BAC Information

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BAC

Clone NameB6Ng01-083G05
Chromosome11 (Build37)
Map Location 106,256,839 - 106,381,795
singlet/doubletdoublet
Overlap geneErn1, LOC100041277, Tex2
Upstream geneRnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2
Downstream genePecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083G05.bB6Ng01-083G05.g
ACCDH897666DH897667
length1,1391,154
definitionDH897666|Mus musculus domesticus DNA, BAC clone: B6Ng01-083G05, 5' end.DH897667|Mus musculus domesticus DNA, BAC clone: B6Ng01-083G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,380,636 - 106,381,795)(106,256,839 - 106,258,006)
sequence
gaattcactgtgaccccccagagtagccactgtggccactgccctgcatg
caaaccaccagtcgtccctctcatggtctgagggcggagggccttaccct
ttccatgcctccattgttagtacaaatcacgtgtgggctttactctaatg
ccagcttaaagacgctgaagggtttattttgtgtgcctgtgtgcaccaca
tgcatgcctggtgtcctcagaggtcgaaagagggcgtcagatcccttgaa
actggagttagataatgactgcagtccatcattcgggtgctgggagctga
actctgctgcagagtagcaagtgctcttcaccactgaaatatctttctag
tcctggaagtacccgtttggatactgtaatttagattcatatttcttggg
aggcaaaaagaaaaaacgaaaatcaaaacaaaccctttttttgtttgttt
gttaactgtctctctaggactctggatcgatttggaaatgtcttacaatg
ggtcctttctgatgactctggaaaccaaaatgaacttgaccaaactaggt
aaagagcctcttgttgaagccctgaaggttggagaaattggcaaagaagg
gtaaggggctatatatgaatttactaaccaaccctggaggcctagcctct
ccctgcagcctgtgagaagcaggtcggggcgtgggagtccctgaatggcc
agcaggctcagtgtcagtgctccggatcaccgagggagctgtacacccag
gggccacacagtggctgtttgctttgctggtcttaattattcaacaagca
tcactgtcacagggcaagcagcacagacccctctgagcataaactgttct
tcaacccagtccttactctgaagcctacctcagctcagagccacagatgg
caatgtgtggagctgattaaggtcccctggggatccaccactttaaacac
caggtcagattatttataacgagatggttgatctgggagcacctttccga
atatacaatattgatttgctaagtaaatctcccccttgagaagtacatct
gtactcgagtttatctgatttagaaatttccgatgggaggtatatggagc
ctgaccccgccctcctcccactctggatcgatgccagat
gaattcagacctcaggtagaggtctgataaccttcaggtgaagctgatgt
caggccccagatggccaacaccatggcttccagacaagagggatgagcaa
ggacactgctggaaaatcagccacagagcagggtgaatttcaatggctct
ctccagggtagctactgcttgcactcctggctcttcctacacctctggac
catgatgatgaaggcagtggtgaaaacggagcagacccagaagcagacaa
aagaatcctggcacagctggagagtgggaccaaagccctgcagatgacaa
gcaagggccagcacaagacagcttgcagccagagatggctctgcagcagt
cacagcagcaaccaacagattagccttttactttgggaaaaggagctgct
acagctaactgaaccgcatgcacataaaacttccacaaagtcaggtggac
tgaggagagtttcgtgcctatcctcagtttggtggaaaccactcagccat
atccagtgatctcagacctccatcctttctgtattgcatcatgggaagag
cctgcggctactgctgtatcaggagcaggggacacctctgcaatcagagg
ttcaccttcagtctcgagatggcctagtgatttaccaagtgacacctatg
ttcccaaaagtgcaagtgctttggtacctaatgaaacggcacacttccta
aactgaaatttcaatacaagacaagggttaaacaaagacaacatcacaga
cacagctcattccatgctaaagctgaagatgctgtacttgtagacaatct
ggcagcctctggggatgtgtaacgctacagagctaccctgacccaaagcc
agcatctcccggctgagcatccagactcacagcattttcatgacacaccc
agaggatgggcagaagtgagctgacgagacctgactgatttcgagatggg
acagttttaagcacaagcagggcaaaccccaaatacacacccttcctaac
actggagttttctttctgccctgaacactggttgctgctgactcctcaga
gcttcaagacagagtcttctgtattctcctctatgtccggagcatctcat
gtccacctagctctcacaaaggtttcaatagttaatgaacaagaactttt
agaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106380636_106381795
seq2: B6Ng01-083G05.b_45_1183 (reverse)

