCACATTTCTGACTGTCCCGACACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCAGCCTTGACCTCCCAACCCACATTTCTGACTGTCCCGACACG  500

seq1  CCCCTCGGAAATACTGTGCCTTCTTTCTTCTGGGCTTGATCCCGGGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCGGAAATACTGTGCCTTCTTTCTTCTGGGCTTGATCCCGGGTTAG  550

seq1  GGGCGGGAGACTAAGGGACGGGGCACCAACCAAGTCCCGCGGGACTCCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGGAGACTAAGGGACGGGGCACCAACCAAGTCCCGCGGGACTCCGT  600

seq1  CTGCTATCTGCAGGATCCC-TTGTGCCCCAGCTGGCCGCCAGCCGGAATC  649
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGCTATCTGCAGGATCCCTTTGTGCCCCAGCTGGCCGCCAGCCGGAATC  650

seq1  TGTCTGGGTCCCCAACTCTCCCGCCCCTCCCGCGCCGTTCCAGGG  694
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGGTCCCCAACTCTCCCGCCCCTCCCGCGCCGTTCCAGGG  695