BAC Information

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BAC

Clone NameB6Ng01-083A03
Chromosome11 (Build37)
Map Location 8,481,027 - 8,610,691
singlet/doubletdoublet
Overlap geneTns3
Upstream geneLOC665380
Downstream geneLOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083A03.bB6Ng01-083A03.g
ACCDH897392DH897393
length1,2301,088
definitionDH897392|Mus musculus domesticus DNA, BAC clone: B6Ng01-083A03, 5' end.DH897393|Mus musculus domesticus DNA, BAC clone: B6Ng01-083A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,481,027 - 8,482,277)(8,609,600 - 8,610,691)
sequence
gaattcctataccatgccagaaactcgagtttaaaaatgatggataaggg
tttggcatgggcacacatctttaacgcaagaatttgggaaatagaggaag
aatctgtcagtttgaagccagcctggtctacaaagagttcagaccagaga
aggatacatagggagaccttgtttaaacatcacacacacactcacacaca
cacacacacacacacacacacacacacacacggcagggggtcttctacat
cgcacatccccctataaacaggtgctgtgcagtgtgcagctccagggact
agaaatgagacataagctctgtgatcaggttactcaagtcctaggcagac
catctacaatcaacaaaacacatcacgatatgtccttccaatttagctac
aaccagatatcaggacgagagaaacctggctataatcggcatttgtagtt
tacttctccttgtgtaaagcaagagcagtaactgaccacagacagaaccg
cattgcctctctcaggatgctcccattcttggttcatgccagttaacctg
gcattaagaaacatggacggccagcagtcctgtgattgggctcagtggct
atctttgtgggctcataggttccaactgccattcaacctgtctagaaagc
aggacagtttctccacacttctttctactctctggagcccacaaagctct
ggggctctgtcactactgctcttgcccctgtgacctgtggacccacctac
ccaactccccaacttcatctcttgaggatgaagagccagcgggagcagga
tgaagatatagaaagagcacgcagttgtccaggtcacagaatgaggtgag
ctcattgtctgtccagggtccagatgaggatgacacctcatattcttcat
cttcatgcttgttcatcctcttcagatgcagctctaacctaacactctgg
tcctctgcccctggcatgtcactgagggaaaaccgtgggccagggccatc
ttcagtctcaggtatcatccaaggccacaactggaccgaaactgagtagc
agaactaatgcagggcaccaggacaaggcctccatgtcaacccttctcgg
gatgctttctacgaatggtctactaggagtctctgagctgagactctctc
tgtgatgtgcactacagccagcatgcatctgaagctggatactcttcaag
gtggaactagagaacaacagctagacaggc

gaattcatcagcttgcattggaagtagcatgtagaccctaaagagtggcg
acaacagggatttagtgtcatttcatttttaaccagtcagaagaatgatt
ttgacaattggtaaagcagtaaagaacaccaaaaagaagaaaaagtatcc
agtatgcaaagtttcaactaagagagcttcctgctccttgcctcttagag
cacaagcctcacatgacagattcacaaagctgagagttctgaaggctggc
atgtggctttagatggctataccatcccgcatcatcaaggtgattttgat
aaaggggtcaattgtgagtgaattcctgtgtaaccaggacctgagcagaa
actagagggcaggtccgggacattccagaatccaggctttacccaacggc
ctgtggtgaactctcggaatgagatgggaaggggcttaattcccacagac
catcccactagagcgcagatgtgggtggacttctcccccatcagtgagac
gcttctctagtccttgccttgccttgtccgaaagccagatccatcccagt
gacccaagtccaccctggtgtttaccttttcggagcacctagctaaggca
gggtttctaatccacctgtgtgggacaatcaatctgtcttcagatgttta
ggccatcgcatatcagcatcttacaaaatgtaataaagtagaagaataag
atgaacaagaaactatgtcatacaaacacaaattcaaaactgttaagtga
aatttctctagatgttcatcgttgtagattagttgatgttgtaacacaga
aattcaccatggtaacaactgacaaagctctcaccttggtggagttctca
cagtgacacaggcaaaccactgacattccaacacgagagtatctgaggaa
tcctcacatgctggtccttacgtaagccctgaaaccacatctgctttcca
tttctgaaatatcattgcagaatatttgtcgtctagctcagaattatgca
gaaaaggaaataagacattcaaactagaagtacattgggtcagttttttt
ttttttttgtgtgatggatgttccttcacaaacaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_8481027_8482277
seq2: B6Ng01-083A03.b_45_1274