seq1  ATCTGGGCATCGAATCCAGAGTGGGGAGTGAGTGCGGGTGTTCAGGCTCC  50
      |||| ||||||| ||||||||| ||||| ||| ||||  | |||||||||
seq2  ATCT-GGCATCG-ATCCAGAGT-GGGAG-GAGGGCGG--GGTCAGGCTCC  44

seq1  ATTAATTACCTCACAATTCTGGAATATTTCTAAATCAGATTAACTCTGAG  100
      ||    |||||| ||  || |||| ||||||||||||||| ||||| |||
seq2  AT---ATACCTCCCA--TC-GGAA-ATTTCTAAATCAGATAAACTC-GAG  86

seq1  TAACAGATGTACTATCTACAAAGAGGAGAATTTACTAAGCAAATCAATAT  150
      | ||||||||||| ||| ||| | |||| ||||||| |||||||||||||
seq2  T-ACAGATGTACT-TCT-CAAGGGGGAG-ATTTACTTAGCAAATCAATAT  132

seq1  TGTATTATTTCGGGAAGGTGCTTCCAGATCAACCATCTCGTTATAAATAA  200
      |||||   ||||| |||||||| |||||||||||||||||||||||||||
seq2  TGTAT--ATTCGGAAAGGTGCTCCCAGATCAACCATCTCGTTATAAATAA  180

seq1  TTCTGACCTGGTGTTTAAAGTGGTGGATCCCCAGGGGACCTTAATCAGCT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TCTGACCTGGTGTTTAAAGTGGTGGATCCCCAGGGGACCTTAATCAGCT  229

seq1  CCACACATTGCCATCTGTGGCTCTGAGCTGAGGTAGGCTTCAGAGTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATTGCCATCTGTGGCTCTGAGCTGAGGTAGGCTTCAGAGTAAGG  279

seq1  ACTGGGTTGAAGAACAGTTTATGCTCAGAGGGGTCTGTGCTGCTTGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTTGAAGAACAGTTTATGCTCAGAGGGGTCTGTGCTGCTTGCCCT  329

seq1  GTGACAGTGATGCTTGTTGAATAATTAAGACCAGCAAAGCAAACAGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGTGATGCTTGTTGAATAATTAAGACCAGCAAAGCAAACAGCCAC  379

seq1  TGTGTGGCCCCTGGGTGTACAGCTCCCTCGGTGATCCGGAGCACTGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCCCCTGGGTGTACAGCTCCCTCGGTGATCCGGAGCACTGACAC  429

seq1  TGAGCCTGCTGGCCATTCAGGGACTCCCACGCCCCGACCTGCTTCTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGCTGGCCATTCAGGGACTCCCACGCCCCGACCTGCTTCTCACA  479

seq1  GGCTGCAGGGAGAGGCTAGGCCTCCAGGGTTGGTTAGTAAATTCATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAGGGAGAGGCTAGGCCTCCAGGGTTGGTTAGTAAATTCATATAT  529

seq1  AGCCCCTTACCCTTCTTTGCCAATTTCTCCAACCTTCAGGGCTTCAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTTACCCTTCTTTGCCAATTTCTCCAACCTTCAGGGCTTCAACAA  579

seq1  GAGGCTCTTTACCTAGTTTGGTCAAGTTCATTTTGGTTTCCAGAGTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCTTTACCTAGTTTGGTCAAGTTCATTTTGGTTTCCAGAGTCATC  629

