BAC Information

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BAC

Clone NameB6Ng01-081N19
Chromosome11 (Build37)
Map Location 81,172,451 - 81,308,484
singlet/doubletdoublet
Overlap geneAccn1
Upstream gene5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3
Downstream gene1700071K01Rik, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1, Tmem132e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081N19.bB6Ng01-081N19.g
ACCDH896587DH896588
length1,1911,156
definitionDH896587|Mus musculus domesticus DNA, BAC clone: B6Ng01-081N19, 5' end.DH896588|Mus musculus domesticus DNA, BAC clone: B6Ng01-081N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,307,295 - 81,308,484)(81,172,451 - 81,173,616)
sequence
gaattcctcagttgacgccttcacagctgcagagaggcattcggaagggt
gatcccccacaaatcctgactctgagaaagaaattgaggagagaggagag
ccaggcatctcccaaatggcccactggtttgccggctctgggagcagcca
gagtgagagggcttaatctttaggtgtgaggacaggtgggctggcacacg
gcaggataatgacaaggaggagaagaggttgtcttcactcttgcaggcac
ctcaggctgactcagaaagacaggcaacaagatgggatgttgatcttaat
gacccttcttaaatgttcaaactaccttgtaaccattaaaagaacagcca
gagatgcttgttgtagtagacactcaatttcaataggagtgttccaccct
ctcttaggtcattcaatttccaaataaaagacacaaagcctttgtactta
taataagcctctaaatcactcaagttaggcagatatctaccctctgagct
attagtgtcttcttccctatcaataactccaaattataaacttgtcatgt
tccatctgggctgctcttaactcctattgtccagccctcatggccatgtt
ttcatgactcacaaacctcatggtgtcttctcctctctccaccttctccc
cctttttgtggtctcctccaacaccaaacccaggaaccaaaacaccacct
accctgacataagctatcagcatctttatttaaccaatagttttaaatta
aggagcaaggtcacatagcatcacttggtgtacctgaagcttctcttgtc
catggaggcaatcagggccagtatttagcattacaacacataccaactga
ccgcaacagatgtacaaagcacggctgtgtcccaagattcagaagactgc
tgcacaagccacatggtgagagcttttctctcagttaaaaaaaagaaaga
caaagaaaaaaaagttcaacaagaaaacaaaacagatgtactggctggtc
tgtggtgtcaacttgacaccagctggagtttatcacagaagaaaggagcc
tcccctcgaggaaatgcctccataatttccagcctgtaagcattttctca
attacttgatcaaggaatggaaggatccattgggtgggtggtgccatcct
tgggatgaatttcctgggttttaacaagaagccagctgagc
gaattcagtgagtctttggaatctgataatccacaggactactttggtaa
tccagttttgggtatggaagaagcccatggatctgaactccaaccgagtc
ctgcatgaaccagaatctccagggcaattcctgaaccttacaatcccagt
ggggtccatcaaggttgaagtacaagccaatctcaatatctgggcaataa
gtgtgttgctaatggcacatgatgttgactaatgaaaaacaattttctac
acctagaaagtatcccagaagctttgaaaactcattgtcctggagtcttg
ctagcatagtgctgttcttcatctatctcattctgctgcccgagcttcag
aatgcagagacaatggaaaacacagagacgtgaactagaaaatatcagtg
ccagagggtagcttccaggaccctctttccaggtcccctaccttgctttg
attccttttttcacacataaagaagctgctaccagaaaaagaaagtgact
tgcctgaagccacacagcagataaatgacagcattgaaattggtccaggc
aagaagtggatacgcgctttctgaaaaaggtactggtatcagactttggt
ctgttgggatgggcaaggctgtgtgggagacaaggtgctcgatgttacgc
ctaggtgagcatgttatagatgagcgagtagaggctttgaagagtcctgc
agtcagcattcgcattgcatgctgtttcccaccatcacacttgaagtcca
tccacctggcaaatgtttcctctctttttgtaaaaggccatccaaaagaa
ggagttcaacaaaatacccatggaaggagttacagagacaaagtttggag
caaagacaaaaggatggaccatccagagactaccccaccggggcatccat
tccataatcagccaccaaacccagacactattgcatttgccagcagattt
tgctgaagggacccttaatatagctgtctctttgtgaggctatgccagtg
cctgcaaatacagatgtattatgcctcacagtcatctatagaatgaacca
ggtccctatggaggaactagagaaagtacttaaggatcgaaggtctgcaa
ccataagttgaacaaccatatggacttacgttaccctaagctgttctcta
gctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_81307295_81308484
seq2: B6Ng01-081N19.b_49_1239 (reverse)