seq1  GAATTCCTATACCATGCCAGAAACTCGAGTTTAAAAATGATGGATAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATACCATGCCAGAAACTCGAGTTTAAAAATGATGGATAAGGG  50

seq1  TTTGGCATGGGCACACATCTTTAACGCAAGAATTTGGGAAATAGAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATGGGCACACATCTTTAACGCAAGAATTTGGGAAATAGAGGAAG  100

seq1  AATCTGTCAGTTTGAAGCCAGCCTGGTCTACAAAGAGTTCAGACCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTCAGTTTGAAGCCAGCCTGGTCTACAAAGAGTTCAGACCAGAGA  150

seq1  AGGATACATAGGGAGACCTTGTTTAAACATCACACACACACTCACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACATAGGGAGACCTTGTTTAAACATCACACACACACTCACACACA  200

seq1  CACACACACACACACACACACACACACACACGGCAGGGGGTCTTCTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACGGCAGGGGGTCTTCTACAT  250

seq1  CGCACATCCCCCTATAAACAGGTGCTGTGCAGTGTGCAGCTCCAGGGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACATCCCCCTATAAACAGGTGCTGTGCAGTGTGCAGCTCCAGGGACT  300

seq1  AGAAATGAGACATAAGCTCTGTGATCAGGTTACTCAAGTCCTAGGCAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAGACATAAGCTCTGTGATCAGGTTACTCAAGTCCTAGGCAGAC  350

seq1  CATCTACAATCAACAAAACACATCACGATATGTCCTTCCAATTTAGCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACAATCAACAAAACACATCACGATATGTCCTTCCAATTTAGCTAC  400

seq1  AACCAGATATCAGGACGAGAGAAACCTGGCTATAATCGGCATTTGTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGATATCAGGACGAGAGAAACCTGGCTATAATCGGCATTTGTAGTT  450

seq1  TACTTCTCCTTGTGTAAAGCAAGAGCAGTAACTGACCACAGACAGAACCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTCCTTGTGTAAAGCAAGAGCAGTAACTGACCACAGACAGAACCG  500

seq1  CATTGCCTCTCTCAGGATGCTCCCATTCTTGGTTCATGCCAGTTAACCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCTCTCTCAGGATGCTCCCATTCTTGGTTCATGCCAGTTAACCTG  550

seq1  GCATTAAGAAACATGGACGGCCAGCAGTCCTGTGATTGGGCTCAGTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAGAAACATGGACGGCCAGCAGTCCTGTGATTGGGCTCAGTGGCT  600

seq1  ATCTTTGTGGGCTCATAGGTTCCAACTGCCATTCAACCTGTCTAGAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTGGGCTCATAGGTTCCAACTGCCATTCAACCTGTCTAGAAAGC  650

seq1  AGGACAGTTTCTCCACACTTCTTTCTACTCTCTGGAGCCCACAAAGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGTTTCTCCACACTTCTTTCTACTCTCTGGAGCCCACAAAGCTCT  700

seq1  GGGGCTCTGTCACTACTGCTCTTGCCCCTGTGACCTGTGGACCCACCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCTGTCACTACTGCTCTTGCCCCTGTGACCTGTGGACCCACCTAC  750

seq1  CCAACTCCCCAACTTCATCTCTTGAGGATGAAGAGCCAGCGGGAGCAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCCCCAACTTCATCTCTTGAGGATGAAGAGCCAGCGGGAGCAGGA  800

