BAC Information

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BAC

Clone NameB6Ng01-085G03
Chromosome11 (Build37)
Map Location 98,075,556 - 98,223,300
singlet/doubletdoublet
Overlap geneCrkrs, Neurod2, Ppp1r1b, Stard3
Upstream geneNpepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982
Downstream geneTcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085G03.bB6Ng01-085G03.g
ACCDH899070DH899071
length1,1931,012
definitionDH899070|Mus musculus domesticus DNA, BAC clone: B6Ng01-085G03, 5' end.DH899071|Mus musculus domesticus DNA, BAC clone: B6Ng01-085G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,222,102 - 98,223,300)(98,075,556 - 98,076,587)
sequence
gaattctgcccggaactggagagagggaacaggtctggggtcagcattag
acctgaaatcaaaagcccaggggcactctttgttgggctgtatccttgcc
aagtcactgagcctcatacacagtgtcatctgtaaagtggagagcagagg
gtacctacctaagggagcttgaagggatgagaaattccacctgtgcttac
ttaatgactgctccccctactactccctgccacacaatgcaggccagggc
caggcagatgtagcagggcactgtgcccgaaccagaggtccgtctggcct
gcgggttaggaggaccctgcctcaggaaacctatcagggatagctctcct
gtttggtgactcctgccctcagccgaggaacaactggcttcaggctccct
ggccacatacatacccacagagggcttgtgaaggtccccggccctgggga
agtagaagtttgaagagagacagggcacatggcagcagtgagaaacatga
gtgcaaacacaaagtggtttccatttcccctttccttagggctaagtagg
aagaggagagtcaggctagcacaggaactggccactccttcctagactcg
gttctgaccacacagtaactggagagcccaccacatgtgccaggcttgct
cagcccctgcccccaccctgcccttctaggatgccctgagctcagtgact
ccgtgacctctggcccactcaggggctgtgaatcagactctactccattc
tttagtgatcctgggtcaaaactgaggctgaggaagtcaagtccccagag
tcactctggaaagggccggcccctctgagagctgtgagctctctcatgaa
aaggcctgggcgcacaggctcctcccgggcccagctctggccagacaaaa
gcctacatttgccgcactccagccagaaaacattcagaggagcacacagc
taacaaaatggcatgctattcattgttctgtccgctgatgtgccagctgc
tcccttggatgctggaacaaagcagtgcctgggaaatggctatgcatctt
gaaatagctaccgcttttaatctctacggagtgacttgaacaacctctcc
ccaaggctcagtttccccacttgcaagaaggaggcaaggaccgccattca
acaggtaggaatggaagccgccagccacgggatttctggtctt
gaattctaggattaaaagtggggctactatgcccaactcaatgtcattat
tgtaagtatttggtaactggtttttgtgggttttttttgttttttttttt
tcctgagtaatttttttttattcataaattattaaaggtaagaaatggaa
gtgaagattttgtatttttcttgagactgagggaagaaagagatcagtct
ctgtagcttattggccagctagactggagaatttgaggagattcaattca
gtgagaaatattgtctcaaaaaataaaatttgatagcaccagtgaaagac
ctttgagtgcctctggcttctacacttgtacatacaaacaacttatacac
atgtgtagaggcctacactagcaattacaacacacataacaatataagag
aggatagagacagagaagcacatacacactctgactgagactttaaacta
ggctttgtggccacttgccatgctagccctcaggatgctgatatagagga
atagattagggttggagggctggcattgactcccaaatgctgggattata
tgccctttcaatataggttattagactaaatgaataattaaaattgcata
aggcattagggtcaggatagttgagaggctggaacaatgccttaatggta
aagagcactggctgctctttccgaggaccagtgttcaatccccagtactc
atatcgtggtttgcaactatctgtctctccagtgccagtgtatttgccct
ctgcagtcacttcatgcatgtggtatacagacaaaataataaaataatcg
agataatgagaagaaaaataaacacattctgataacataaagcttatact
ggtgacagaacaagtgaatgaattggttatgataattcaaaagctttttt
gtctgttcatttttgtttttgagacagtgtgttttgtgtagacttggctg
tctgtacttgtcgagacagatagtctggaactagcaagaatctgctgtct
tcctctgtgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_98222102_98223300
seq2: B6Ng01-085G03.b_49_1241 (reverse)

