BAC Information

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BAC

Clone NameB6Ng01-082C06
Chromosome11 (Build37)
Map Location 100,005,233 - 100,187,235
singlet/doubletdoublet
Overlap geneKrt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1
Upstream geneCcr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15
Downstream geneGast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082C06.bB6Ng01-082C06.g
ACCDH896786DH896787
length972222
definitionDH896786|Mus musculus domesticus DNA, BAC clone: B6Ng01-082C06, 5' end.DH896787|Mus musculus domesticus DNA, BAC clone: B6Ng01-082C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,186,259 - 100,187,235)(100,005,233 - 100,005,454)
sequence
gaattccaggacagccgggctcacacagagaaaccctttcttgaaaaact
ttagaggcaggatggagagatggctcagtggttaagagcattgactgttc
ttccagaggtcctgagttcaattcccagcaaccacatggtggctcacaac
catcggtaatgagacctggtgccctcttatggtgtgcatgcaggcagaac
attgtatatatagtaaatcaacattaaaaaaaatcttttctgaagagagt
gacagtgtacatacataaaataaataaatcttaaaataaaaattaaaaaa
aaactttagagacagggtcctactctattgctcaaaatggcactaaactc
ctctatggccttggcctcctcagtgctgggactacagacttgcattacta
aactcagctagtgccttaaaaataaaacaaaaaccccagcttgcagatca
cagcaggtagtctgctaatcatatgctctaaacgtgtgtcaaaagcctta
ttaaataaacgttgataagataacattgactcagtggggccggttgaggc
ctgaaggtttgtgggtctaacaagctgcgtggggctgagcagcagctcta
aaatgctgtctccaaggtgaagggagagctatcctacgtcatcagctcgc
tcagtgtgcagcctttgcgtcgcttgcttcctcttgtctcacaggaaccg
agaatcaatggcttgatacacagagtggctgtcacatgaatgccccatct
taacttttaatttttcatcgtcttcctgtttttgaccaatcgttcctgat
gggcacaaatgaaccatatagaaatgattaaagacaatgtcagcttctgt
gatctggcctgccatggctggttgattgtcttagcacagtatccgtggag
aaggacatgggatttggctcacttgtgaggtcctctctccaataccactt
ggttttgatgggggattgatat
acagagatccaccttctctgcctccccaagtgctgggattaaaggtgtgt
gccactgcgccccagctctggtttgacattttgagacagagtctcactgt
atggttcaactggcattaacttcatcgtccttctttctgcctcagtttct
caatgctggataagccaccacgtatcagccaccacgctcagctacataga
tagtttgggggtggggggttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_100186259_100187235
seq2: B6Ng01-082C06.b_44_1015 (reverse)

seq1  ATATCACTCCCCCATCAAAACCAAGTGTGTATTGGGAGAGAGGACCTCAC  50
      |||||| |||||||||||||||||||| ||||| ||||||||||||||||
seq2  ATATCAATCCCCCATCAAAACCAAGTG-GTATT-GGAGAGAGGACCTCAC  48

seq1  AATGTGAGCCAAATCCCATGTCCCTTCTCCACGGATACTGTTGCTAAGAC  100
      || |||||||||||||||||| |||||||||||||||||| |||||||||
seq2  AA-GTGAGCCAAATCCCATGT-CCTTCTCCACGGATACTG-TGCTAAGAC  95

seq1  ATTCAACCAGCCATGGCAGGCCAGATCACAGAAGCTGACATTGTCTTTAA  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACCAGCCATGGCAGGCCAGATCACAGAAGCTGACATTGTCTTTAA  145

seq1  TCATTTCTATATGGTTCATTTGTGCCCATCAGGAACGATTGGTCAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTATATGGTTCATTTGTGCCCATCAGGAACGATTGGTCAAAAAC  195

seq1  AGGAAGACGATGAAAAATTAAAAGTTAAGATGGGGCATTCATGTGACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACGATGAAAAATTAAAAGTTAAGATGGGGCATTCATGTGACAGC  245

seq1  CACTCTGTGTATCAAGCCATTGATTCTCGGTTCCTGTGAGACAAGAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTGTATCAAGCCATTGATTCTCGGTTCCTGTGAGACAAGAGGAA  295

