BAC Information

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BAC

Clone NameB6Ng01-083D24
Chromosome11 (Build37)
Map Location 31,777,399 - 31,907,896
singlet/doubletdoublet
Overlap geneCpeb4, 4930524B15Rik, Nsg2
Upstream genePsme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2, 2310022M17Rik
Downstream geneLOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083D24.bB6Ng01-083D24.g
ACCDH897566DH897567
length1,150379
definitionDH897566|Mus musculus domesticus DNA, BAC clone: B6Ng01-083D24, 5' end.DH897567|Mus musculus domesticus DNA, BAC clone: B6Ng01-083D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,906,729 - 31,907,896)(31,777,399 - 31,777,783)
sequence
gaattccagagaggctgaacaacctacacgaagtctcacagaaaataagc
agcttagcaaagatttgaacccaggtctccgggattataaagagtatgtg
ctgtaccataaatttcaggtcagatgccaatagttgatttcagaatatct
ctattcctctcctcttaaatgtggttgaggctccttcttcatgaagattt
aacagttagtggaaaataaaagagtgtggctggagcctggagctgactca
gcaagctttgattgtgactgtgattgacatggggctttgctgaggtgggg
gtatctttctgtgctctgctttctacagccctgacatgcacttgatggca
tctccaggatatctacatgtagagttcagctgccattttctttgggtgag
tactgagacaataggtctattctctgaacccacttctgcatttgcaaagt
gggaatcatgggtagaaaacctcacagcattttccagagcacctgtttct
ttatggtgagaaggctccagaggtagaattggatgtcccaactgtctttg
ttatttttctatcactatgaagagacaccatgatcaaggcaacatataga
acagagaatttattagggcttacagtttcagagggtgagtccatgattat
tatgttttggagcatggtggcaggtaggcaggctagagcagtagctaaga
ggattttttcttgatctacaagcaggaggcagagagtggactgactgaga
atggtgtggacttttgaaactgtgacacaccccctccaacaaaggccaca
cttcctgatccttcctaaacagttccaccaactagaacccaagcattcaa
atctatgagcctacgggagccactctcaatcaaacgccacaccaaccttt
cagagatcctactcatgactcggaagacacttgcctgtttggtttgagtc
tattttcccacacattgattcttaaacacagaagaggagatcctataaaa
atttcctctctactgtgtggtagactaagctgctcatgcagtgaccaatg
ggactccagatctactcctcctgaattaacccctccctcttacacagccc
tactgatgctccctttcatctcaatctctaagtctcctacttctagcatc

agtactttacttaggactctgtttgctcttacttcagacacattgctttg
ttaagttttctaaattacacaagtaattcttgtcactataataacttacc
tggtgttgtcagcttagtatccttaaaattatgtctcacactgtgtgctt
agaaacaaggttactgcagtgctttaggtcaaccagacttggtgaattat
taaaaatcataataacatataacctcattccattttatttttttcttaat
gtgactccagagaggggttttttttggtggtggtggtgtttgtttgctag
cacgcataggaaatctcttgtttgacttagacagaaaccaattttgtaat
tgggtaatatgtgctggatggggaaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_31906729_31907896
seq2: B6Ng01-083D24.b_46_1195 (reverse)

seq1  GATGCTAGAAGATAGGGAGACTTAGGAGA-TGAGAGTGAGAAGGGGAGCA  49
      ||||||||||| || ||||||||| |||| |||||    ||| |||||||
seq2  GATGCTAGAAG-TA-GGAGACTTA-GAGATTGAGA---TGAAAGGGAGCA  44

seq1  TCAGGTAGGGCTGTGTAAGAGGGAGGGGTTTAATTCAGGAAGGGAGTAGG  99
      ||| |||||||||||||||||||||||| |||||||||||  |||||| |
seq2  TCA-GTAGGGCTGTGTAAGAGGGAGGGG-TTAATTCAGGA--GGAGTA-G  89

seq1  ATCTGGAGTCCCATTGGGTCACTGGCATGAGCAGCCTTAGTCCTACCACA  149
      ||||||||||||||| ||||||| |||||||||| |||||| ||||||||
seq2  ATCTGGAGTCCCATT-GGTCACT-GCATGAGCAG-CTTAGT-CTACCACA  135

seq1  CAGTAGGAGAAGGAAATTTTTAATAGGATCTCCTCTTCTGTGTTTAAGAA  199
      ||||| ||| ||||||||||| ||||||||||||||||||||||||||||
seq2  CAGTA-GAG-AGGAAATTTTT-ATAGGATCTCCTCTTCTGTGTTTAAGAA  182

seq1  TCAATGTGTGGGAAAATAGACTCAAAACCAAACAGGCAAGTGTCTTCCGA  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCAATGTGTGGGAAAATAGACTC-AAACCAAACAGGCAAGTGTCTTCCGA  231

seq1  GTCATGAGTAGGATCTCCTGAAAGGTTGGTGTGGCGTTTGATTGAGAGTG  299
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTCATGAGTAGGATCT-CTGAAAGGTTGGTGTGGCGTTTGATTGAGAGTG  280

seq1  GCTCCCGTAGGCTCATAGATTTGAATGCTTGGGTTCTAGTTGGTGGAACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCGTAGGCTCATAGATTTGAATGCTTGGGTTCTAGTTGGTGGAACT  330

seq1  GTTTAGGAAGGATCAGGAAGTGTGGCC-TTGTTGGAGGGGGTGTGTCACA  398
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTTTAGGAAGGATCAGGAAGTGTGGCCTTTGTTGGAGGGGGTGTGTCACA  380