seq1  AAGACCAGAAATCCCGTGGCTGGCTGGCTCCTCTCAT-CCTGTTGAATGC  49
      |||||||||||||||||||||||| |  |||  || | ||||||||||| 
seq2  AAGACCAGAAATCCCGTGGCTGGCGGCTTCCATTCCTACCTGTTGAATGG  50

seq1  TGGTGCCTTTTGCCTCCTCTCTGCAGATGAGGAAGCTGAGCCTTGGGG-G  98
       ||| |   |||||||||   ||||  || |||| ||||||||||||| |
seq2  CGGTCC---TTGCCTCCTTCTTGCAAGTGGGGAAACTGAGCCTTGGGGAG  97

seq1  AGGTTGGTTCAAGTCACTCAGTAGAGATTTAAAGACGGGTAGCTTAATTT  148
      ||||| ||||||||||||| ||||||||| ||||   |||||||  ||||
seq2  AGGTT-GTTCAAGTCACTCCGTAGAGATTAAAAG--CGGTAGCT--ATTT  142

seq1  C-AGATGCATAGCCATGTCCCAGGCACTGCCTCTGTTCCAGCATCCAAGC  197
      | |||||||||||||| |||||||||||| || |||||||||||||||| 
seq2  CAAGATGCATAGCCATTTCCCAGGCACTG-CTTTGTTCCAGCATCCAAGG  191

seq1  GAGCAGCTGGCACATCAGCGGACAGGACAATGAATAGCATGCCATTTTGT  247
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGCAGCTGGCACATCAGCGGACAGAACAATGAATAGCATGCCATTTTGT  241

seq1  TAGCTGTGTGCTCCTCTGAATGTTTTCTGGCTGGAGTGCGGCAAATGTAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGTGCTCCTCTGAATGTTTTCTGGCTGGAGTGCGGCAAATGTAG  291

seq1  GCTTTTGTCTGGCCAGAGCTGGGCCCGGGAGGAGCCTGTGCGCCCAGGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTCTGGCCAGAGCTGGGCCCGGGAGGAGCCTGTGCGCCCAGGCC  341

seq1  TTTTCATGAGAGAGCTCACAGCTCTCAGAGGGGCCGGCCCTTTCCAGAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGAGAGAGCTCACAGCTCTCAGAGGGGCCGGCCCTTTCCAGAGT  391

seq1  GACTCTGGGGACTTGACTTCCTCAGCCTCAGTTTTGACCCAGGATCACTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGGGGACTTGACTTCCTCAGCCTCAGTTTTGACCCAGGATCACTA  441

seq1  AAGAATGGAGTAGAGTCTGATTCACAGCCCCTGAGTGGGCCAGAGGTCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGGAGTAGAGTCTGATTCACAGCCCCTGAGTGGGCCAGAGGTCAC  491

seq1  GGAGTCACTGAGCTCAGGGCATCCTAGAAGGGCAGGGTGGGGGCAGGGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCACTGAGCTCAGGGCATCCTAGAAGGGCAGGGTGGGGGCAGGGGC  541

seq1  TGAGCAAGCCTGGCACATGTGGTGGGCTCTCCAGTTACTGTGTGGTCAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAGCCTGGCACATGTGGTGGGCTCTCCAGTTACTGTGTGGTCAGA  591

seq1  ACCGAGTCTAGGAAGGAGTGGCCAGTTCCTGTGCTAGCCTGACTCTCCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGTCTAGGAAGGAGTGGCCAGTTCCTGTGCTAGCCTGACTCTCCTC  641