seq1  GCAAGCGACGCAAAGGCTGCACACTGAGCGAGCTGATGACGTAGGATAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCGACGCAAAGGCTGCACACTGAGCGAGCTGATGACGTAGGATAGC  345

seq1  TCTCCCTTCACCTTGGAGACAGCATTTTAGAGCTGCTGCTCAGCCCCACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTCACCTTGGAGACAGCATTTTAGAGCTGCTGCTCAGCCCCACG  395

seq1  CAGCTTGTTAGACCCACAAACCTTCAGGCCTCAACCGGCCCCACTGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGTTAGACCCACAAACCTTCAGGCCTCAACCGGCCCCACTGAGTC  445

seq1  AATGTTATCTTATCAACGTTTATTTAATAAGGCTTTTGACACACGTTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATCTTATCAACGTTTATTTAATAAGGCTTTTGACACACGTTTAG  495

seq1  AGCATATGATTAGCAGACTACCTGCTGTGATCTGCAAGCTGGGGTTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATGATTAGCAGACTACCTGCTGTGATCTGCAAGCTGGGGTTTTTG  545

seq1  TTTTATTTTTAAGGCACTAGCTGAGTTTAGTAATGCAAGTCTGTAGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTAAGGCACTAGCTGAGTTTAGTAATGCAAGTCTGTAGTCCC  595

seq1  AGCACTGAGGAGGCCAAGGCCATAGAGGAGTTTAGTGCCATTTTGAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGAGGAGGCCAAGGCCATAGAGGAGTTTAGTGCCATTTTGAGCAA  645

seq1  TAGAGTAGGACCCTGTCTCTAAAGTTTTTTTTTAATTTTTATTTTAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTAGGACCCTGTCTCTAAAGTTTTTTTTTAATTTTTATTTTAAGAT  695

seq1  TTATTTATTTTATGTATGTACACTGTCACTCTCTTCAGAAAAGATTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTTATGTATGTACACTGTCACTCTCTTCAGAAAAGATTTTTT  745

seq1  TTAATGTTGATTTACTATATATACAATGTTCTGCCTGCATGCACACCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTGATTTACTATATATACAATGTTCTGCCTGCATGCACACCATA  795

seq1  AGAGGGCACCAGGTCTCATTACCGATGGTTGTGAGCCACCATGTGGTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCACCAGGTCTCATTACCGATGGTTGTGAGCCACCATGTGGTTGC  845

seq1  TGGGAATTGAACTCAGGACCTCTGGAAGAACAGTCAATGCTCTTAACCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTGAACTCAGGACCTCTGGAAGAACAGTCAATGCTCTTAACCAC  895

seq1  TGAGCCATCTCTCCATCCTGCCTCTAAAGTTTTTCAAGAAAGGGTTTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTCTCCATCCTGCCTCTAAAGTTTTTCAAGAAAGGGTTTCTC  945

seq1  TGTGTGAGCCCGGCTGTCCTGGAATTC  977
      |||||||||||||||||||||||||||
seq2  TGTGTGAGCCCGGCTGTCCTGGAATTC  972

seq1: chr11_100005233_100005454
seq2: B6Ng01-082C06.g_79_300

seq1  ACAGAGATCCACCTTCTCTGCCTCCCCAAGTGCTGGGATTAAAGGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATCCACCTTCTCTGCCTCCCCAAGTGCTGGGATTAAAGGTGTGT  50

seq1  GCCACTGCGCCCCAGCTCTGGTTTGACATTTTGAGACAGAGTCTCACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGCGCCCCAGCTCTGGTTTGACATTTTGAGACAGAGTCTCACTGT  100

seq1  ATGGTTCAACTGGCATTAACTTCATCGTCCTTCTTTCTGCCTCAGTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCAACTGGCATTAACTTCATCGTCCTTCTTTCTGCCTCAGTTTCT  150

seq1  CAATGCTGGATAAGCCACCACGTATCAGCCACCACGCTCAGCTACATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTGGATAAGCCACCACGTATCAGCCACCACGCTCAGCTACATAGA  200

seq1  TAGTTTGGGGGTGGGGGGTTGT  222
      ||||||||||||||||||||||
seq2  TAGTTTGGGGGTGGGGGGTTGT  222