BAC Information

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BAC

Clone NameB6Ng01-085C11
Chromosome11 (Build37)
Map Location 34,703,924 - 34,877,305
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnip1, Kcnmb1, Lcp2, Foxi1, Dock2, EG574403, Dock2, Ccdc99, LOC100038976
Downstream geneSlit3, LOC100039006, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532, Odz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085C11.bB6Ng01-085C11.g
ACCDH898902DH898903
length1,1531,148
definitionDH898902|Mus musculus domesticus DNA, BAC clone: B6Ng01-085C11, 5' end.DH898903|Mus musculus domesticus DNA, BAC clone: B6Ng01-085C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,703,924 - 34,705,093)(34,876,152 - 34,877,305)
sequence
gaattcatggctctcaatgtcccttttgtcaaacaatgaccccatgagta
ggttttatgcgggttgggggaaaatggaatagacaatctcagcacagact
acctcagctgtgtgccttgagatgctgcctggccagcgcagcccactagg
gaagttcctatccagcagggcaggtagaaggccaagcactaggccctagc
acccaggggaattcagtgatggaagacatagacctttaggctgtgactcc
cagccatgcaccacccctcttaacttccatttattggatctttcccacat
tttcacagctgctaaatatatctcctgaattaacatatcttaatttaata
attgttgtatccatgagaaagggagcctcatagtgaggaaacccaagcag
actcaatcattagagccattacagtcatgcagttagtgagcaacagagcc
acattttccctgaggaatctgacactgacgcccatcaaccctgcccattg
gcctgttaccgcaacttcacattcacccattgaatttactattctaggtt
catgtctggctgggtaagatagcatactgcctggattttaataagcactg
cccaagtgggtccatagcttccatctctgaagtaggctgtgttgtcgttg
ttgttattgctgttgctgttgttgcactacactcttctcactcttctcta
gacagtcttaatttgctaaggttatcaaagcattagcagatgggatggct
ttaacaacaacacatatctttttttttaacacccacaaaggctggaaggc
cacgatcaaagtttggtttctttagatgcctttctccgtgccttgcagac
tgtcatgttccccactgggcccacatatggtttctttagatgcacacata
cctcacatacctggcatctccccagacaccctaatctccttttcttataa
taaccatccgtaggggatttcactcatgatagtgtacttgtgtagcaatt
gcaatgccctggttcagtcatcatgtctgggttggtgggaggccacccag
tcaaatggaatagatagaccccatgggctccttttcccccgttgctcctt
tgtagttccttattccaaccaattccttgtgctactgtcgaacggggttc
aac
gaattccatgtgcttgttaaaataaccacagaggaaagagaagaagacag
accaagagataagagtgaattctaaacctaatatgggactgggaggaagc
aaaggacagcagtaaggggtggtgaagatcagaattagtatgacaaagtc
aagtcagccgtaaagtcaccaaatgtgagactgatggtgaacaggggaaa
agagaaagtgagatgaggagtggggagggagacagctgctgcctttgtga
gaaccttcgaattgacagagagctgtgtgtcatgactgtggtgaatacac
caaccaatggaattacccacaattcagcacacacccacattgaatggcac
agatatacaaggggtaaaactgggaagtcgaagtcagtattggtgggtta
tataaagtttagaattcttcttgtgaagctctgaccctcccccacccact
ttttttccttacaagttattaccacagaagaaaactgagtggaatccaca
caggctctctctactgtgtcctacagctgtgtgtgcaaccacagctactg
caaccaaaatgttttagttaagataaaaagaacaaagccatggggacaca
aagcaagtgtaagcgacaggagaataggggctcaaaacagagacagagat
ggcgttattaaattgactagatgcgaggatcaaaggcaaaaaccgattct
aatgtttctggggtggggagaatgccaatattcatggattgaaaagagtt
gctaaagtttaggcagaatgaaggaaattgattttaaacacatgtgtcaa
ggctttctctataaaggatttgctattagtaaatgatagccctgtaaagg
ctgccaagaaaactcaagagcttttaagcagccgtgggaaataaaaggtg
gcaactcactggctagcgtgtgaagaaacacttgttttggggaatccata
ttggaatcatgggctggtgacatcctaaaggtaatgtggaatcaaagaga
agggcaggagagtaaactggtaaagggagactgcctagtagctggctatt
ctgaatgaatcctggccggttataatgatccccaagaaatacaaagtgag
ccctcatcgcgttcttttagattgaatgtaggcacaagcaaaccccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_34703924_34705093
seq2: B6Ng01-085C11.b_43_1195

