BAC Information

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BAC

Clone NameB6Ng01-083F19
Chromosome11 (Build37)
Map Location 77,244,041 - 77,419,962
singlet/doubletdoublet
Overlap geneSsh2, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1
Upstream geneAbr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108, LOC544800
Downstream geneLOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083F19.bB6Ng01-083F19.g
ACCDH897646DH897647
length1,1921,110
definitionDH897646|Mus musculus domesticus DNA, BAC clone: B6Ng01-083F19, 5' end.DH897647|Mus musculus domesticus DNA, BAC clone: B6Ng01-083F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,244,041 - 77,245,232)(77,418,839 - 77,419,962)
sequence
gaattcaaaaaccttggctgtcatcctgtgtcttccatttgccctcttaa
cactagataaattgttcaccagtaggtttcgtgacatgtcccttgaagat
gagaccctggttgcagctgaaaacactgactctgccttatctgcagaagt
tcacttaatttccttggtagtgagacacagtctttgacaaagtaccattc
tgtaaatttaaaagagctatcattctagaaaaccaatatatgatatttag
tatgagatctgagatttgacataccctgcttgccaagtcattataatcaa
attgtatgtacatatacactagaccgtaatcctcgctggagagaagactc
atccatctcattgcttcttctgttaagatgttttataagacattaaatct
gtgttcattaatgggttaccatgtgatgtctgggtacatatacttaatgt
tttaaatcaagtttgtcatctggaacatgtttcaattctttttttaataa
gttattttttatgtgtataggtattttgcctgcatgtatatcagattcct
ctgggactggggttacagatagtggtgagctgctatgctgggaattgaac
ctgaactctctgaaagagcagccagtgctcttaatcattaagccatctct
tccacctccatctatcaattctctatggtgaaaactcttcaaaatatttt
cttcttgctttttgaaatgtacaggatgtagctatccacagtcatcctac
tgtggaatatgagtcatcatttactctgagaaggctaaactacaaagtgc
aactgactcttcgtctttaaaaccagaatagccgggcagtggtggtgcac
gcctttaatcccagcacttgagaggcagaggcaggcggatttctgagttc
gaggccagcctggtctacagagtgagttccaggacagccagggctacacc
aaaaacaaaactcttgtctcaaaaaaaaagagagagagaggttgattgga
tatacaggcatcctatttaagtcttatttcctcaaattgagagactccta
gcattagtttgtgtctttattcacaagaactggtgtataactgacccctg
ctaatgcctttatgtttatttccaaagcacaagtttaacattaaggtcat
ttcaggttggcagaatggctcaccaggtagagcactgactgc
gaattcctggatgaactgttaaagggtcccctttggcttttgtagttctt
tgagaattattagaaattattacattgaaactcatataatcagacgtttg
cctcgggctgtgactttttaaggttaataatattttgcatgacattgata
cagaaagtctctgaaaattgttacaaactttcatgtagcagatattcctt
cttaaggaaatgtaaggtgatgcacccaattctgttatgatctgtgttct
gtactcatttttttcttttttgcttcatgtcatcctaattttaaaagaaa
ccatcttgtcttggcagtagtacttgttgatttttgtggttagtagaagc
agaaataacagttttagcattctggtaagtgccttttgaaacaaaaactt
agccttcaagtcctgaagaagtcttgatatatactttttactttttctct
catctttagcagactcttgaagtataatcctcccggatttataggtaggg
actctgtattcatactgccttgaacttagcagttctgcctctcaccctct
tttgtgctggaattacaggtgaagtctccacacctgggtccatttttttt
taaattgtttagatttactagtgaagtgttttaaaactgttctatatgtg
aatattagcagtaataaagattgctaaactatgctaattatcttgatatt
ttattaacatcaaattttgtgtctagctttacttaatatgttattttaaa
attatgaatacaagtattaaagatatagcagtactgctaggcattgactt
aagttctttctttctcatgtagcccaggctagtgtaactgttggttgctg
aggatgactgtaaactcctgataactctgtctccaacctccaagtgctag
aattacagtgtgtgccttcatattccagtttaaacttttttttttttttt
gaacagcatctcactatactgtgtattcagtgctgagtgagttctctgct
tgctgcacttgctttgtaagcagttgctcaattcacaagaaatctgcctt
gttccttgctgtgtgctgggaataaattgtgtggccacaagctgtctaat
tctttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_77244041_77245232
seq2: B6Ng01-083F19.b_45_1236

