BAC Information

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BAC

Clone NameB6Ng01-082C11
Chromosome11 (Build37)
Map Location 83,307,040 - 83,425,646
singlet/doubletdoublet
Overlap geneTaf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6
Upstream geneCct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28
Downstream geneLOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082C11.bB6Ng01-082C11.g
ACCDH896796DH896797
length286914
definitionDH896796|Mus musculus domesticus DNA, BAC clone: B6Ng01-082C11, 5' end.DH896797|Mus musculus domesticus DNA, BAC clone: B6Ng01-082C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,425,361 - 83,425,646)(83,307,040 - 83,307,937)
sequence
gaattctcttccttgtatttcccttttccttgtttttcaacttatctaac
atctattttgtaagtttcttactaggtgctgttctttatgtaagcacata
tttgtttacacaaatcatttcacatttgtttcgatgagaaaaaggaacac
ttttttaagactcaaatagtatacatggtcctaaacaggatgactagcac
atgtaagcaagtcttcagtaaattatatagaggatggatgggtgcttgga
tgaatggatggatggatgggtgcttggatggatgga
gaattcccttttaagagcaaggcagtgttcttaaccattgagttatcttt
tctgccaccaaaatttcctttatattgaatgtgtcttttctaagtatatt
atgacatcacattgaaacctccaggctaccctagagtcctcttttcattg
tggtttttgaatttggaagacccatatcttcataatcttttaagtttctt
tatgtggggatactgagccaattaagttgaacatacctatgtgtcttaaa
tatcccttaaaatgttcttggggagttctttatgtgtactttttgcttct
atgtctgggattgaaaacaaatttgcaacattttgacatagttgttgaaa
tattcttctgtcttaaattgctagcgaggccttaatatgtagaagaaatg
actttgacttaactgcaagtttgaaggagagactatccacaagaatatct
cccttactccttgaagtctatttctgtagttaatacagtaaatttcctaa
taaaggaattgtaatatagttaatataaagcttacttagggagtgagaat
gattgaatgacattttgaatgtacaggtaaacattaggatggtatttctt
tagacttaaatatatataatgtgttacatggggatcttactaaaatgcaa
attaccattttctgcgaaagctcttgggctatgttttatactttatactt
accctttgaatagtaaggggtataggactgagttttgtaaaaaaggaaac
tcagccttaatgttatatatcccttttagaggatgcatcttttaaaaata
cttttacttatgtgtatttatttttttgtaaatatttgccatgtggtggt
gcccacagacagaatagatatggattccttggagcttgaattgtaggcag
ttttattgcaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_83425361_83425646
seq2: B6Ng01-082C11.b_43_328 (reverse)

seq1  TCCATCCATCCAAGCACCCATCCATCCATCCATTCATCCAAGCACCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCATCCAAGCACCCATCCATCCATCCATTCATCCAAGCACCCATC  50

seq1  CATCCTCTATATAATTTACTGAAGACTTGCTTACATGTGCTAGTCATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTATATAATTTACTGAAGACTTGCTTACATGTGCTAGTCATCCT  100

seq1  GTTTAGGACCATGTATACTATTTGAGTCTTAAAAAAGTGTTCCTTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGACCATGTATACTATTTGAGTCTTAAAAAAGTGTTCCTTTTTCT  150

seq1  CATCGAAACAAATGTGAAATGATTTGTGTAAACAAATATGTGCTTACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGAAACAAATGTGAAATGATTTGTGTAAACAAATATGTGCTTACATA  200

seq1  AAGAACAGCACCTAGTAAGAAACTTACAAAATAGATGTTAGATAAGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGCACCTAGTAAGAAACTTACAAAATAGATGTTAGATAAGTTGA  250

seq1  AAAACAAGGAAAAGGGAAATACAAGGAAGAGAATTC  286
      ||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGGAAAAGGGAAATACAAGGAAGAGAATTC  286

seq1: chr11_83307040_83307937
seq2: B6Ng01-082C11.g_74_975

seq1  AAGAGCAAGGCAGTGTTCTTAACCATTGAGTTATCTTTTCTGCCACCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAAGGCAGTGTTCTTAACCATTGAGTTATCTTTTCTGCCACCAAA  50