seq1  GCTCAGCTTGCTTTCTTG-TAAAACCCAGGGATATCATCCCAGGGATGGC  49
      |||||||| || |||||| ||||||||||| |  |||||||| |||||||
seq2  GCTCAGCTGGC-TTCTTGTTAAAACCCAGGAAATTCATCCCAAGGATGGC  49

seq1  ACCACCCA--CAATGGATCCTCCCA-TCCTTGATC-AGTAATTGAGAAAA  95
      ||||||||  ||||||||||| ||| ||||||||| ||||||||||||||
seq2  ACCACCCACCCAATGGATCCTTCCATTCCTTGATCAAGTAATTGAGAAAA  99

seq1  TGCCTTACA-GCTGGATATTATGGAGGCATTTCCTCGA-GGGAGGCTCCT  143
      || |||||| |||||| ||||||||||||||||||||| |||||||||||
seq2  TG-CTTACAGGCTGGAAATTATGGAGGCATTTCCTCGAGGGGAGGCTCCT  148

seq1  TTC-TCTGTGAT-AACTCCAGCTTGTGTCAAGTTGACACACAAGACCAGC  191
      ||| |||||||| |||||||||| |||||||||||||||   ||||||||
seq2  TTCTTCTGTGATAAACTCCAGCTGGTGTCAAGTTGACACCACAGACCAGC  198

seq1  CAGTACATCTTGTTTTGTTTTCTTGTTTGAACTTTTTTTTCTTTGTTCTT  241
      ||||||||| ||||||||||||||| ||||||||||||||||||| ||||
seq2  CAGTACATC-TGTTTTGTTTTCTTG-TTGAACTTTTTTTTCTTTG-TCTT  245

seq1  TTCTTTTTTTTTAACTGAGAGAAAAGCTCTCACCATGTGGCTTTGTGCAG  291
      |   ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  T--CTTTTTTTTAACTGAGAGAAAAGCTCTCACCATGTGGC-TTGTGCAG  292

seq1  CAGTCTTCTGAATCTTGGGACACAGCCGTGCTTTGTACATCTGTTGCGGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCTGAATCTTGGGACACAGCCGTGCTTTGTACATCTGTTGCGGT  342

seq1  CAGTTGGTATGTGTTGTAATGCTAAATACTGGCCCTGATTGCCTCCATGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGTATGTGTTGTAATGCTAAATACTGGCCCTGATTGCCTCCATGG  392

seq1  ACAAGAGAAGCTTCAGGTACACCAAGTGATGCTATGTGACCTTGCTCCTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGAAGCTTCAGGTACACCAAGTGATGCTATGTGACCTTGCTCCTT  442

seq1  AATTTAAAACTATTGGTTAAATAAAGATGCTGATAGCTTATGTCAGGGTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAACTATTGGTTAAATAAAGATGCTGATAGCTTATGTCAGGGTA  492

seq1  GGTGGTGTTTTGGTTCCTGGGTTTGGTGTTGGAGGAGACCACAAAAAGGG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGTTTTGGTTCCTGGGTTTGGTGTTGGAGGAGACCACAAAAAGGG  542

seq1  GGAGAAGGTGGAGAGAGGAGAAGACACCATGAGGTTTGTGAGTCATGAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGTGGAGAGAGGAGAAGACACCATGAGGTTTGTGAGTCATGAAA  592

seq1  ACATGGCCATGAGGGCTGGACAATAGGAGTTAAGAGCAGCCCAGATGGAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCCATGAGGGCTGGACAATAGGAGTTAAGAGCAGCCCAGATGGAA  642