seq1  TGAAGATATAGAAAGAGCAGGCAGTTGTCCAGGTCACAGAATGAGGTGAG  850
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGAAGATATAGAAAGAGCACGCAGTTGTCCAGGTCACAGAATGAGGTGAG  850

seq1  CTCATTGTCTGTCCAGGGTCCAGATGAGGATGACACCTCATATTCTTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGTCTGTCCAGGGTCCAGATGAGGATGACACCTCATATTCTTCAT  900

seq1  CTTCATGCTTGTTCATCCTCTTCAGATGCAGCTCTAACCTAACACTCTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGCTTGTTCATCCTCTTCAGATGCAGCTCTAACCTAACACTCTGG  950

seq1  TCCTCTGCCCCCTGGCATGTCACTGAGGGAAACACCGTGGGCCAGGGCCA  1000
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  TCCTCTG-CCCCTGGCATGTCACTGAGGGAAA-ACCGTGGGCCAGGGCCA  998

seq1  TCTTCAGTCTCAGGATATCCATCCAAGGCCACAAACTGGACCGAAAACTG  1050
      |||||||||||||| ||| ||||||||||||| |||||||||| ||||||
seq2  TCTTCAGTCTCAGG-TAT-CATCCAAGGCCAC-AACTGGACCG-AAACTG  1044

seq1  AGTAGCAGACACTAATGCAGGGCACCAGGACAAGGGCCCTCCCAGTGTCA  1100
      ||||||||| |||||||||||||||||||||||||  |||||   |||||
seq2  AGTAGCAGA-ACTAATGCAGGGCACCAGGACAAGG--CCTCC--ATGTCA  1089

seq1  ACCCTTCCTCGGGTATGC-TTCTACGGATGGTTCTACTCAGGAGTCTCTG  1149
      |||||| |||||| |||| ||||||| |||| |||||| |||||||||||
seq2  ACCCTT-CTCGGG-ATGCTTTCTACGAATGG-TCTACT-AGGAGTCTCTG  1135

seq1  AGCTGAGGCACCTCCTTCTGTGAATGTGCACCTACCAGCCAAGGCATGGC  1199
      |||||||    |||  |||||| ||||||| ||| ||||||  |||| ||
seq2  AGCTGAG---ACTCTCTCTGTG-ATGTGCA-CTA-CAGCCA--GCAT-GC  1176

seq1  ATCATGGAGGCTGAGTACTCTTCAGAAGGGTGGAGACTAGAGGAC-----  1244
      |||   || ||||  ||||||||   | |||||| ||||||| ||     
seq2  ATC--TGAAGCTGGATACTCTTC---AAGGTGGA-ACTAGAGAACAACAG  1220

seq1  ---GACAGGC  1251
         |||||||
seq2  CTAGACAGGC  1230


seq1: chr11_8609600_8610691
seq2: B6Ng01-083A03.g_66_1153 (reverse)

seq1  TTGTT-TTTGTGAAGGAACATTCATCACAC-AAAAAAAAAAAAAACTGA-  47
      ||||| ||||||||||||||| |||||||| |||||||||||||||||| 
seq2  TTGTTGTTTGTGAAGGAACATCCATCACACAAAAAAAAAAAAAAACTGAC  50

seq1  CCAATGTACTTTCTAGTTTGAATGTCTTATTTCCTTTTCTTGCATAATTT  97
      ||||||||| ||||||||||||||||||||||||||||| ||||||| ||
seq2  CCAATGTAC-TTCTAGTTTGAATGTCTTATTTCCTTTTC-TGCATAA-TT  97

seq1  CTGAGGCTAGACGACAATATTTCTGCAATGATAATTTCAGAAATGGAAAG  147
      |||| ||||||||||||   |||||||||||| |||||||||||||||||
seq2  CTGA-GCTAGACGACAAATATTCTGCAATGAT-ATTTCAGAAATGGAAAG  145

seq1  CAGATTGTGGTTTTCAGGGCTTACGTAAGGACCAGCATGTGAGGATTCCT  197
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAGA-TGTGG-TTTCAGGGCTTACGTAAGGACCAGCATGTGAGGATTCCT  193