seq1  TTCCTACTTAGCCCTAAGGAAAGGGGAAATGGAAACCACTTTGTGTTTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACTTAGCCCTAAGGAAAGGGGAAATGGAAACCACTTTGTGTTTGC  691

seq1  ACTCATGTTTCTCACTGCTGCCATGTGCCCTGTCTCTCTTCAAACTTCTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGTTTCTCACTGCTGCCATGTGCCCTGTCTCTCTTCAAACTTCTA  741

seq1  CTTCCCCAGGGCCGGGGACCTTCACAAGCCCTCTGTGGGTATGTATGTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCAGGGCCGGGGACCTTCACAAGCCCTCTGTGGGTATGTATGTGG  791

seq1  CCAGGGAGCCTGAAGCCAGTTGTTCCTCGGCTGAGGGCAGGAGTCACCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGCCTGAAGCCAGTTGTTCCTCGGCTGAGGGCAGGAGTCACCAA  841

seq1  ACAGGAGAGCTATCCCTGATAGGTTTCCTGAGGCAGGGTCCTCCTAACCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGAGCTATCCCTGATAGGTTTCCTGAGGCAGGGTCCTCCTAACCC  891

seq1  GCAGGCCAGACGGACCTCTGGTTCGGGCACAGTGCCCTGCTACATCTGCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCAGACGGACCTCTGGTTCGGGCACAGTGCCCTGCTACATCTGCC  941

seq1  TGGCCCTGGCCTGCATTGTGTGGCAGGGAGTAGTAGGGGGAGCAGTCATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGGCCTGCATTGTGTGGCAGGGAGTAGTAGGGGGAGCAGTCATT  991

seq1  AAGTAAGCACAGGTGGAATTTCTCATCCCTTCAAGCTCCCTTAGGTAGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGCACAGGTGGAATTTCTCATCCCTTCAAGCTCCCTTAGGTAGGT  1041

seq1  ACCCTCTGCTCTCCACTTTACAGATGACACTGTGTATGAGGCTCAGTGAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTGCTCTCCACTTTACAGATGACACTGTGTATGAGGCTCAGTGAC  1091

seq1  TTGGCAAGGATACAGCCCAACAAAGAGTGCCCCTGGGCTTTTGATTTCAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAGGATACAGCCCAACAAAGAGTGCCCCTGGGCTTTTGATTTCAG  1141

seq1  GTCTAATGCTGACCCCAGACCTGTTCCCTCTCTCCAGTTCCGGGCAGAAT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATGCTGACCCCAGACCTGTTCCCTCTCTCCAGTTCCGGGCAGAAT  1191

seq1  TC  1199
      ||
seq2  TC  1193

seq1: chr11_98075556_98076587
seq2: B6Ng01-085G03.g_70_1081

seq1  GAATTCTAGGATTAAAAGTGGGGCTACTATGCCCAACTCAATGTCATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGATTAAAAGTGGGGCTACTATGCCCAACTCAATGTCATTAT  50

seq1  TGTAAGTATTTGGTAACTGGTTTTTGTGGGTTTTTTTTGTTTTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTATTTGGTAACTGGTTTTTGTGGGTTTTTTTTGTTTTTTTTTTT  100

seq1  TCCTGAGTAATTTTTTTTTATTCATAAATTATTAAAGGTAAGAAATGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTAATTTTTTTTTATTCATAAATTATTAAAGGTAAGAAATGGAA  150

seq1  GTGAAGATTTTGTATTTTTCTTGAGACTGAGGGAAGAAAGAGATCAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGATTTTGTATTTTTCTTGAGACTGAGGGAAGAAAGAGATCAGTCT  200

seq1  CTGTAGCTTATTGGCCAGCTAGACTGGAGAATTTGAGGAGATTCAATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTTATTGGCCAGCTAGACTGGAGAATTTGAGGAGATTCAATTCA  250