seq1  CATGACAAGTTTATAATTTGGAGTTATTGATAGGGAAGAAGACACTAATA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAAGTTTATAATTTGGAGTTATTGATAGGGAAGAAGACACTAATA  692

seq1  GCTCAGAGGGTAGATATCTGCCTAACTTGAGTGATTTAGAGGCTTATTAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGGGTAGATATCTGCCTAACTTGAGTGATTTAGAGGCTTATTAT  742

seq1  AAGTACAAAGGCTTTGTGTCTTTTATTTGGAAATTGAATGACCTAAGAGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAAAGGCTTTGTGTCTTTTATTTGGAAATTGAATGACCTAAGAGA  792

seq1  GGGTGGAACACTCCTATTGAAATTGAGTGTCTACTACAACAAGCATCTCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAACACTCCTATTGAAATTGAGTGTCTACTACAACAAGCATCTCT  842

seq1  GGCTGTTCTTTTAATGGTTACAAGGTAGTTTGAACATTTAAGAAGGGTCA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTCTTTTAATGGTTACAAGGTAGTTTGAACATTTAAGAAGGGTCA  892

seq1  TTAAGATCAACATCCCATCTTGTTGCCTGTCTTTCTGAGTCAGCCTGAGG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATCAACATCCCATCTTGTTGCCTGTCTTTCTGAGTCAGCCTGAGG  942

seq1  TGCCTGCAAGAGTGAAGACAACCTCTTCTCCTCCTTGTCATTATCCTGCC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCAAGAGTGAAGACAACCTCTTCTCCTCCTTGTCATTATCCTGCC  992

seq1  GTGTGCCAGCCCACCTGTCCTCACACCTAAAGATTAAGCCCTCTCACTCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCAGCCCACCTGTCCTCACACCTAAAGATTAAGCCCTCTCACTCT  1042

seq1  GGCTGCTCCCAGAGCCGGCAAACCAGTGGGCCATTTGGGAGATGCCTGGC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTCCCAGAGCCGGCAAACCAGTGGGCCATTTGGGAGATGCCTGGC  1092

seq1  TCTCCTCTCTCCTCAATTTCTTTCTCAGAGTCAGGATTTGTGGGGGATCA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTCTCCTCAATTTCTTTCTCAGAGTCAGGATTTGTGGGGGATCA  1142

seq1  CCCTTCCGAATGCCTCTCTGCAGCTGTGAAGGCGTCAACTGAGGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCGAATGCCTCTCTGCAGCTGTGAAGGCGTCAACTGAGGAATTC  1191

seq1: chr11_81172451_81173616
seq2: B6Ng01-081N19.g_70_1225

seq1  GAATTCAGTGAGTCTTTGGAATCTGATAATCCACAGGACTACTTTGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAGTCTTTGGAATCTGATAATCCACAGGACTACTTTGGTAA  50

seq1  TCCAGTTTTGGGTATGGAAGAAGCCCATGGATCTGAACTCCAACCGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTTGGGTATGGAAGAAGCCCATGGATCTGAACTCCAACCGAGTC  100

seq1  CTGCATGAACCAGAATCTCCAGGGCAATTCCTGAACCTTACAATCCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGAACCAGAATCTCCAGGGCAATTCCTGAACCTTACAATCCCAGT  150

seq1  GGGGTCCATCAAGGTTGAAGTACAAGCCAATCTCAATATCTGGGCAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCATCAAGGTTGAAGTACAAGCCAATCTCAATATCTGGGCAATAA  200

seq1  GTGTGTTGCTAATGGCACATGATGTTGACTAATGAAAAACAATTTTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGCTAATGGCACATGATGTTGACTAATGAAAAACAATTTTCTAC  250

seq1  ACCTAGAAAGTATCCCAGAAGCTTTGAAAACTCATTGTCCTGGAGTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAAAGTATCCCAGAAGCTTTGAAAACTCATTGTCCTGGAGTCTTG  300