seq1  CAGATACTCTCGTGTTGGAATGTCAGTGGTTTGCCTGTGTCACTGTGAGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACTCTCGTGTTGGAATGTCAGTGGTTTGCCTGTGTCACTGTGAGA  243

seq1  ACTCCACCAAGGTGAGAGCTTTGTCAGTTGTTACCATGGTGAATTTCTGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACCAAGGTGAGAGCTTTGTCAGTTGTTACCATGGTGAATTTCTGT  293

seq1  GTTACAACATCAACTAATCTACAACGATGAACATCTAGAGAAATTTCACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAACATCAACTAATCTACAACGATGAACATCTAGAGAAATTTCACT  343

seq1  TAACAGTTTTGAATTTGTGTTTGTATGACATAGTTTCTTGTTCATCTTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTTTTGAATTTGTGTTTGTATGACATAGTTTCTTGTTCATCTTAT  393

seq1  TCTTCTACTTTATTACATTTTGTAAGATGCTGATATGCGATGGCCTAAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACTTTATTACATTTTGTAAGATGCTGATATGCGATGGCCTAAAC  443

seq1  ATCTGAAGACAGATTGATTGTCCCACACAGGTGGATTAGAAACCCTGCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGACAGATTGATTGTCCCACACAGGTGGATTAGAAACCCTGCCT  493

seq1  TAGCTAGGTGCTCCGAAAAGGTAAACACCAGGGTGGACTTGGGTCACTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGGTGCTCCGAAAAGGTAAACACCAGGGTGGACTTGGGTCACTGG  543

seq1  GATGGATCTGGCTTTCGGACAAGGCAAGGCAAGGACTAGAGAAGCGTCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATCTGGCTTTCGGACAAGGCAAGGCAAGGACTAGAGAAGCGTCTC  593

seq1  ACTGATGGGGGAGAAGTCCACCCACATCTGCGCTCTAGTGGGATGGTCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGGGGGAGAAGTCCACCCACATCTGCGCTCTAGTGGGATGGTCTG  643

seq1  TGGGAATTAAGCCCCTTCCCATCTCATTCCGAGAGTTCACCACAGGCCGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTAAGCCCCTTCCCATCTCATTCCGAGAGTTCACCACAGGCCGT  693

seq1  TGGGTAAAGCCTGGATTCTGGAATGTCCCGGACCTGCCCTCTAGTTTCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAAGCCTGGATTCTGGAATGTCCCGGACCTGCCCTCTAGTTTCTG  743

seq1  CTCAGGTCCTGGTTACACAGGAATTCACTCACAATTGACCCCTTTATCAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTCCTGGTTACACAGGAATTCACTCACAATTGACCCCTTTATCAA  793

seq1  AATCACCTTGATGATGCGGGATGGTATAGCCATCTAAAGCCACATGCCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCTTGATGATGCGGGATGGTATAGCCATCTAAAGCCACATGCCAG  843

seq1  CCTTCAGAACTCTCAGCTTTGTGAATCTGTCATGTGAGGCTTGTGCTCTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGAACTCTCAGCTTTGTGAATCTGTCATGTGAGGCTTGTGCTCTA  893

seq1  AGAGGCAAGGAGCAGGAAGCTCTCTTAGTTGAAACTTTGCATACTGGATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAAGGAGCAGGAAGCTCTCTTAGTTGAAACTTTGCATACTGGATA  943

seq1  CTTTTTCTTCTTTTTGGTGTTCTTTACTGCTTTACCAATTGTCAAAATCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTCTTTTTGGTGTTCTTTACTGCTTTACCAATTGTCAAAATCA  993

seq1  TTCTTCTGACTGGTTAAAAATGAAATGACACTAAATCCCTGTTGTCGCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGACTGGTTAAAAATGAAATGACACTAAATCCCTGTTGTCGCCA  1043

seq1  CTCTTTAGGGTCTACATGCTACTTCCAATGCAAGCTGATGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAGGGTCTACATGCTACTTCCAATGCAAGCTGATGAATTC  1088


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