BAC Information

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BAC

Clone NameB6Ng01-081H12
Chromosome11 (Build37)
Map Location 48,367,059 - 48,368,189
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039647
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081H12.bB6Ng01-081H12.g
ACCDH896312DH896313
length1,1231,154
definitionDH896312|Mus musculus domesticus DNA, BAC clone: B6Ng01-081H12, 5' end.DH896313|Mus musculus domesticus DNA, BAC clone: B6Ng01-081H12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtgcctccccagatttccagaccgaacaatgttgctctgcgat
cagttgcttggactgcaataccagaacagctgagcttaatctcctttcac
tccttcgttcaacaggtatttgtagagctttgtgctgagtactgtgtggg
atacagagaagtgcaatttatagattttgccctttaagcttttattgctt
aatcacagtgagagggagtcaaagaggcacagtgtgaaaccgtagctcga
tggagactgaagtttcagttctagtggttgaagtttaggtaaaatcatat
gaaatatagaccatctctgagtcaagcaaatatcccacagtggagaagtc
attcatcctttcctgaaatagactgatgtgttcagcttaaagaagaagtt
ttctcatcatggtcaggatatatatttcctgtatgtgaaactgaaggtag
gaagaaacaggaatggctgagcctgctcctgaccctttcttcatagctcc
ctttctcacacaaggataatgggcagccatttattccttccttctacagt
cactggagcctcatttcaatggggtcgtatgaccctggaagggtatacat
aagaggcagcacttggccccttccccaaggagtacaagtagcaacagtac
agataatatggctcttgaggtagactagctggatttacattcagttccta
ctatcatgcaactactagacattggacacataacttcactgttgcatgtc
ttagtttcctagcctagaaagctgatgtaataatggcgagttaatgatct
aatctgttcaaatttcacagcaagcaccctgctagccacacaataactat
actagctgttatcatgaacagtccatagatgaccaggtgagtgctatgtt
cagaatgtgtgtcccttcttctatgctcatgcgttgaaaccctcttatct
aaaatatggtattagtgggtggcactttgggagggaaatagattataaga
gaagtcttataatgagatggtgagatgagacttccctaagatagtcctat
agaaacaatttgacttctactatttaatgttagaagtacaagggatgccc
aatgctcacgaaagtgctttcac
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcataccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccagagctaaaggatctgcaccctatag
gtggatcacatatgaactaccagtaccccggagcctctgactctagctgc
aatttatcaaaatggctagtcgccatcactggaaagagaggcccactgga
cttgcaactatatgcccagtacaggaaccaggccaaaagggaattggttg
ccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_48367059_48368189
seq2: B6Ng01-081H12.b_48_1170 (reverse)

seq1  GTGAAAGCCACCTTCGTGAGCA-TAGGCATCACCTTGTAACTCTGACATT  49
      ||||||| ||| |||||||||| | |||||| |||||||  ||| |||||
seq2  GTGAAAG-CACTTTCGTGAGCATTGGGCATC-CCTTGTACTTCTAACATT  48

seq1  AAATAGTAGAAGGTCAAATTGTCTCTATTAGGACTATCTTTAGGGAAGTT  99
      ||||||||||| |||||||||| |||| |||||||||| ||||||||| |
seq2  AAATAGTAGAA-GTCAAATTGTTTCTA-TAGGACTATC-TTAGGGAAG-T  94

seq1  CTCATCTCACCATCTCATTTATAAGACTTCTCCTTATAATCTATTTCCCT  149
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  CTCATCTCACCATCTCA-TTATAAGACTTCT-CTTATAATCTATTTCCCT  142

seq1  CCCAAAGTTGCCACCCACTAATACCATAATTTTAGATAAGAGGGTTTCAA  199
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  CCCAAAG-TGCCACCCACTAATACCAT-ATTTTAGATAAGAGGGTTTCAA  190

seq1  CGCATGAGCATAGAAGAAGGGACACACATTCTGAACATAGCACTCACCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGAGCATAGAAGAAGGGACACACATTCTGAACATAGCACTCACCTG  240