seq1  CTAGCATAGTGCTGTTCTTCATCTATCTCATTCTGCTGCCCGAGCTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATAGTGCTGTTCTTCATCTATCTCATTCTGCTGCCCGAGCTTCAG  350

seq1  AATGCAGAGACAATGGAAAACACAGAGACGTGAACTAGAAAATATCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGAGACAATGGAAAACACAGAGACGTGAACTAGAAAATATCAGTG  400

seq1  CCAGAGGGTAGCTTCCAGGACCCTCTTTCCAGGTCCCCTACCTTGCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGGTAGCTTCCAGGACCCTCTTTCCAGGTCCCCTACCTTGCTTTG  450

seq1  ATTCCTTTTTTCACACATAAAGAAGCTGCTACCAGAAAAAGAAAGTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTTTTCACACATAAAGAAGCTGCTACCAGAAAAAGAAAGTGACT  500

seq1  TGCCTGAAGCCACACAGCAGATAAATGACAGCATTGAAATTGGTCCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAAGCCACACAGCAGATAAATGACAGCATTGAAATTGGTCCAGGC  550

seq1  AAGAAGTGGATACGCGCTTTCTGAAAAAGGTACTGGTATCAGACTTTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGGATACGCGCTTTCTGAAAAAGGTACTGGTATCAGACTTTGGT  600

seq1  CTGTTGGGATGGGCAAGGCTGTGTGGGAGACAAGGTGCTCGATGTTACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGGATGGGCAAGGCTGTGTGGGAGACAAGGTGCTCGATGTTACGC  650

seq1  CTAGGTGAGCATGTTATAGATGAGCGAGTAGAGGCTTTGAAGAGTCCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGAGCATGTTATAGATGAGCGAGTAGAGGCTTTGAAGAGTCCTGC  700

seq1  AGTCAGCATTCGCATTGCATGCTG-TTCCCACCATCACACTTGAAGTCCA  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTCAGCATTCGCATTGCATGCTGTTTCCCACCATCACACTTGAAGTCCA  750

seq1  TCCACCTGGCAAATGTTTCCTCTCTTTTTGTAAAAGGCCATCCAAAAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGGCAAATGTTTCCTCTCTTTTTGTAAAAGGCCATCCAAAAGAA  800

seq1  GGAGTTCAACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCAACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAG  850

seq1  CAAAGACAAAAGGATGGACCATCCAGAGACTACCCCACCGGGGCATCCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAAAAGGATGGACCATCCAGAGACTACCCCACCGGGGCATCCAT  900

seq1  TCCATAATCAGCCACCAAACCCAGACACTATTGCATTTGCCAGCAAGATT  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCCATAATCAGCCACCAAACCCAGACACTATTGCATTTGCCAGC-AGATT  949

seq1  TTGCTGAAGGGACCC-TAATATAGCTGTCTC-TTGTGAGGCTATGCCAGT  997
      ||||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  TTGCTGAAGGGACCCTTAATATAGCTGTCTCTTTGTGAGGCTATGCCAGT  999

seq1  GCCTGGCAAATACAGATGTA-TATG-CTCACAGTCATCTATAGGATGGAA  1045
      |||| ||||||||||||||| |||| ||||||||||||||||| || |||
seq2  GCCT-GCAAATACAGATGTATTATGCCTCACAGTCATCTATAGAAT-GAA  1047

seq1  CACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACTCAAGGAGCCGAAGG  1095
      | ||||   ||| |||||||| |||||||||||||| |||||  ||||  
seq2  C-CAGG--TCCCTATGGAGGAACTAGAGAAAGTACTTAAGGA-TCGAA--  1091

seq1  GGTCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCC  1145
      |||||||||||  ||| || ||||||| ||||| ||| ||  ||  ||| 
seq2  GGTCTGCAACC--ATAAGTTGAACAACCATATGGACTTAC--GTTACCCT  1137

seq1  AGAGCTGTGTCTCTAGCTGCA  1166
      | |||||| ||||||||||||
seq2  A-AGCTGT-TCTCTAGCTGCA  1156