seq1  GAATTCATGGCTCTCAATGTCCCTTTCTGTCCAACAATGACCCCATGAGT  50
      |||||||||||||||||||||||||| |||| ||||||||||||||||||
seq2  GAATTCATGGCTCTCAATGTCCCTTT-TGTCAAACAATGACCCCATGAGT  49

seq1  AGGTTTTATGCGGGTTGGGGGAAAATGGAATAGACAATCTCAGCACAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTATGCGGGTTGGGGGAAAATGGAATAGACAATCTCAGCACAGAC  99

seq1  TACCTCAGCTGTGTGCCTTGAGATGCTGCCTGGCCAGCGCAGCCCACTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAGCTGTGTGCCTTGAGATGCTGCCTGGCCAGCGCAGCCCACTAG  149

seq1  GGAAGTTCCTATCCAGCAGGGCAGGTAGAAGGCCAAGCACTAGGCCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTCCTATCCAGCAGGGCAGGTAGAAGGCCAAGCACTAGGCCCTAG  199

seq1  CACCCAGGGGAATTCAGTGATGGAAGACATAGACCTTTAGGCTGTGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGGGGAATTCAGTGATGGAAGACATAGACCTTTAGGCTGTGACTC  249

seq1  CCAGCCATGCACCACCCCTCTTAACTTCCATTTATTGGATCTTTCCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCATGCACCACCCCTCTTAACTTCCATTTATTGGATCTTTCCCACA  299

seq1  TTTTCACAGCTGCTAAATATATCTCCTGAATTAACATATCTTAATTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAGCTGCTAAATATATCTCCTGAATTAACATATCTTAATTTAAT  349

seq1  AATTGTTGTATCCATGAGAAAGGGAGCCTCATAGTGAGGAAACCCAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTGTATCCATGAGAAAGGGAGCCTCATAGTGAGGAAACCCAAGCA  399

seq1  GACTCAATCATTAGAGCCATTACAGTCATGCAGTTAGTGAGCAACAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAATCATTAGAGCCATTACAGTCATGCAGTTAGTGAGCAACAGAGC  449

seq1  CACATTTTCCCTGAGGAATCTGACACTGACGCCCATCAACCCTGCCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTCCCTGAGGAATCTGACACTGACGCCCATCAACCCTGCCCATT  499

seq1  GGCCTGTTACCGCAACTTCACATTCACCCATTGAATTTACTATTCTAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTTACCGCAACTTCACATTCACCCATTGAATTTACTATTCTAGGT  549

seq1  TCATGTCTGGCTGGGTAAGATAGCATACTGCCTGGATTTTAATAAGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTGGCTGGGTAAGATAGCATACTGCCTGGATTTTAATAAGCACT  599

seq1  GCCCAAGTGGGTCCATAGCTTCCATCTCTGAAGTAGGCTGTGTTGTCGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGTGGGTCCATAGCTTCCATCTCTGAAGTAGGCTGTGTTGTCGTT  649

seq1  GTTGTTATTGCTGTTGCTGTTGTTGCACTACACTCTTCTCACTCTTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTATTGCTGTTGCTGTTGTTGCACTACACTCTTCTCACTCTTCTCT  699

seq1  AGACAGTCTTAATTTGCTAAGGTTATCAAAGCATTAGCAGATGGGATGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTCTTAATTTGCTAAGGTTATCAAAGCATTAGCAGATGGGATGGC  749

seq1  TTTAACAACAACACATATCTTTTTTTTTAACACCCACAAAGGCTGGAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAACAACACATATCTTTTTTTTTAACACCCACAAAGGCTGGAAGG  799

seq1  CCACGATCAAGGTTTGGTTTCTTTAGATGCCTTTCTCCGTGCCTTGCAGA  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCACGATCAAAGTTTGGTTTCTTTAGATGCCTTTCTCCGTGCCTTGCAGA  849