seq1  ATTTCCTTTATATTGAATGTGTCTTTTCTAAGTATATTATGACATCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTTATATTGAATGTGTCTTTTCTAAGTATATTATGACATCACAT  100

seq1  TGAAACCTCCAGGCTACCCTAGAGTCCTCTTTTCATTGTGGTTTTTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCTCCAGGCTACCCTAGAGTCCTCTTTTCATTGTGGTTTTTGAAT  150

seq1  TTGGAAGACCCATATCTTCATAATCTTTTAAGTTTCTTTATGTGGGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGACCCATATCTTCATAATCTTTTAAGTTTCTTTATGTGGGGATA  200

seq1  CTGAGCCAATTAAGTTGAACATACCTATGTGTCTTAAATATCCCTTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCAATTAAGTTGAACATACCTATGTGTCTTAAATATCCCTTAAAA  250

seq1  TGTTCTTGGGGAGTTCTTTATGTGTACTTTTTGCTTCTATGTCTGGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGGGGAGTTCTTTATGTGTACTTTTTGCTTCTATGTCTGGGATT  300

seq1  GAAAACAAATTTGCAACATTTTGACATAGTTGTTGAAATATTCTTCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAATTTGCAACATTTTGACATAGTTGTTGAAATATTCTTCTGTC  350

seq1  TTAAATTGCTAGCGAGGCCTTAATATGTAGAAGAAATGACTTTGACTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGCTAGCGAGGCCTTAATATGTAGAAGAAATGACTTTGACTTAA  400

seq1  CTGCAAGTTTGAAGGAGAGACTATCCACAAGAATATCTCCCTTACTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGTTTGAAGGAGAGACTATCCACAAGAATATCTCCCTTACTCCTT  450

seq1  GAAGTCTATTTCTGTAGTTAATACAGTAAATTTCCTAATAAAGGAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTATTTCTGTAGTTAATACAGTAAATTTCCTAATAAAGGAATTGT  500

seq1  AATATAGTTAATATAAAGCTTACTTAGGGAGTGAGAATGATTGAATGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGTTAATATAAAGCTTACTTAGGGAGTGAGAATGATTGAATGACA  550

seq1  -TTTGAATGTACAGGTAAACATTAGGATGGTATTTC-TTAGACTTAAATA  598
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTTGAATGTACAGGTAAACATTAGGATGGTATTTCTTTAGACTTAAATA  600

seq1  TATATAATGTGTTACATGGGGATCTTACTAAAATGCAAATTACCATTTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATGTGTTACATGGGGATCTTACTAAAATGCAAATTACCATTTTC  650

seq1  TGCG-AAGCTCTTGGGCTATG-TTTATAC-TTATACTTACCCTTTGAATA  695
      |||| |||||||||||||||| ||||||| ||||||||||||||||||||
seq2  TGCGAAAGCTCTTGGGCTATGTTTTATACTTTATACTTACCCTTTGAATA  700

seq1  GTAA-GGGTATAGGACTGAGTTTTGTAAAAAAGGAAACTCAGCCTTAATG  744
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGGTATAGGACTGAGTTTTGTAAAAAAGGAAACTCAGCCTTAATG  750

seq1  TTATATAT-CCTTTTAGAGGATGCATCTTTTAAAAAATACTTTTACTTAT  793
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  TTATATATCCCTTTTAGAGGATGCATCTTTT-AAAAATACTTTTACTTAT  799

seq1  GTGTATTTATTTTTTTGTAAATATTTGCCATGTGGTGGTGCCCACAGACA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTATTTTTTTGTAAATATTTGCCATGTGGTGGTGCCCACAGACA  849

seq1  GAATAGAGTATTGGATCCTTTGGAGCTAGAATTGTAGGCAGTTTTATTGC  893
      ||||||| || ||||| | |||||||| ||||||||||||||||||||||
seq2  GAATAGA-TA-TGGATTCCTTGGAGCTTGAATTGTAGGCAGTTTTATTGC  897

seq1  AACCA  898
      |||||
seq2  AACCA  902