BAC Information

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BAC

Clone NameB6Ng01-082H06
Chromosome11 (Build37)
Map Location 4,482,240 - 4,629,108
singlet/doubletdoublet
Overlap geneMtmr3, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5
Upstream geneMap1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, LOC100041006
Downstream geneCabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082H06.bB6Ng01-082H06.g
ACCDH897003DH897004
length1,1961,039
definitionDH897003|Mus musculus domesticus DNA, BAC clone: B6Ng01-082H06, 5' end.DH897004|Mus musculus domesticus DNA, BAC clone: B6Ng01-082H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,627,894 - 4,629,108)(4,482,240 - 4,483,276)
sequence
gaattcttaatgcttgtggctacacctcccaagtgaagatgggccagcac
cagcacaccaatcctatactcatttccttatgagtttaggccttcaaagg
aacacctagcacacgtggctgtgactctgaacttgtaattctagacctgt
tcttatctctgttctgctggctgggaaagagaacacaagagatcaggctc
cctggcgaacttaaccagctgatctatgacctccgtagtcttccctggct
tatgtctctgagggcttcttattctaagtgagccagtaaaatcctattca
acatctgagggtctttctaggtgagaagaccttcctagagatgttacaac
tgaccaagactacaagtagtttagtaggcagggactggaggagacacgac
tgggtgctgtaggccagacaagatgacgcttttctgtcaggagcagagtt
gagcttacctgtcagcaggaatttcctgcagggccgcttgttctgttcat
ccagcaagatggcagctgcatctggaagaaaaggctggattcagatggct
ccacctgggagggagagcctcggggtgtgacatcagtggtacacagccct
aaggagagagctctctatccatggaggagtgtaagctggggttggccaca
gtgatggagatggacagaggtgttcaaatcgaggtaacctccactcccta
cacccactcgggaccagctaaaaccatgaagcagcttgaggctagaggct
ctgagcagcagttgtctgcacaatgggttcagatggggaagtttatttga
aaaatctagcaccacaggacctctgtgtacttcctgcaagctggtgagca
gtcacagagcacacacatgtcctactccatgggcaggcacacatacaaca
gtgacctatcacttagtgatgtccatgactgctctagttggtgacagcta
cacacaatgtgtccttgttaataagtgacacatatatttccacatgaaaa
cttttcttaaagtctgatgcacagatggcatcccgccagggcctagtatt
gcctgaagaggaggctggtacccccattcttcatttctctggcatcaagg
gtggagactcaaagccacaccagcccagcctgataaggctctcagcagca
ttctggatgcctaattaaactctgtcattcccccctttattccatt
gaattccaggatagccaaggttacacagagaaaccctgtcttaaaaaaac
aaacaaaagggctggagagatggctcagtggttaagagcactagcactga
ctgctcttccagagggcctggattcaattcccagaaaccaaatggtggct
cacagcccaaccactagtctgatgccctcttctggtgtgtctaaagacag
ctacaaatgtactcatataaattaaataaataaaactttaaaacatttgg
tatagcattggaaatgtaaatgagctaaatacctaataaaaaaaaatgga
aaaaaaaaaaaaaaactttaaaacaaacaaaaagctgaatcagctagata
ttatatttgagtgtacatacatgtacaggtcaagtatcaatatcaagtgt
cttactcaattactctctactttattttctgagacaggctctctcactga
acccagaacccatgattccactgagacagtgaaatctcttgccttaacca
gcactgggattatagacatacacctggttttttatgtgggtgataggata
caaactcttcaggcttatatacgttctatcaagcacgcttccaactgagt
catctcttcagccacaggcactttacttttttccatcaaaacaataaata
catgggcatacatacatgtgtatactttctagcacctttagttgtaattt
atcaaaatctaaaaacaatacaataaaataagagatataaactgtggcat
attcatacaacaaaatactattctgaagtaaaaactgattactgataacc
aaaaacaggatgagtatcaaatcacactatatcaagtacatatgccatat
tataacctctgcctttcaaaggcagattcactgcatgttcaaagccaccc
tagtatacacaggaagtttcaggacagccagaaatacatatagtgtagat
gccatctcactataaggctgcatgctgtggtggcccatacttagaatttt
aaaaaagaccaagcccttaaaaggaaaccaacagcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_4627894_4629108
seq2: B6Ng01-082H06.b_40_1235 (reverse)

seq1  AATGAGAATAAAGAGAGGAGAAATTAGAAACCAGAGTTAAATTA-GCATC  49
      |||| ||||||||   || | ||| |     ||||||| ||||| |||||
seq2  AATG-GAATAAAG---GGGGGAATGA-----CAGAGTTTAATTAGGCATC  41

seq1  CAGAATGACTGCTGAGAAGCCCTATACAGGCTGTGCTGGTGTGGCTTTGA  99
      ||||||| |||||||| |||| ||| ||||||| ||||||||||||||||
seq2  CAGAATG-CTGCTGAG-AGCCTTAT-CAGGCTGGGCTGGTGTGGCTTTGA  88