seq1  GAATTCAAAAACCTTGGCTGTCATCCTGTGTCTTCCATTTGCCCTCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAACCTTGGCTGTCATCCTGTGTCTTCCATTTGCCCTCTTAA  50

seq1  CACTAGATAAATTGTTCACCAGTAGGTTTCGTGACATGTCCCTTGAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGATAAATTGTTCACCAGTAGGTTTCGTGACATGTCCCTTGAAGAT  100

seq1  GAGACCCTGGTTGCAGCTGAAAACACTGACTCTGCCTTATCTGCAGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCTGGTTGCAGCTGAAAACACTGACTCTGCCTTATCTGCAGAAGT  150

seq1  TCACTTAATTTCCTTGGTAGTGAGACACAGTCTTTGACAAAGTACCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAATTTCCTTGGTAGTGAGACACAGTCTTTGACAAAGTACCATTC  200

seq1  TGTAAATTTAAAAGAGCTATCATTCTAGAAAACCAATATATGATATTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTTAAAAGAGCTATCATTCTAGAAAACCAATATATGATATTTAG  250

seq1  TATGAGATCTGAGATTTGACATACCCTGCTTGCCAAGTCATTATAATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGATCTGAGATTTGACATACCCTGCTTGCCAAGTCATTATAATCAA  300

seq1  ATTGTATGTACATATACACTAGACCGTAATCCTCGCTGGAGAGAAGACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGTACATATACACTAGACCGTAATCCTCGCTGGAGAGAAGACTC  350

seq1  ATCCATCTCATTGCTTCTTCTGTTAAGATGTTTTATAAGACATTAAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTCATTGCTTCTTCTGTTAAGATGTTTTATAAGACATTAAATCT  400

seq1  GTGTTCATTAATGGGTTACCATGTGATGTCTGGGTACATATACTTAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATTAATGGGTTACCATGTGATGTCTGGGTACATATACTTAATGT  450

seq1  TTTAAATCAAGTTTGTCATCTGGAACATGTTTCAATTCTTTTTTTAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCAAGTTTGTCATCTGGAACATGTTTCAATTCTTTTTTTAATAA  500

seq1  GTTATTTTTTATGTGTATAGGTATTTTGCCTGCATGTATATCAGATTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTTTATGTGTATAGGTATTTTGCCTGCATGTATATCAGATTCCT  550

seq1  CTGGGACTGGGGTTACAGATAGTGGTGAGCTGCTATGCTGGGAATTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTGGGGTTACAGATAGTGGTGAGCTGCTATGCTGGGAATTGAAC  600

seq1  CTGAACTCTCTGAAAGAGCAGCCAGTGCTCTTAATCATTAAGCCATCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTCTCTGAAAGAGCAGCCAGTGCTCTTAATCATTAAGCCATCTCT  650

seq1  TCCACCTCCATCTATCAATTCTCTATGGTGAAAACTCTTCAAAATATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCCATCTATCAATTCTCTATGGTGAAAACTCTTCAAAATATTTT  700

seq1  CTTCTTGCTTTTTGAAATGTACAGGATGTAGCTATCCACAGTCATCCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCTTTTTGAAATGTACAGGATGTAGCTATCCACAGTCATCCTAC  750

seq1  TGTGGAATATGAGTCATCATTTACTCTGAGAAGGCTAAACTACAAAGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATATGAGTCATCATTTACTCTGAGAAGGCTAAACTACAAAGTGC  800

