BAC Information

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BAC

Clone NameB6Ng01-082I08
Chromosome11 (Build37)
Map Location 20,980,897 - 21,116,181
singlet/doubletdoublet
Overlap genePeli1
Upstream geneActr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035
Downstream geneVps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1, Ehbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082I08.bB6Ng01-082I08.g
ACCDH897050DH897051
length1,148522
definitionDH897050|Mus musculus domesticus DNA, BAC clone: B6Ng01-082I08, 5' end.DH897051|Mus musculus domesticus DNA, BAC clone: B6Ng01-082I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,115,016 - 21,116,181)(20,980,897 - 20,981,424)
sequence
gaattcaggaaaagacgagtcacacagacagtgagcggcgcagctctaga
caaaagcaaaggccttacacctcaggactcatcagcccccatccgaccaa
gaggacaaatggagatggcagcaaggtgcgaagaaaaacggaaccattaa
gtttctggataataagtgtgtcaagactataaatatactcttgtcatttt
atgcaatttatatagaatattctataagtattaactattaaattaatttt
ttgtcctatgctttattttgccaaaaaataattccatttgacactgaatg
attatgatagaactgtaacgaaagggggacgttgagaagagctacatctt
taacagactcagcaggatgtcaacaatgtctcaaactgaaggtcaaagga
gcaaattacctaacccggaagatgaaaaagatgaagcccctaagatggtt
gtggtaatgtcagcctagagggcagggaggtggaaccgagagatgctgtg
tcttacctaagtctttctgaatgaccttaaaaatatcatgtatactgctt
taataaaaaaaagtaaatcaaaatattggcatatatctttcagataaaat
tggaggtattggatcaaaggaaataatatgtttatactttccccaagttc
catagaaccaccctccaggagttacaggagccacactcctatcatctctg
ttcagtactcattcctcgacttcttgcctaaggcaggtaattaaaaacac
tttttgttagtttttttaaaaattataacatttttaagtgtttttttctt
tctcttattgaaaaaaattagaaatggctatttaaaatagtacaaaaacc
actggaaggtggtgcacacctttaatctcagcacttaggagcagaggctt
gtgggttctctgtgagttttgaggccagcttgttcaaagagcaagttcca
ggacagcaggatacacagaagaagccctgtctcaaaaaaaaaaatcaaat
taataaaatattttttttaaagtgaataaatggtaaaaatcaacagatat
ttcgagacaacagagaacatggattctaaatgtcatcagcttgtttaact
gctaagagcaaatgtatgtgtctgtttaactattggaagcttaaattc
tcacatagagaaaaaaacgaacaaacaacaaagccacacagcgaaagatc
tccagtgagaacaggagaccttgggctaatgcttagggtgtgctgctgag
gttgtcatgctggggccaatgcttgccgtaggaggggaatctggtggagc
tgcacaggcttccgggctacacctcggcatggggtatagctgtttggaat
aaagactggaagcttctgctaagatgttttcagtccaacaagtgtcttag
ggtggttatctggcgggaaggaaagcttaagggtgaaagtgaaacaaaag
tctattgatacatttgctgttgccattgcccaaagtaataatagatctaa
ttcagagcgatgataccggtgggaggagatgcacatgctaagtgttctga
cttcatcacagtgaattgtgcaatattcaaagtattgctccatatccaat
aaatacatatgaatattatgtgccgagcctgtctgtctctgtatgtgtgt
gtgtgtgtgtgtatgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_21115016_21116181
seq2: B6Ng01-082I08.b_44_1191 (reverse)

seq1  GAATTTTTAAAGCTTCCCAATATGTTTAAAACAGACACATACATTTGTGC  50
      ||||||   |||||| |||||| |||  |||||||||||||||||  |||
seq2  GAATTT---AAGCTT-CCAATA-GTT--AAACAGACACATACATT--TGC  41