seq1  GTCTCCACCACTGATGCCAGGAGAAATGAAGAGTGGGGGTCACAGCCTCC  149
      |||||||||  |||||||| |||||||||||| |||||||  |||||| |
seq2  GTCTCCACCCTTGATGCCA-GAGAAATGAAGAATGGGGGTACCAGCCT-C  136

seq1  CTCTTCAAGCCATACCTAGGCCCTGGCGGGATGCCATCCTGTGCATCAGG  199
      ||||||| || ||| |||||||||||||||||||||| |||||||||| |
seq2  CTCTTCAGGCAATA-CTAGGCCCTGGCGGGATGCCAT-CTGTGCATCA-G  183

seq1  ACTTTGAGAAAAGTTTTTCATGTTGAAATACTATGTGTCACTTAATAACA  249
      ||||| ||||||| ||||||||| |||||| ||||||||||||| |||||
seq2  ACTTTAAGAAAAG-TTTTCATGTGGAAATA-TATGTGTCACTTATTAACA  231

seq1  AGGACACATTGTTGTGTAGCTGTCACCAACTAGAGCAGTCAT-GACATCA  298
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  AGGACACATTG-TGTGTAGCTGTCACCAACTAGAGCAGTCATGGACATCA  280

seq1  CTAAGTGATAGGTCACTGTTGTATGTGTGGCCTG-CCATGGAGTAGGACA  347
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  CTAAGTGATAGGTCACTGTTGTATGTGT-GCCTGCCCATGGAGTAGGACA  329

seq1  TGTGTGTGCTCTGTGACTGCTCACCAGCTTGCAGGAAGTACACAGAGGTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCTCTGTGACTGCTCACCAGCTTGCAGGAAGTACACAGAGGTC  379

seq1  CTGTGGTGCTAGATTTTTCAAATAAACTTCCCCATCTGAACCCATTGTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGCTAGATTTTTCAAATAAACTTCCCCATCTGAACCCATTGTGC  429

seq1  AGACAACCTGCTGCTCAGAGCCTCTAGCCTCAAGCTGCTTCATGGTTTTA  497
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAA-CTGCTGCTCAGAGCCTCTAGCCTCAAGCTGCTTCATGGTTTTA  478

seq1  GCTGGTCCCGAGTGGGTGTAGGGAGTGGAGGTTACCTCGATTTGAACACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCCCGAGTGGGTGTAGGGAGTGGAGGTTACCTCGATTTGAACACC  528

seq1  TCTGTCCATCTCCATCACTGTGGCCAACCCCAGCTTACACTCCTCCATGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCATCTCCATCACTGTGGCCAACCCCAGCTTACACTCCTCCATGG  578

seq1  ATAGAGAGCTCTCTCCTTAGGGCTGTGTACCACTGATGTCACACCCCGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGCTCTCTCCTTAGGGCTGTGTACCACTGATGTCACACCCCGAG  628

seq1  GCTCTCCCTCCCAGGTGGAGCCATCTGAATCCAGCCTTTTCTTCCAGATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCTCCCAGGTGGAGCCATCTGAATCCAGCCTTTTCTTCCAGATG  678

seq1  CAGCTGCCATCTTGCTGGATGAACAGAACAAGCGGCCCTGCAGGAAATTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCATCTTGCTGGATGAACAGAACAAGCGGCCCTGCAGGAAATTC  728

seq1  CTGCTGACAGGTAAGCTCAACTCTGCTCCTGACAGAAAAGCGTCATCTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGACAGGTAAGCTCAACTCTGCTCCTGACAGAAAAGCGTCATCTTG  778

seq1  TCTGGCCTACAGCACCCAGTCGTGTCTCCTCCAGTCCCTGCCTACTAAAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCTACAGCACCCAGTCGTGTCTCCTCCAGTCCCTGCCTACTAAAC  828

seq1  TACTTGTAGTCTTGGTCAGTTGTAACATCTCTAGGAAGGTCTTCTCACCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTAGTCTTGGTCAGTTGTAACATCTCTAGGAAGGTCTTCTCACCT  878

seq1  AGAAAGACCCTCAGATGTTGAATAGGATTTTACTGGCTCACTTAGAATAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACCCTCAGATGTTGAATAGGATTTTACTGGCTCACTTAGAATAA  928

seq1  GAAGCCCTCAGAGACATAAGCCAGGGAAGACTACGGAGGTCATAGATCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTCAGAGACATAAGCCAGGGAAGACTACGGAGGTCATAGATCAG  978

seq1  CTGGTTAAGTTCGCCAGGGAGCCTGATCTCTTGTGTTCTCTTTCCCAGCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAAGTTCGCCAGGGAGCCTGATCTCTTGTGTTCTCTTTCCCAGCC  1028

seq1  AGCAGAACAGAGATAAGAACAGGTCTAGAATTACAAGTTCAGAGTCACAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAACAGAGATAAGAACAGGTCTAGAATTACAAGTTCAGAGTCACAG  1078