seq1  AGAAAGGACCCATTGTAAGACATTTCCAAATCGATCCAGAGTCCTAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGACCCATTGTAAGACATTTCCAAATCGATCCAGAGTCCTAGAGA  679

seq1  GACAGTTAACAAACAAACAAAAAAAGGGTTTGTTTTGATTTTCGTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTAACAAACAAACAAAAAAAGGGTTTGTTTTGATTTTCGTTTTTT  729

seq1  CTTTTTGCCTCCCAAGAAATATGAATCTAAATTACAGTATCCAAACGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGCCTCCCAAGAAATATGAATCTAAATTACAGTATCCAAACGGGT  779

seq1  ACTTCCAGGACTAGAAAGATATTTCAGTGGTGAAGAGCACTTGCTACTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGGACTAGAAAGATATTTCAGTGGTGAAGAGCACTTGCTACTCT  829

seq1  GCAGCAGAGTTCAGCTCCCAGCACCCGAATGATGGACTGCAGTCATTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAGTTCAGCTCCCAGCACCCGAATGATGGACTGCAGTCATTATC  879

seq1  TAACTCCAGTTTCAAGGGATCTGACGCCCTCTTTCGACCTCTGAGGACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCAGTTTCAAGGGATCTGACGCCCTCTTTCGACCTCTGAGGACAC  929

seq1  CAGGCATGCATGTGGTGCACACAGGCACACAAAATAAACCCTTCAGCGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATGCATGTGGTGCACACAGGCACACAAAATAAACCCTTCAGCGTC  979

seq1  TTTAAGCTGGCATTAGAGTAAAGCCCACACGTGATTTGTACTAACAATGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCTGGCATTAGAGTAAAGCCCACACGTGATTTGTACTAACAATGG  1029

seq1  AGGCATGGAAAGGGTAAGGCCCTCCGCCCTCAGACCATGAGAGGGACGAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGAAAGGGTAAGGCCCTCCGCCCTCAGACCATGAGAGGGACGAC  1079

seq1  TGGTGGTTTGCATGCAGGGCAGTGGCCACAGTGGCTACTCTGGGGGGTCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTTGCATGCAGGGCAGTGGCCACAGTGGCTACTCTGGGGGGTCA  1129

seq1  CAGTGAATTC  1160
      ||||||||||
seq2  CAGTGAATTC  1139

seq1: chr11_106256839_106258006
seq2: B6Ng01-083G05.g_68_1221

seq1  GAATTCAGACCTCAGGTAGAGGTCTGATAACCTTCAGGTGAAGCTGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCTCAGGTAGAGGTCTGATAACCTTCAGGTGAAGCTGATGT  50

seq1  CAGGCCCCAGATGGCCAACACCATGGCTTCCAGACAAGAGGGATGAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCCAGATGGCCAACACCATGGCTTCCAGACAAGAGGGATGAGCAA  100

seq1  GGACACTGCTGGAAAATCAGCCACAGAGCAGGGTGAATTTCAATGGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTGCTGGAAAATCAGCCACAGAGCAGGGTGAATTTCAATGGCTCT  150

seq1  CTCCAGGGTAGCTACTGCTTGCACTCCTGGCTCTTCCTACACCTCTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGGTAGCTACTGCTTGCACTCCTGGCTCTTCCTACACCTCTGGAC  200

seq1  CATGATGATGAAGGCAGTGGTGAAAACGGAGCAGACCCAGAAGCAGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGATGAAGGCAGTGGTGAAAACGGAGCAGACCCAGAAGCAGACAA  250

seq1  AAGAATCCTGGCACAGCTGGAGAGTGGGACCAAAGCCCTGCAGATGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCTGGCACAGCTGGAGAGTGGGACCAAAGCCCTGCAGATGACAA  300

seq1  GCAAGGGCCAGCACAAGACAGCTTGCAGCCAGAGATGGCTCTGCAGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGCCAGCACAAGACAGCTTGCAGCCAGAGATGGCTCTGCAGCAGT  350