seq1  TCTTAGCCAGTTAAACAAGCTGATGACATTTTAGATTCATGTTCTCTGTT  100
      |||||| ||||||||||||||||||||||||   || |||||||||||||
seq2  TCTTAG-CAGTTAAACAAGCTGATGACATTTAGAATCCATGTTCTCTGTT  90

seq1  GTCCTCGAAAATATCCTGTTGATTTTTGTACCATTTTATTCACTTT-AAA  149
      || |||| |||||| |||||||||||  ||||| |||||||||||| |||
seq2  GT-CTCG-AAATAT-CTGTTGATTTT--TACCA-TTTATTCACTTTAAAA  134

seq1  AAAATATTTTATTTATTTGATTTTTTTTTTTTGAGACAGGGCTTC-TCTG  198
      ||||||||||||| |||||| |||||||||||||||||||||||| ||||
seq2  AAAATATTTTATTAATTTGA-TTTTTTTTTTTGAGACAGGGCTTCTTCTG  183

seq1  TGTATCCCTGCCTGTCCTGGAACTTGCTCTGTAGACCAAGCTGGCCTC-A  247
      ||||| |||| ||||||||||||||||||| | || |||||||||||| |
seq2  TGTAT-CCTG-CTGTCCTGGAACTTGCTCT-TTGAACAAGCTGGCCTCAA  230

seq1  AACTCACAGAG-ACCCACATGCCTCTGCCTCCTAAGTGCTGAGATTAAAG  296
      ||||||||||| ||||||| ||||||| ||||||||||||||||||||||
seq2  AACTCACAGAGAACCCACAAGCCTCTG-CTCCTAAGTGCTGAGATTAAAG  279

seq1  GTGTGCACCACCTTCCAGTGGTTTTTGTACTATTTTAAATAGCCATTTTC  346
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTGTGCACCACCTTCCAGTGGTTTTTGTACTATTTTAAATAGCCA-TTTC  328

seq1  TAATTTTTTTCAATAAGAGAAAGAAAAAAACACTTAAAAATGTTATAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTTCAATAAGAGAAAGAAAAAAACACTTAAAAATGTTATAATT  378

seq1  TTTAAAAAAACTAACAAAAAGTGTTTTTAATTACCTGCCTTAGGCAAGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAACTAACAAAAAGTGTTTTTAATTACCTGCCTTAGGCAAGAA  428

seq1  GTCGAGGAATGAGTACTGAACAGAGATGATAGGAGTGTGGCTCCTGTAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAGGAATGAGTACTGAACAGAGATGATAGGAGTGTGGCTCCTGTAAC  478

seq1  TCCTGGAGGGTGGTTCTATGGAACTTGGGGAAAGTATAAACATATTATTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGGGTGGTTCTATGGAACTTGGGGAAAGTATAAACATATTATTT  528

seq1  CCTTTGATCCAATACCTCCAATTTTATCTGAAAGATATATGCCAATATTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGATCCAATACCTCCAATTTTATCTGAAAGATATATGCCAATATTT  578

seq1  TGATTTACTTTTTTTTATTAAAGCAGTATACATGATATTTTTAAGGTCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTACTTTTTTTTATTAAAGCAGTATACATGATATTTTTAAGGTCAT  628

seq1  TCAGAAAGACTTAGGTAAGACACAGCATCTCTCGGTTCCACCTCCCTGCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGACTTAGGTAAGACACAGCATCTCTCGGTTCCACCTCCCTGCC  678

seq1  CTCTAGGCTGACATTACCACAACCATCTTAGGGGCTTCATCTTTTTCATC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGCTGACATTACCACAACCATCTTAGGGGCTTCATCTTTTTCATC  728

seq1  TTCCGGGTTAGGTAATTTGCTCCTTTGACCTTCAGTTTGAGACATTGTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGGTTAGGTAATTTGCTCCTTTGACCTTCAGTTTGAGACATTGTTG  778

seq1  ACATCCTGCTGAGTCTGTTAAAGATGTAGCTCTTCTCAACGTCCCCCTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTGCTGAGTCTGTTAAAGATGTAGCTCTTCTCAACGTCCCCCTTT  828