seq1  GTGAGAAATATTGTCTCAAAAAATAAAATTTGATAGCACCAGTGAAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAATATTGTCTCAAAAAATAAAATTTGATAGCACCAGTGAAAGAC  300

seq1  CTTTGAGTGCCTCTGGCTTCTACACTTGTACATACAAACAACTTATACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGTGCCTCTGGCTTCTACACTTGTACATACAAACAACTTATACAC  350

seq1  ATGTGTAGAGGCCTACACTAGCAATTACAACACACATAACAATATAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAGAGGCCTACACTAGCAATTACAACACACATAACAATATAAGAG  400

seq1  AGGATAGAGACAGAGAAGCACATACACACTCTGACTGAGACTTTAAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGAGACAGAGAAGCACATACACACTCTGACTGAGACTTTAAACTA  450

seq1  GGCTTTGTGGCCACTTGCCATGCTAGCCCTCAGGATGCTGATATAGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGTGGCCACTTGCCATGCTAGCCCTCAGGATGCTGATATAGAGGA  500

seq1  ATAGATTAGGGTTGGAGGGCTGGCATTGACTCCCAAATGCTGGGATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTAGGGTTGGAGGGCTGGCATTGACTCCCAAATGCTGGGATTATA  550

seq1  TGCCCTTTCAATATAGGTTATTAGACTAAATGAATAATTAAAATTGCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTTCAATATAGGTTATTAGACTAAATGAATAATTAAAATTGCATA  600

seq1  AGGCATTAGGGTCAGGATAGTTGAGAGGCTGGAACAATGCCTTAATGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTAGGGTCAGGATAGTTGAGAGGCTGGAACAATGCCTTAATGGTA  650

seq1  AAGAGCACTGGCTGCTCTTTCCGAGGACCAGTGTTCAATCCCCAGTACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACTGGCTGCTCTTTCCGAGGACCAGTGTTCAATCCCCAGTACTC  700

seq1  ATATCGTGGTTTGCAACTATCTGTCTCTCCAGTGCCAGTGTATTTGCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGTGGTTTGCAACTATCTGTCTCTCCAGTGCCAGTGTATTTGCCCT  750

seq1  CTGCAGTCACTTCATGCATGTGGTATACAGACAAAATAATAAAATAATCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTCACTTCATGCATGTGGTATACAGACAAAATAATAAAATAATCG  800

seq1  AGATAATGAGAAGAAAAATAAAACAACATTCTGATAACATAAAGCTTATA  850
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  AGATAATGAGAAGAAAAATAAA--CACATTCTGATAACATAAAGCTTATA  848

seq1  CTGGTGACAGAACAAGTGAATGAATTTGGTTAATGATAATTCAAAAAGCT  900
      |||||||||||||||||||||||| |||||| |||||||||| |||||| 
seq2  CTGGTGACAGAACAAGTGAATGAA-TTGGTT-ATGATAATTC-AAAAGC-  894

seq1  TTTTTTGTCTTGTTCATTTTTGTTTTTTGAGACAGTGTGTTTTTGTGTAG  950
      ||||||||| |||||||||||| |||||||||||||||| ||||||||||
seq2  TTTTTTGTC-TGTTCATTTTTG-TTTTTGAGACAGTGTG-TTTTGTGTAG  941

seq1  ACTTGGCTGTCCTGTAGCTTGTTCTGTAGACCAGGATAGTCTGGAACTAG  1000
      |||||||||| ||||| ||||   |  ||||   ||||||||||||||||
seq2  ACTTGGCTGT-CTGTA-CTTG---TCGAGAC--AGATAGTCTGGAACTAG  984

seq1  CAGAGATCTGCCTGTCTTTGCTTCCTGTGTAC  1032
      ||   ||||| |||||||  | | ||||||||
seq2  CAAGAATCTG-CTGTCTT--CCT-CTGTGTAC  1012