seq1  GTCATCTATGGACTGTTCATGATAACAGCTAGTATAGTTATTGTGTGGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTATGGACTGTTCATGATAACAGCTAGTATAGTTATTGTGTGGCT  290

seq1  AGCAGGGTGCTTGCTGTGAAATTTGAACAGATTAGATCATTAACTCGCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGTGCTTGCTGTGAAATTTGAACAGATTAGATCATTAACTCGCCA  340

seq1  TTATTACATCAGCTTTCTAGGCTAGGAAACTAAGACATGCAACAGTGAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACATCAGCTTTCTAGGCTAGGAAACTAAGACATGCAACAGTGAAG  390

seq1  TTATGTGTCCAATGTCTAGTAGTTGCATGATAGTAGGAACTGAATGTAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTCCAATGTCTAGTAGTTGCATGATAGTAGGAACTGAATGTAAA  440

seq1  TCCAGCTAGTCTACCTCAAGAGCCATATTATCTGTACTGTTGCTACTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTAGTCTACCTCAAGAGCCATATTATCTGTACTGTTGCTACTTGT  490

seq1  ACTCCTTGGGGAAGGGGCCAAGTGCTGCCTCTTATGTATACCCTTCCAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTGGGGAAGGGGCCAAGTGCTGCCTCTTATGTATACCCTTCCAGG  540

seq1  GTCATACGACCCCATTGAAATGAGGCTCCAGTGACTGTAGAAGGAAGGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATACGACCCCATTGAAATGAGGCTCCAGTGACTGTAGAAGGAAGGAA  590

seq1  TAAATGGCTGCCCATTATCCTTGTGTGAGAAAGGGAGCTATGAAGAAAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGCTGCCCATTATCCTTGTGTGAGAAAGGGAGCTATGAAGAAAGG  640

seq1  GTCAGGAGCAGGCTCAGCCATTCCTGTTTCTTCCTACCTTCAGTTTCACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAGCAGGCTCAGCCATTCCTGTTTCTTCCTACCTTCAGTTTCACA  690

seq1  TACAGGAAATATATATCCTGACCATGATGAGAAAACTTCTTCTTTAAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAAATATATATCCTGACCATGATGAGAAAACTTCTTCTTTAAGCT  740

seq1  GAACACATCAGTCTATTTCAGGAAAGGATGAATGACTTCTCCACTGTGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACATCAGTCTATTTCAGGAAAGGATGAATGACTTCTCCACTGTGGG  790

seq1  ATATTTGCTTGACTCAGAGATGGTCTATATTTCATATGATTTTACCTAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCTTGACTCAGAGATGGTCTATATTTCATATGATTTTACCTAAA  840

seq1  CTTCAACCACTAGAACTGAAACTTCAGTCTCCATCGAGCTACGGTTTCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACCACTAGAACTGAAACTTCAGTCTCCATCGAGCTACGGTTTCAC  890

seq1  ACTGTGCCTCTTTGACTCCCTCTCACTGTGATTAAGCAATAAAAGCTTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCCTCTTTGACTCCCTCTCACTGTGATTAAGCAATAAAAGCTTAA  940

seq1  AGGGCAAAATCTATAAATTGCACTTCTCTGTATCCCACACAGTACTCAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAAAATCTATAAATTGCACTTCTCTGTATCCCACACAGTACTCAGC  990

seq1  ACAAAGCTCTACAAATACCTGTTGAACGAAGGAGTGAAAGGAGATTAAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTCTACAAATACCTGTTGAACGAAGGAGTGAAAGGAGATTAAGC  1040

seq1  TCAGCTGTTCTGGTATTGCAGTCCAAGCAACTGATCGCAGAGCAACATTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTTCTGGTATTGCAGTCCAAGCAACTGATCGCAGAGCAACATTG  1090

seq1  TTC-CTCTGGAAATCTGGGGAGGCACAGAATTC  1131
      |||  ||||||||||||||||||||||||||||
seq2  TTCGGTCTGGAAATCTGGGGAGGCACAGAATTC  1123