seq1  AACTGACTCTTCGTCTTTAAAACCAGAATAGCCGGGCAGTGGTGGTGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACTCTTCGTCTTTAAAACCAGAATAGCCGGGCAGTGGTGGTGCAC  850

seq1  GCCTTTAATCCCAGCACTTGAGAGGCAGAGGCAGGCGGATTTCTGAGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCAGCACTTGAGAGGCAGAGGCAGGCGGATTTCTGAGTTC  900

seq1  GAGGCCAGCCTGGTCTACAGAGTGAGTTCCCAGGACAGCCAGGGCTACAC  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAGGCCAGCCTGGTCTACAGAGTGAGTT-CCAGGACAGCCAGGGCTACAC  949

seq1  CAAAAACAAAACTCTTGTCTCAAAAAAAAAAGGAGAGAGAGAGGTTGATT  1000
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  CAAAAACAAAACTCTTGTCTCAAAAAAAAA--GAGAGAGAGAGGTTGATT  997

seq1  GGATATACAGGCAT-CTATTTAGGTCTTATTT-CTCAAATTGAGAGACTC  1048
      |||||||||||||| ||||||| ||||||||| |||||||||||||||||
seq2  GGATATACAGGCATCCTATTTAAGTCTTATTTCCTCAAATTGAGAGACTC  1047

seq1  TTAAGCATTAGTTTGTGTCTTTATTCACAAG-ACT-GTGTAT-ACTGACC  1095
       | |||||||||||||||||||||||||||| ||| |||||| |||||||
seq2  CT-AGCATTAGTTTGTGTCTTTATTCACAAGAACTGGTGTATAACTGACC  1096

seq1  CCTGCTAGTG-CTTTATG-TTATTT-CAAAGCACAAGTTTTAACATTAAG  1142
      ||||||| || ||||||| |||||| ||||||||||| ||||||||||||
seq2  CCTGCTAATGCCTTTATGTTTATTTCCAAAGCACAAG-TTTAACATTAAG  1145

seq1  GTCATTTTCAGGGTGGCAAGATGGCTCAGCAGGTAAGAGCAACTGACTGC  1192
      |||| ||||||| |||||  |||||||| ||||| ||||| |||||||||
seq2  GTCA-TTTCAGGTTGGCAGAATGGCTCACCAGGT-AGAGC-ACTGACTGC  1192

seq1: chr11_77418839_77419962
seq2: B6Ng01-083F19.g_67_1176 (reverse)

seq1  AAAAAAAAGAATTTAGGACAGGCATAGTGGCCCACAC-ATTTAATCCCAG  49
      |||||||||||||   |||||   | |||| |||||| ||||| ||||||
seq2  AAAAAAAAGAATT--AGACAG--CTTGTGG-CCACACAATTTATTCCCAG  45

seq1  CACACAGCA--GAGACAGGCAGATTTCTTGTGAATTTGAGGCCAACCTGG  97
      |||||||||  ||   |||||||||||||||||| |||||  ||||   |
seq2  CACACAGCAAGGAACAAGGCAGATTTCTTGTGAA-TTGAG--CAAC--TG  90

seq1  CCTACATACCAAGTTGCAGGCCAGCCAGAGAACTCACTCAGCACTGAATA  147
      | |||| | |||| |||||  ||  |||||||||||||||||||||||||
seq2  CTTACAAAGCAAG-TGCAG--CAAGCAGAGAACTCACTCAGCACTGAATA  137

seq1  CACAGTATAGTGAGATGCTGTTTCAAAAAAAAAAAAAAAAGTTTAAACTG  197
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  CACAGTATAGTGAGATGCTGTT--CAAAAAAAAAAAAAAAGTTTAAACTG  185

seq1  GAATATGAAGGCACACACCTGTAATTCTAGCACTTGGGAGGTTGGAGACA  247
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  GAATATGAAGGCACACA-CTGTAATTCTAGCACTT-GGAGGTTGGAGACA  233

