BAC Information

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BAC

Clone NameB6Ng01-082F18
Chromosome9 (Build37)11 (Build37)
Map Location 106,848,005 - 106,848,5318,855,449 - 8,855,763
singlet/doubletsingletsinglet
Overlap geneDock3
Upstream geneEG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet
Downstream geneMapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082F18.bB6Ng01-082F18.g
ACCDH896934DH896935
length385900
definitionDH896934|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F18, 5' end.DH896935|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,848,005 - 106,848,531)(8,855,449 - 8,855,763)
sequence
agaacttgacttgactgcctctggagtgctgggactaaagacatgtgacc
tccactgctaccaccattctggcccccagcttcatagactgtcttacaca
gactctccctctcccagactctctcctcaactatcagtagctacaggatg
agagctcataagcccctcctcacttcatgctggaatgaagacaaccatgg
atgctgtgggttcatgagggtaacagtcctgtaatactcacaagaccgag
ttttactccagggatccctgaacactggctctaacaatcttcccatgact
gcattcacgatgttcccaaatctcatctcatctcatctcttctttctctt
ctcttctcttctcttctcttctcttctcttatctt
gaattctttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctacctttttaggtgtgttagggtgtcctggactgggcgaagtg
ggtgttctgggttctgatgatggtgagtggtcctggtttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcaa
tcagcaggcgtgggagacaagctctctcctctgagtttcagtggtcaggg
cagtctctgcaggcaagctctcctctttcggggaaggtgtacagttatct
ggtgattggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccggttgtctggagt
cgaagatgtcgcttcctcagaagctctgtggctctcgccaggaaggtggc
cggttgtctggaactgaagatggcgccgccccagaggctctgtgactctc
gcctgtaccagaaacggctggcctctgtattccacacggtcacccgtgca
gcctgccctccgcggagtcccggagccaagaaggctcccgccggcgcctg
tgacacaaacctctcaggccgggcagacccccgtgctctcaccaggaagt
ggccggctgtctccagattatttttgaagaaaactaaggatggggaaata
tctttgacagttgtagaactgtttcatctttataacttttttcagtgaag
tgtgtgtgtgtatacatatttatatatatgtgtgtgtgtgtatacattta
tttatacacatgtgtgtatacatatatatacatgtgtgtatacatatata

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_106848005_106848531
seq2: B6Ng01-082F18.b_45_435

seq1  GAATTCAGAACTTGACTTGACTGCCTCTGGAGTGCTGGGACTAAAGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACTTGACTTGACTGCCTCTGGAGTGCTGGGACTAAAGACAT  50

seq1  GTGACCTCCACTGCTACCACCATTCTGGCCCCCAGCTTCATAGACTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTCCACTGCTACCACCATTCTGGCCCCCAGCTTCATAGACTGTCT  100

seq1  TACACAGACTCTCCCTCTCCCAGACTCTCTCCTCAACTATCAGTAGCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGACTCTCCCTCTCCCAGACTCTCTCCTCAACTATCAGTAGCTAC  150

seq1  AGGATGAGAGCTCATAAGCCCCTCCTCACTTCATGCTGGAATGAAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAGAGCTCATAAGCCCCTCCTCACTTCATGCTGGAATGAAGACAA  200

seq1  CCATGGATGCTGTGGGTTCATGAGGGTAACAGTCCTGTAATACTCACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGATGCTGTGGGTTCATGAGGGTAACAGTCCTGTAATACTCACAAG  250

seq1  ACCGAGTTTTACTCCAGGGATCCCTGAACACTGGCTCTAACAATCTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGTTTTACTCCAGGGATCCCTGAACACTGGCTCTAACAATCTTCCC  300

seq1  ATGACTGCATTCACGATGTTCCCAAATCTCATCTCATCTCATCTCTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGCATTCACGATGTTCCCAAATCTCATCTCATCTCATCTCTTCTT  350

seq1  TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT  400
      |||||||||||||||||||||||||||||||||||| ||||         
seq2  TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTATCTT---------  391

seq1  TCTCTTCTCTTCTCTTCTCTTCTCTTTCTCCTCTCCTCTCCCTCTCTCCT  450
                                                        
seq2  --------------------------------------------------  391

seq1  CCCTCTCCTCCTCCCCTCCCCCCTCTTCTCTCTCTCTCTCTCTCTCTCTT  500
                                                        
seq2  --------------------------------------------------  391

seq1  TCTCTCTCTCTCTCTCTCTCTCATCTT  527
                                 
seq2  ---------------------------  391

seq1: chr11_8855449_8855763
seq2: B6Ng01-082F18.g_803_966 (reverse)

seq1  TATATATGTATACACACATGTGTATATATGTATACACACA--TGTATATA  48
      ||||||||||||||||||||| ||||||||||||||||||  |||||| |
seq2  TATATATGTATACACACATGTATATATATGTATACACACATGTGTATAAA  50

seq1  TGTATATATACACACATATGTATATATATGCATATGTATATACACACATA  98
      |  || |||||||||| |   ||||||||  ||||||||| ||||||| |
seq2  TAAATGTATACACACACACACATATATATAAATATGTATACACACACACA  100

seq1  ------TGTATATATGTATATACAT-ATATATTTTTTTGCCTGCTATGAG  141
            || | | |  |||| | || | | | ||         |||  | 
seq2  CTTCACTGAAAAAAGTTATAAAGATGAAACAGTT---------CTACAA-  140

seq1  TATGTAAATGTAAATACTTACTTTTTCTTTCAAGAATGAGGCTAATTAAA  191
        ||| ||   | ||| || |   | ||                      
seq2  -CTGTCAA---AGATATTTCCCCATCCT----------------------  164

seq1  AATGTCAAAGGAAAAGTTACCAGATTTGATTACATTACAATGTCTTTTAA  241
                                                        
seq2  --------------------------------------------------  164

seq1  TTGTTATTTGTTTGTATATTTATTATGGACCTCACAGCTGTGTTGCTCTT  291
                                                        
seq2  --------------------------------------------------  164

seq1  CCCAAGCACTTTATGCCCCATCCT  315
                              
seq2  ------------------------  164