seq1  CTGTCATGTTCCCCACTGGGCCCACATATGGTTTCTTTAGATGCACACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATGTTCCCCACTGGGCCCACATATGGTTTCTTTAGATGCACACAT  899

seq1  ACCTCACATACCTGGCATCTCCCCAGACACCCTAATCTCCTTTTCTTATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACATACCTGGCATCTCCCCAGACACCCTAATCTCCTTTTCTTATA  949

seq1  AATAAACCATCCGTAGGGGATTTCACTCAATGATAGTGTACTTGTGTAGC  1000
      |   |||||||||||||||||||||||| |||||||||||||||||||||
seq2  A--TAACCATCCGTAGGGGATTTCACTC-ATGATAGTGTACTTGTGTAGC  996

seq1  AAGTGCAAGGCCCTGGGTTCAGTCATCAGTGTCGGGGTGGGTGGGAGGCC  1050
      || ||||| ||||| ||||||||||||| |||| |||| |||||||||||
seq2  AATTGCAATGCCCT-GGTTCAGTCATCA-TGTCTGGGTTGGTGGGAGGCC  1044

seq1  ACACCAGTCAAATTGGATTAGGATAGACCCCAATGGCTTCATTTTCACCC  1100
      || ||||||||| |||| || |||||||||| ||||  || ||||| |||
seq2  AC-CCAGTCAAA-TGGAATA-GATAGACCCC-ATGGGCTCCTTTTCCCCC  1090

seq1  AGTTTGCCTCTTTGAAGTCTCTATATCCAAGCAGATTCCTATGTTGCTAT  1150
         ||||  ||||| |||  ||   ||||| || |||||| || |||  |
seq2  --GTTGCTCCTTTGTAGTTCCTTATTCCAACCA-ATTCCT-TG-TGC--T  1133

seq1  ACTG-CGAACGGGGTTTCAAC  1170
      |||| ||||||||| ||||||
seq2  ACTGTCGAACGGGG-TTCAAC  1153

seq1: chr11_34876152_34877305
seq2: B6Ng01-085C11.g_71_1218 (reverse)

seq1  ATTGGGTTTGCTTTGTGCCTACATTCACATCTAAATAGAAACCGAT-AGA  49
      || |||||||| ||||||||||||||| ||||||| ||||  |||| || 
seq2  ATGGGGTTTGC-TTGTGCCTACATTCA-ATCTAAA-AGAACGCGATGAGG  47

seq1  GGTCACTTTTGTGTCTCTTAGGAGATCACTTATATACAGCCAGGACTCAT  99
      | |||| ||||| | |||| || ||||| |||||  | ||||||| ||||
seq2  GCTCAC-TTTGTATTTCTT-GGGGATCA-TTATAACCGGCCAGGATTCAT  94

seq1  TCAGAAATGACAGGCTAACTAACGCAGTCTCC--TTTCCAGTCTACTCTG  147
      ||||||  | || ||| ||| | |||||||||  || ||||| |||||| 
seq2  TCAGAATAGCCA-GCT-ACT-AGGCAGTCTCCCTTTACCAGTTTACTCT-  140

seq1  CCTGCACTATCTCTTTGATTCCACATTACCTTATGGATGTCACCAGCCCA  197
      ||||| || |||||||||||||||||||||||  ||||||||||||||||
seq2  CCTGCCCT-TCTCTTTGATTCCACATTACCTTTAGGATGTCACCAGCCCA  189

seq1  TGATTCCAATATGGAATCCCCAAAACAAGTGTTTTCTTCAACACCGCTAG  247
      ||||||||||||||| ||||||||||||||| ||||||| ||| ||||||
seq2  TGATTCCAATATGGATTCCCCAAAACAAGTG-TTTCTTC-ACA-CGCTAG  236

seq1  CCAGTGAGTTGCCA-CTTTTATTTCCCACGGCTGCTTAAAAGCTCTTG-G  295
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  CCAGTGAGTTGCCACCTTTTATTTCCCACGGCTGCTTAAAAGCTCTTGAG  286