seq1  GAGTTATCAGGAGTTTACAGTCATCCTCAGCAACCAACAGTTACACTAGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATCAGGAGTTTACAGTCATCCTCAGCAACCAACAGTTACACTAGC  283

seq1  CTGGGCTACATGAGAAAGAAAGAACTTAAGTCAATGCCTAGCAGTACTGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTACATGAGAAAGAAAGAACTTAAGTCAATGCCTAGCAGTACTGC  333

seq1  TATATCTTTAATACTTGTATTCATAATTTTAAAATAACATATTAAGTAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTTAATACTTGTATTCATAATTTTAAAATAACATATTAAGTAAA  383

seq1  GCTAGACACAAAATTTGATGTTAATAAAATATCAAGATAATTAGCATAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACACAAAATTTGATGTTAATAAAATATCAAGATAATTAGCATAGT  433

seq1  TTAGCAATCTTTATTACTGCTAATATTCACATATAGAACAGTTTTAAAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATCTTTATTACTGCTAATATTCACATATAGAACAGTTTTAAAAC  483

seq1  ACTTCACTAGTAAATCTAAACAATTTAAAAAAAAATGGACCCAGGTGTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACTAGTAAATCTAAACAATTTAAAAAAAAATGGACCCAGGTGTGG  533

seq1  AGACTTCACCTGTAATTCCAGCACAAAAGAGGGTGAGAGGCAGAACTGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCACCTGTAATTCCAGCACAAAAGAGGGTGAGAGGCAGAACTGCT  583

seq1  AAGTTCAAGGCAGTATGAATACAGAGTCCCTACCTATAAATCCGGGAGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAAGGCAGTATGAATACAGAGTCCCTACCTATAAATCCGGGAGGA  633

seq1  TTATACTTCAAGAGTCTGCTAAAGATGAGAGAAAAAGTAAAAAGTATATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTTCAAGAGTCTGCTAAAGATGAGAGAAAAAGTAAAAAGTATATA  683

seq1  TCAAGACTTCTTCAGGACTTGAAGGCTAAGTTTTTGTTTCAAAAGGCACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACTTCTTCAGGACTTGAAGGCTAAGTTTTTGTTTCAAAAGGCACT  733

seq1  TACCAGAATGCTAAAACTGTTATTTCTGCTTCTACTAACCACAAAAATCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAATGCTAAAACTGTTATTTCTGCTTCTACTAACCACAAAAATCA  783

seq1  ACAAGTACTACTGCCAAGACAAGATGGTTTCTTTTAAAATTAGGATGACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTACTACTGCCAAGACAAGATGGTTTCTTTTAAAATTAGGATGACA  833

seq1  TGAAGCAAAAAAGAAAAAAATGAGTACAGAACACAGATCATAACAGAATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAAAAAAGAAAAAAATGAGTACAGAACACAGATCATAACAGAATT  883

seq1  GGGTGCATCACCTTACATTTCCTTAAGAAGGAATATCTGCTACATGAAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCATCACCTTACATTTCCTTAAGAAGGAATATCTGCTACATGAAAG  933

seq1  TTTGTAACAATTTTCAGAGACTTTCTGTATCAATGTCATGCAAAATATTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAACAATTTTCAGAGACTTTCTGTATCAATGTCATGCAAAATATTA  983

seq1  TTAACCTTAAAAAGTCACAGCCCGAGGCAAACGTCTGATTATATGAGTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTTAAAAAGTCACAGCCCGAGGCAAACGTCTGATTATATGAGTTT  1033

seq1  CAATGTAATAATTTCTAATAATTCTCAAAGAACTACAAAAGCCAAAGGGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAATAATTTCTAATAATTCTCAAAGAACTACAAAAGCCAAAGGGG  1083

seq1  ACCCTTTAACAGTTCATCCAGGAATTC  1124
      |||||||||||||||||||||||||||
seq2  ACCCTTTAACAGTTCATCCAGGAATTC  1110