seq1  CCACGTGTGCTAGGTGTTCCTTTGAAGGCCTAAACTCATAAGGAAATGAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGTGCTAGGTGTTCCTTTGAAGGCCTAAACTCATAAGGAAATGAG  1128

seq1  TATAGGATTGGTGTGCTGGTGCTGGCCCATCTTCACTTGGGAGGTGTAGC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGATTGGTGTGCTGGTGCTGGCCCATCTTCACTTGGGAGGTGTAGC  1178

seq1  CACAAGCATTAAGAATTC  1215
      ||||||||||||||||||
seq2  CACAAGCATTAAGAATTC  1196

seq1: chr11_4482240_4483276
seq2: B6Ng01-082H06.g_65_1103

seq1  GAATTCCAGGATAGCCAAGGTTACACAGAGAAACCCTGTCTTAAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATAGCCAAGGTTACACAGAGAAACCCTGTCTTAAAAAAAC  50

seq1  AAACAAAAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTAGCACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTAGCACTGA  100

seq1  CTGCTCTTCCAGAGGGCCTGGATTCAATTCCCAGAAACCAAATGGTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTCCAGAGGGCCTGGATTCAATTCCCAGAAACCAAATGGTGGCT  150

seq1  CACAGCCCAACCACTAGTCTGATGCCCTCTTCTGGTGTGTCTAAAGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCAACCACTAGTCTGATGCCCTCTTCTGGTGTGTCTAAAGACAG  200

seq1  CTACAAATGTACTCATATAAATTAAATAAATAAAACTTTAAAACATTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAATGTACTCATATAAATTAAATAAATAAAACTTTAAAACATTTGG  250

seq1  TATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAAAAATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAAAAATGGA  300

seq1  AAAAAAAAAAAAAAACTTTAAAACAAACAAAAAGCTGAATCAGCTAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAACTTTAAAACAAACAAAAAGCTGAATCAGCTAGATA  350

seq1  TTATATTTGAGTGTACATACATGTACAGGTCAAGTATCAATATCAAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTGAGTGTACATACATGTACAGGTCAAGTATCAATATCAAGTGT  400

seq1  CTTACTCAATTACTCTCTACTTTATTTTCTGAGACAGGCTCTCTCACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCAATTACTCTCTACTTTATTTTCTGAGACAGGCTCTCTCACTGA  450

seq1  ACCCAGAACCCATGATTCCACTGAGACAGTGAAATCTCTTGCCTTAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAACCCATGATTCCACTGAGACAGTGAAATCTCTTGCCTTAACCA  500

seq1  GCACTGGGATTATAGACATACACCTGGTTTTTTATGTGGGTGATAGGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGATTATAGACATACACCTGGTTTTTTATGTGGGTGATAGGATA  550

seq1  CAAACTCTTCAGGCTTATATACGTTCTATCAAGCACGCTTCCAACTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTTCAGGCTTATATACGTTCTATCAAGCACGCTTCCAACTGAGT  600

seq1  CATCTCTTCAGCCACAGGCACTTTAC-TTTTTCCATCAAAACAATAAATA  649
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATCTCTTCAGCCACAGGCACTTTACTTTTTTCCATCAAAACAATAAATA  650

seq1  CATGGGCATACATACATGTGTATACTTTCTAGCACCTTTAGTTGTAA-TT  698
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATGGGCATACATACATGTGTATACTTTCTAGCACCTTTAGTTGTAATTT  700

seq1  ATCAAAATCTAAAAACAATACAATAAAATAAGAGATATAAACTGTGGCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATCTAAAAACAATACAATAAAATAAGAGATATAAACTGTGGCAT  750

seq1  ATTCATACAACAAAATACTATTCTGAAGTAAAAACTGATTACTGATAACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATACAACAAAATACTATTCTGAAGTAAAAACTGATTACTGATAACC  800

seq1  AAAAACAGGATGAGTATCAAATCACACTATATCAAGTACAATATGCCATA  848
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAAACAGGATGAGTATCAAATCACACTATATCAAGTAC-ATATGCCATA  849

seq1  TTATAACCTCTGCCTTTCAAAGGCAGAATCACTGCATGTTCAAAGCCACC  898
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTATAACCTCTGCCTTTCAAAGGCAGATTCACTGCATGTTCAAAGCCACC  899

seq1  CTAGTATACACAGGAAGTTTCAGGACAGCCAGAAATACATATAGTG-AGA  947
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTAGTATACACAGGAAGTTTCAGGACAGCCAGAAATACATATAGTGTAGA  949

seq1  TGCCATCTCACTATAAAGGCTGCATGCTGT-GTGGCCCATACATAGAATT  996
      |||||||||||||| ||||||||||||||| ||||||||||| |||||||
seq2  TGCCATCTCACTAT-AAGGCTGCATGCTGTGGTGGCCCATACTTAGAATT  998

seq1  TTAAAATAGACAAAGCCATAAAAAGAAAACAAACAGCCAGA  1037
      |||||| |||| ||||| | ||||| |||| ||||||| ||
seq2  TTAAAAAAGACCAAGCCCTTAAAAGGAAACCAACAGCCTGA  1039