seq1  TTTTCTTGGCAGCC-TTACAGGGCTATCATTTACT-ATAGC-AATCC-TT  341
      |||||||||||||| |||||||||||||||||||| ||||| ||||| ||
seq2  TTTTCTTGGCAGCCTTTACAGGGCTATCATTTACTAATAGCAAATCCTTT  336

seq1  ATAGAGAAAGCCTTGACACATGTGTTTAAAAATCAATTTCCTTCATTCTG  391
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATAGAGAAAGCCTTGACACATGTGTTT-AAAATCAATTTCCTTCATTCTG  385

seq1  CCTAAACTTTAGCAACTCTTTTCAATCCATGAATATTGGCATTTCTCCCC  441
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTAAACTTTAGCAACTCTTTTCAATCCATGAATATTGGCA-TTCTCCCC  434

seq1  ACCCCAGAAACATTAGAATCGGTTTTTGCCTTTGATCCTCGCATCTAGTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGAAACATTAGAATCGGTTTTTGCCTTTGATCCTCGCATCTAGTC  484

seq1  AATTTAATAACGCCATCTCTGTCTCTGTTTTGAGCCCCTATTCTCCTGTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATAACGCCATCTCTGTCTCTGTTTTGAGCCCCTATTCTCCTGTC  534

seq1  GCTTACACTTGCTTTGTGTCCCCATGGCTTTGTTCTTTTTATCTTAACT-  590
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCTTACACTTGCTTTGTGTCCCCATGGCTTTGTTCTTTTTATCTTAACTA  584

seq1  AAACATTTTGGTTGCAGTAGCTGTGGTTGCACACACAGCTGTAGGACACA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTGGTTGCAGTAGCTGTGGTTGCACACACAGCTGTAGGACACA  634

seq1  GTAGAGAGAGCCTGTGTGGATTCCACTCAGTTTTCTTCTGTGGTAATAAC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAGAGCCTGTGTGGATTCCACTCAGTTTTCTTCTGTGGTAATAAC  684

seq1  TTGTAAGGAAAAAAAGTGGGTGGGGGAGGGTCAGAGCTTCACAAGAAGAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGGAAAAAAAGTGGGTGGGGGAGGGTCAGAGCTTCACAAGAAGAA  734

seq1  TTCTAAACTTTATATAACCCACCAATACTGACTTCGACTTCCCAGTTTTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAACTTTATATAACCCACCAATACTGACTTCGACTTCCCAGTTTTA  784

seq1  CCCCTTGTATATCTGTGCCATTCAATGTGGGTGTGTGCTGAATTGTGGGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGTATATCTGTGCCATTCAATGTGGGTGTGTGCTGAATTGTGGGT  834

seq1  AATTCCATTGGTTGGTGTATTCACCACAGTCATGACACACAGCTCTCTGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATTGGTTGGTGTATTCACCACAGTCATGACACACAGCTCTCTGT  884

seq1  CAATTCGAAGGTTCTCACAAAGGCAGCAGCTGTCTCCCTCCCCACTCCTC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCGAAGGTTCTCACAAAGGCAGCAGCTGTCTCCCTCCCCACTCCTC  934

seq1  ATCTCACTTTCTCTTTTCCCCTGTTCACCATCAGTCTCACATTTGGTGAC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTTTCTCTTTTCCCCTGTTCACCATCAGTCTCACATTTGGTGAC  984

seq1  TTTACGGCTGACTTGACTTTGTCATACTAATTCTGATCTTCACCACCCCT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGGCTGACTTGACTTTGTCATACTAATTCTGATCTTCACCACCCCT  1034

seq1  TACTGCTGTCCTTTGCTTCCTCCCAGTCCCATATTAGGTTTAGAATTCAC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGTCCTTTGCTTCCTCCCAGTCCCATATTAGGTTTAGAATTCAC  1084

seq1  TCTTATCTCTTGGTCTGTCTTCTTCTCTTTCCTCTGTGGTTATTTTAACA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTCTTGGTCTGTCTTCTTCTCTTTCCTCTGTGGTTATTTTAACA  1134

seq1  AGCACATGGAATTC  1154
      ||||||||||||||
seq2  AGCACATGGAATTC  1148