BAC Information

Click to search

BAC

Clone NameB6Ng01-082D24
Chromosome11 (Build37)
Map Location 31,888,140 - 32,032,822
singlet/doubletdoublet
Overlap geneNsg2, LOC669207
Upstream geneAsb3, Stc2, 2310022M17Rik, Cpeb4, 4930524B15Rik
Downstream geneIl9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082D24.bB6Ng01-082D24.g
ACCDH896861DH896862
length1,1141,044
definitionDH896861|Mus musculus domesticus DNA, BAC clone: B6Ng01-082D24, 5' end.DH896862|Mus musculus domesticus DNA, BAC clone: B6Ng01-082D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,031,687 - 32,032,822)(31,888,140 - 31,889,213)
sequence
gaattcaggacctctgctcgctccggcccaaagatttatttattattata
tgtaagtacgtcagacacaccagaagagggcgtcagatctcattatggat
ggttgtgagccaccatgtggttgctgggatttgaactcagggcctctgga
agagcagtcagtgctcttaaccgctgagccatctctccagccccagatgc
ctgagaataaatctattaatgctcactagagaacattgttagaatttatt
agaaacttttaatctctgatacagagtgcttttgcacatttgcatcccac
tgacaatcaagatgggactgtgaggtagagattttaatctttttaattgt
tattttatgcgtgtgagtgttttgcctgcataccacatgcatgcagttcc
taaagaggccagaagagggcataggatactctgaaactgaagttatgggt
gtttgaacttccatatgggagttaggaatcaacctgagtcctagggaatg
gcagccagttctcttaaccactgagccatctctatagcctcatcctgtgg
ggttgtaaagaagtttagaagtaacatgtgcacctgcctcacttcttggg
gctgccccgtctgcccattcctgctcattctggttctaatcacagaaatc
acatgactgtggtaggaacccccaacagctaagaaggaaaatagaaacca
gctgcaagggctggtctgtgtccctgtgtacaggggctcactcccacatt
gctcttgaagcccccttcctttccttgccttcgagttccagtcaatgttg
gaataactactggctagtagtttaaagtgcccaactgtatgtcaccattc
acaggagacagaagacagaaatgtgtgaaagtctcagccatgctggatct
ggggctctgcctctggggcttggctttgagacgtttcactgcccttgtgc
tggcacgagccccaggctgtttcttagcagagagctgctactgtggtggg
ccagaggcatgggagagaccttatcggctgagacaacattctctcctctt
tctatatttttgtgtacctggtccctcacctcacctacagctggttggag
tgtcctgtactcca
gaattctgagctgctgccctaattgatcagtattagggtgggcatccaac
aaaccatccctgtctgactgagattggtgtttgtgtggtttgtagggcaa
ctcttggaccccaacaaatctaatgtgtcttttttctaagatggctgccc
atgataagttaccggaaactcttttatctatggacatttcaaaggatctg
catgcttcctacacctcaggcttcagtgttttgtttccaggtaaaccccc
aggaaagggatggtaagagcactttgcatagctcattattaatcccagca
ctcaggaggcagactcaggaggatttctgagttcgaggccagcctggtct
acaaagtgagttccaggacagccagggctatacagagaaaccctctctca
aaaaaaccaaaaaaaaaaaaaacaacccacaaaacacaaaacacaaaaaa
caaaaacaaaaacaaaagcaaaaaactctcactgttggcttaagaacctt
attccaaatgtaaaagtctgataggaatttgagctcttcacagatctgct
ctgagaaactccctcagccaagcataaaaggggctttgctcaaaccacca
ctgggtgctctgtatttaaattccaaataacagaaatcaggaagctgaga
aaaacaaggggttctcttttttcttaaaaggtaggaggggagctgggcga
tggcctttaatcccagcactcgggaagcagcagcaggcggatttctgagt
tcaaggctagcctggtctacagagtgagttccaggacagctaggctatac
agagaaaccctgtctccaaaaaaaacaaaacaaaaaacaaaaaagaaggt
aggaggagacatgctacttctgaggtaagggaaaaagaatagtctgatca
gagtcttctggctgcccagaaatgatgagatggcaactcccaaagcaggg
gagagtcctggggtgaggctgcatagtcatcctgcagatgactaaaagac
ttcatactctagggtcatcagaaagatataggctgtcagaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_32031687_32032822
seq2: B6Ng01-082D24.b_49_1162 (reverse)

seq1  TGGAGGTACAGGACACTCAACCCAGCTGTTTGGGTGA-GTGAGGGGACCA  49
      |||| ||||||||||||| | |||||||  | ||||| |||| |||||||
seq2  TGGA-GTACAGGACACTCCAACCAGCTG--TAGGTGAGGTGA-GGGACCA  46

seq1  GGTAACACAAAAATATAAGGAAGA-GAGAGAATTGTTGTCCTCCAGCCGT  98
      ||| |||||||||||| || |||| ||||||| |||||||   |||||| 
seq2  GGT-ACACAAAAATAT-AGAAAGAGGAGAGAA-TGTTGTC--TCAGCCG-  90