seq1  CGTTACAGTTCTATCATAATCATTCAGTGTCAAATGGAATTATTTTTTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACAGTTCTATCATAATCATTCAGTGTCAAATGGAATTATTTTTTGG  878

seq1  CAAAATAAAGCATAGGACAAAAAATTAATTTAATAGTTAATACTTATAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAAGCATAGGACAAAAAATTAATTTAATAGTTAATACTTATAGA  928

seq1  ATATTCTATATAAATTGCATAAAATGACAAGAGTATATTTATAGTCTTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTATATAAATTGCATAAAATGACAAGAGTATATTTATAGTCTTGA  978

seq1  CACACTTATTATCCAGAAACTTAATGGTTCCGTTTTTCTTCGCACCTTGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTATTATCCAGAAACTTAATGGTTCCGTTTTTCTTCGCACCTTGC  1028

seq1  TGCCATCTCCATTTGTCCTCTTGGTCGGATGGGGGCTGATGAGTCCTGAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCTCCATTTGTCCTCTTGGTCGGATGGGGGCTGATGAGTCCTGAG  1078

seq1  GTGTAAGGCCTTTGCTTTTGTCTAGAGCTGCGCCGCTCACTGTCTGTGTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGGCCTTTGCTTTTGTCTAGAGCTGCGCCGCTCACTGTCTGTGTG  1128

seq1  ACTCGTCTTTTCCTGAATTC  1166
      ||||||||||||||||||||
seq2  ACTCGTCTTTTCCTGAATTC  1148

seq1: chr11_20980897_20981424
seq2: B6Ng01-082I08.g_68_595

seq1  GAATTCTCACATAGAGAAAAAAACGAACAAACAACAAAGCCACACAGCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACATAGAGAAAAAAACGAACAAACAACAAAGCCACACAGCGA  50

seq1  AAGATCTCCAGTGAGAACAGGAGACCTTGGGCTAATGCTTAGGGTGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCCAGTGAGAACAGGAGACCTTGGGCTAATGCTTAGGGTGTGCT  100

seq1  GCTGAGGTTGTCATGCTGGGGCCAATGCTTGCCGTAGGAGGGGAATCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGTTGTCATGCTGGGGCCAATGCTTGCCGTAGGAGGGGAATCTGG  150

seq1  TGGAGCTGCACAGGCTTCCGGGCTACACCTCGGCATGGGGTATAGCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTGCACAGGCTTCCGGGCTACACCTCGGCATGGGGTATAGCTGTT  200

seq1  TGGAATAAAGACTGGAAGCTTCTGCTAAGATGTTTTCAGTCCAACAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAAAGACTGGAAGCTTCTGCTAAGATGTTTTCAGTCCAACAAGTG  250

seq1  TCTTAGGGTGGTTATCTGGCGGGAAGGAAAGCTTAAGGGTGAAAGTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGGTGGTTATCTGGCGGGAAGGAAAGCTTAAGGGTGAAAGTGAAA  300

seq1  CAAAAGTCTATTGATACATTTGCTGTTGCCATTGCCCAAAGTAATAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTCTATTGATACATTTGCTGTTGCCATTGCCCAAAGTAATAATAG  350

seq1  ATCTAATTCAGAGCGATGATACCGGTGGGAGGAGATGCACATGCTAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATTCAGAGCGATGATACCGGTGGGAGGAGATGCACATGCTAAGTG  400

seq1  TTCTGACTTCATCACAGTGAATTGTGCAATATTCAAAGTATTGCTCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTTCATCACAGTGAATTGTGCAATATTCAAAGTATTGCTCCATA  450

seq1  TCCAATAAATACATATGAATATTATGTGCCGAGCCTGTCTGTCTCTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAAATACATATGAATATTATGTGCCGAGCCTGTCTGTCTCTGTAT  500

seq1  GTGTGTGTGTGTGTGTGTATGTGTGTGT  528
      ||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTATGTGTGTGT  528