seq1  CACAGCAGCAACCAACAGATTAGCCTTTTACTTTGGGAAAAGGAGCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGCAACCAACAGATTAGCCTTTTACTTTGGGAAAAGGAGCTGCT  400

seq1  ACAGCTAACTGAACCGCATGCACATAAAACTTCCACAAAGTCAGGTGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAACTGAACCGCATGCACATAAAACTTCCACAAAGTCAGGTGGAC  450

seq1  TGAGGAGAGTTTCGTGCCTATCCTCAGTTTGGTGGAAACCACTCAGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAGTTTCGTGCCTATCCTCAGTTTGGTGGAAACCACTCAGCCAT  500

seq1  ATCCAGTGATCTCAGACCTCCATCCTTTCTGTATTGCATCATGGGAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTGATCTCAGACCTCCATCCTTTCTGTATTGCATCATGGGAAGAG  550

seq1  CCTGCGGCTACTGCTGTATCAGGAGCAGGGGACACCTCTGCAATCAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGGCTACTGCTGTATCAGGAGCAGGGGACACCTCTGCAATCAGAGG  600

seq1  TTCACCTTCAGTCTCGAGATGGCCTAGTGATTTACCAAGTGACACCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTTCAGTCTCGAGATGGCCTAGTGATTTACCAAGTGACACCTATG  650

seq1  TTCCCAAAAGTGCAAGTGCTTTGGTACCTAATGAAACGGCACACTTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAAAGTGCAAGTGCTTTGGTACCTAATGAAACGGCACACTTCCTA  700

seq1  AACTGAAATTTCAATACAAGACAAGGGTTAAACAAAGACAACATCACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAATTTCAATACAAGACAAGGGTTAAACAAAGACAACATCACAGA  750

seq1  CACAGCTCAATTCCATGCTAAAGCTGAAGATGCTGTACTTGTAGACAATC  800
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTC-ATTCCATGCTAAAGCTGAAGATGCTGTACTTGTAGACAATC  799

seq1  TGGCAGCCTCTGGGGATGTGTAACGCTACAGAGCTACCCTGACCCAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCCTCTGGGGATGTGTAACGCTACAGAGCTACCCTGACCCAAAGC  849

seq1  CAGCATCT-CCGGCTGAGCATCCAGACTCACAGCATTTTCATGACACACC  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTCCCGGCTGAGCATCCAGACTCACAGCATTTTCATGACACACC  899

seq1  CAGAGGATGGGCAGAAGGTGAGCTGACGAGACCTGACTGATTTCGAGATG  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAGAGGATGGGCAGAA-GTGAGCTGACGAGACCTGACTGATTTCGAGATG  948

seq1  GGACAGTTTTAAGGCACAAGCAGGGCAAACCCCAAATACACACCCTTCCT  999
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGACAGTTTTAA-GCACAAGCAGGGCAAACCCCAAATACACACCCTTCCT  997

seq1  AACCACTGGAGTTTTCTTTCTGCCCTG-ACACTGTGTGCTGCTGACT-CT  1047
      || |||||||||||||||||||||||| ||||||  ||||||||||| ||
seq2  AA-CACTGGAGTTTTCTTTCTGCCCTGAACACTGGTTGCTGCTGACTCCT  1046

seq1  CAGGAGGCTTCAAAGACAGAAGTCTTTCCTGTATTCTTCCTCTATGTCCC  1097
      |||   ||||| ||||||| ||||||  |||||||| |||||||||||| 
seq2  CAG--AGCTTC-AAGACAG-AGTCTT--CTGTATTC-TCCTCTATGTCCG  1089

seq1  GAGCATCTCATGTCCCACCTAGCTCTACACAAAGTTTTCAAATAAGTATA  1147
      ||||||||||||| |||||||||||| ||||||| ||||||   ||| ||
seq2  GAGCATCTCATGT-CCACCTAGCTCT-CACAAAGGTTTCAA--TAGT-TA  1134

seq1  ATGAACAGAGGACTTTTAGAA  1168
      ||||||| || ||||||||||
seq2  ATGAACA-AGAACTTTTAGAA  1154