seq1  ATTAAGTGTCCTCTCCCATGCCTCTGGCCCACCACAGTTAGCAGCTTCTC  148
      || | ||   ||||||||||||||||||||||||||| ||||||| ||||
seq2  ATAAGGT---CTCTCCCATGCCTCTGGCCCACCACAG-TAGCAGC-TCTC  135

seq1  TGGCTTAAGAAACAGGCCTGGGGGCTTCGTGCCAGCCACAAGGGCAGTGA  198
      ||   ||||||||| ||||||||   ||||||||| ||||||||||||||
seq2  TG--CTAAGAAACA-GCCTGGGG--CTCGTGCCAG-CACAAGGGCAGTGA  179

seq1  AACCTTCTTCAAAGGCCAAGCCCCAGAGGCAGAGCCCCAGATCCAGCATG  248
      ||| |   ||||| ||||||||||||||||||||||||||||||||||||
seq2  AACGT--CTCAAA-GCCAAGCCCCAGAGGCAGAGCCCCAGATCCAGCATG  226

seq1  GCTGAGACTTTCACACATTTCTGTCTTCTGTCTCCTGTGAATGGTGACAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGACTTTCACACATTTCTGTCTTCTGTCTCCTGTGAATGGTGACAT  276

seq1  ACAGTTGGGCACTTTAAACTACTAGCCAGTAGTTATTCCAACATTGACTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGGGCACTTTAAACTACTAGCCAGTAGTTATTCCAACATTGACTG  326

seq1  GAACTCGAAGGCAAGGAAAGGAAGGGGGCTTCAAGAGCAATGTGGGAGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCGAAGGCAAGGAAAGGAAGGGGGCTTCAAGAGCAATGTGGGAGTG  376

seq1  AGCCCCTGTACACAGGGACACAGACCAGCCCTTGCAGCTGGTTTCTATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTGTACACAGGGACACAGACCAGCCCTTGCAGCTGGTTTCTATTT  426

seq1  TCCTTCTTAGCTGTTGGGGGTTCCTACCACAGTCATGTGATTTCTGTGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTAGCTGTTGGGGGTTCCTACCACAGTCATGTGATTTCTGTGAT  476

seq1  TAGAACCAGAATGAGCAGGAATGGGCAGACGGGGCAGCCCCAAGAAGTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCAGAATGAGCAGGAATGGGCAGACGGGGCAGCCCCAAGAAGTGA  526

seq1  GGCAGGTGCACATGTTACTTCTAAACTTCTTTACAACCCCACAGGATGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGCACATGTTACTTCTAAACTTCTTTACAACCCCACAGGATGAG  576

seq1  GCTATAGAGATGGCTCAGTGGTTAAGAGAACTGGCTGCCATTCCCTAGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGAGATGGCTCAGTGGTTAAGAGAACTGGCTGCCATTCCCTAGGA  626

seq1  CTCAGGTTGATTCCTAACTCCCATATGGAAGTTCAAACACCCATAACTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTTGATTCCTAACTCCCATATGGAAGTTCAAACACCCATAACTTC  676

seq1  AGTTTCAGAGTATCCTATGCCCTCTTCTGGCCTCTTTAGGAACTGCATGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGAGTATCCTATGCCCTCTTCTGGCCTCTTTAGGAACTGCATGC  726

seq1  ATGTGGTATGCAGGCAAAACACTCACACGCATAAAATAACAATTAAAAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTATGCAGGCAAAACACTCACACGCATAAAATAACAATTAAAAAG  776

seq1  ATTAAAATCTCTACCTCACAGTCCCATCTTGATTGTCAGTGGGATGCAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATCTCTACCTCACAGTCCCATCTTGATTGTCAGTGGGATGCAAA  826

seq1  TGTGCAAAAGCACTCTGTATCAGAGATTAAAAGTTTCTAATAAATTCTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAAAGCACTCTGTATCAGAGATTAAAAGTTTCTAATAAATTCTAA  876

seq1  CAATGTTCTCTAGTGAGCATTAATAGATTTATTCTCAGGCATCTGGGGCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTCTCTAGTGAGCATTAATAGATTTATTCTCAGGCATCTGGGGCT  926

seq1  GGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCAGAGGCCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCAGAGGCCCT  976

seq1  GAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAG  1026

seq1  ATCTGACGCCCTCTTCTGGTGTGTCTGACGTACTTACATATAATAATAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACGCCCTCTTCTGGTGTGTCTGACGTACTTACATATAATAATAAA  1076

seq1  TAAATCTTTGGGCCGGAGCGAGCAGAGGTCCTGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTTGGGCCGGAGCGAGCAGAGGTCCTGAATTC  1114

seq1: chr11_31888140_31889213
seq2: B6Ng01-082D24.g_68_1111

seq1  GAATTCTGAGCTGCTGCCCTAATTGATCAGTATTAGGGTGGGCATCCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCTGCTGCCCTAATTGATCAGTATTAGGGTGGGCATCCAAC  50