seq1  GTTTCAAAAGTCCACACCATTCTCAGTCAGTCCACTCTCTGCCTCCTGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAAAGTCCACACCATTCTCAGTCAGTCCACTCTCTGCCTCCTGCT  430

seq1  TGTAGATCAAGAAAAAATCCTCTTAGCTACTGCTCTAGCCTGCCTACCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATCAAGAAAAAATCCTCTTAGCTACTGCTCTAGCCTGCCTACCTG  480

seq1  CCACCATGCTCCAAAACATAATAATCATGGACTCACCCTCTGAAACTGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGCTCCAAAACATAATAATCATGGACTCACCCTCTGAAACTGTA  530

seq1  AGCCCTAATAAATTCTCTGTTCTATATGTTGCCTTGATCATGGTGTCTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAATAAATTCTCTGTTCTATATGTTGCCTTGATCATGGTGTCTCT  580

seq1  TCATAGTGATAGAAAAATAACAAAGACAGTTGGGACATCCAATTCTACCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTGATAGAAAAATAACAAAGACAGTTGGGACATCCAATTCTACCT  630

seq1  CTGGAGCCTTCTCACCATAAAGAAACAGGTGCTCTGGAAAATGCTGTGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCTTCTCACCATAAAGAAACAGGTGCTCTGGAAAATGCTGTGAG  680

seq1  GTTTTCTACCCATGATTCCCACTTTGCAAATGCAGAAGTGGGTTCAGAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTACCCATGATTCCCACTTTGCAAATGCAGAAGTGGGTTCAGAGA  730

seq1  ATAGACCTATTGTCTCAGTACTCACCCAAAGAAAATGGCAGCTGAACTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCTATTGTCTCAGTACTCACCCAAAGAAAATGGCAGCTGAACTCT  780

seq1  ACATGTAGATATCCTGGAGATGCCATCAAGTGCATGTCAGGGCTGTAGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAGATATCCTGGAGATGCCATCAAGTGCATGTCAGGGCTGTAGAA  830

seq1  AGCAGAGCACAGAAAGATACCCCCACCTCAGCAAAGCCCCATGTCAATCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCACAGAAAGATACCCCCACCTCAGCAAAGCCCCATGTCAATCA  880

seq1  CAGTCACAATCAAAGCTTGCTGAGTCAGCTCCAGGCTCCAGCCACACTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACAATCAAAGCTTGCTGAGTCAGCTCCAGGCTCCAGCCACACTCT  930

seq1  TTTATTTTCCACTAACTGTTAAATCTTCATGAAGAAGGAGCCTCAACCAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCCACTAACTGTTAAATCTTCATGAAGAAGGAGCCTCAACCAC  980

seq1  ATTTAAGAGGAGAGGAATAGAGATATTCTGAAATCAACTATTGGCATCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGAGGAGAGGAATAGAGATATTCTGAAATCAACTATTGGCATCTG  1030

seq1  ACCTGAAATTTATGGTACAGCACATACTCTTTATAATCCCGGAGACCTGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAATTTATGGTACAGCACATACTCTTTATAATCCCGGAGACCTGG  1080

seq1  GTTCAAATCTTTGCTAAGCTGCTTATTTTCTGTGAGACTTCGTGTAGGTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATCTTTGCTAAGCTGCTTATTTTCTGTGAGACTTCGTGTAGGTT  1130

seq1  GTTCAGCCTCTCTGGAATTC  1168
      ||||||||||||||||||||
seq2  GTTCAGCCTCTCTGGAATTC  1150

seq1: chr11_31777399_31777783
seq2: B6Ng01-083D24.g_67_451

seq1  GAATTCAGTACTTTACTTAGGACTCTGTTTGCTCTTACTTCAGACACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACTTTACTTAGGACTCTGTTTGCTCTTACTTCAGACACATT  50

seq1  GCTTTGTTAAGTTTTCTAAATTACACAAGTAATTCTTGTCACTATAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTAAGTTTTCTAAATTACACAAGTAATTCTTGTCACTATAATAA  100

seq1  CTTACCTGGTGTTGTCAGCTTAGTATCCTTAAAATTATGTCTCACACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTGGTGTTGTCAGCTTAGTATCCTTAAAATTATGTCTCACACTGT  150

seq1  GTGCTTAGAAACAAGGTTACTGCAGTGCTTTAGGTCAACCAGACTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAGAAACAAGGTTACTGCAGTGCTTTAGGTCAACCAGACTTGGTG  200

seq1  AATTATTAAAAATCATAATAACATATAACCTCATTCCATTTTATTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTAAAAATCATAATAACATATAACCTCATTCCATTTTATTTTTTT  250

seq1  CTTAATGTGACTCCAGAGAGGGGTTTTTTTTGGTGGTGGTGGTGTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGTGACTCCAGAGAGGGGTTTTTTTTGGTGGTGGTGGTGTTTGTT  300

seq1  TGCTTGCTTGCATAGGAAATCTCTTGTTTGACTTAGAGAGAAACCAATTT  350
      |||| ||  |||||||||||||||||||||||||||| ||||||||||||
seq2  TGCTAGCACGCATAGGAAATCTCTTGTTTGACTTAGACAGAAACCAATTT  350

seq1  TGTAATTGGGAAATATGTGCTGGATGGGGAAAATC  385
      |||||||||| ||||||||||||||||||||||||
seq2  TGTAATTGGGTAATATGTGCTGGATGGGGAAAATC  385