seq1  AAACCATCCCTGTCTGACTGAGATTGGTGTTTGTGTGGTTTGTAGGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATCCCTGTCTGACTGAGATTGGTGTTTGTGTGGTTTGTAGGGCAA  100

seq1  CTCTTGGACCCCAACAAATCTAATGTGTCTTTTTTCTAAGATGGCTGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGACCCCAACAAATCTAATGTGTCTTTTTTCTAAGATGGCTGCCC  150

seq1  ATGATAAGTTACCGGAAACTCTTTTATCTATGGACATTTCAAAGGATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAGTTACCGGAAACTCTTTTATCTATGGACATTTCAAAGGATCTG  200

seq1  CATGCTTCCTACACCTCAGGCTTCAGTGTTTTGTTTCCAGGTAAACCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTCCTACACCTCAGGCTTCAGTGTTTTGTTTCCAGGTAAACCCCC  250

seq1  AGGAAAGGGATGGTAAGAGCACTTTGCATAGCTCATTATTAATCCCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGGATGGTAAGAGCACTTTGCATAGCTCATTATTAATCCCAGCA  300

seq1  CTCAGGAGGCAGACTCAGGAGGATTTCTGAGTTCGAGGCCAGCCTGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGGCAGACTCAGGAGGATTTCTGAGTTCGAGGCCAGCCTGGTCT  350

seq1  ACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTCTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTCTCTCA  400

seq1  AAAAAACCAAAAAAAAAAAAAACAACCCACAAAACACAAAACACAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCAAAAAAAAAAAAAACAACCCACAAAACACAAAACACAAAAAA  450

seq1  CAAAAACAAAAACAAAAGCAAAAAACTCTCACTGTTGGCTTAAGAACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAAAACAAAAGCAAAAAACTCTCACTGTTGGCTTAAGAACCTT  500

seq1  ATTCCAAATGTAAAAGTCTGATAGGAATTTGAGCTCTTCACAGATCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAATGTAAAAGTCTGATAGGAATTTGAGCTCTTCACAGATCTGCT  550

seq1  CTGAGAAACTCCCTCAGCCAAGCATAAAAGGGGCTTTGCTCAAACCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAACTCCCTCAGCCAAGCATAAAAGGGGCTTTGCTCAAACCACCA  600

seq1  CTGGGTGCTCTGTATTTAAATTCCAAATAACAGAAATCAGGAAGCTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGCTCTGTATTTAAATTCCAAATAACAGAAATCAGGAAGCTGAGA  650

seq1  AAAACAAGGGGTTCTCTTTTTTCTTAAAAGGTAGGAGGGGAGCTGGGCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGGGGTTCTCTTTTTTCTTAAAAGGTAGGAGGGGAGCTGGGCGA  700

seq1  TGGCCTTTAATCCCAGCACTCGGGAAGCAGCAGCAGGCGGATTTCTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTAATCCCAGCACTCGGGAAGCAGCAGCAGGCGGATTTCTGAGT  750

seq1  TCAAGGCTAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCTAGGGCTATA  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCAAGGCTAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCTA-GGCTATA  799

seq1  CAGAGAAACCCTGTCTCCAAAAAAAACAAAAACAAAAAAACAAAAAAAGA  850
      ||||||||||||||||||||||||||| |||||||||||   ||||||||
seq2  CAGAGAAACCCTGTCTCCAAAAAAAAC-AAAACAAAAAA--CAAAAAAGA  846

seq1  AGGTAGGAGGAGACATTGCTACTTCTGAGGTAAAGGAAAAAAAGAATAGT  900
      ||||||||||||||| ||||||||||||||||| ||  ||||||||||||
seq2  AGGTAGGAGGAGACA-TGCTACTTCTGAGGTAAGGG--AAAAAGAATAGT  893

seq1  CTGATCAGAGGTTCTTCTGGCTGCCCAGAAAAAGATGAAGATGGCAACTC  950
      ||||||||||  |||||||||||||||| ||| |||| ||||||||||| 
seq2  CTGATCAGAG--TCTTCTGGCTGCCCAG-AAATGATG-AGATGGCAACT-  938

seq1  CCCAAAGCAAGGGGGAGAGTCCTGGGGGTGAGGCTGCCATAAGTCATCCT  1000
      |||||||||  |||||||||||| |||||||||||| ||| |||||||||
seq2  CCCAAAGCA--GGGGAGAGTCCT-GGGGTGAGGCTG-CAT-AGTCATCCT  983

seq1  GCAGATGACTTACAAAGAACCTTCCAATTAACCTCTAGGAGTCCATTCAG  1050
      ||||||||||   |||||  ||||     |  ||||||| |||   ||||
seq2  GCAGATGACT--AAAAGA--CTTC-----ATACTCTAGG-GTC--ATCAG  1021

seq1  AAAGATATAAGCTGGTCAGAATAA  1074
      ||||||||| ||| ||||||||||
seq2  AAAGATATAGGCT-GTCAGAATAA  1044