BAC Information

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BAC

Clone NameB6Ng01-085G14
Chromosome11 (Build37)
Map Location 104,115,312 - 104,225,174
singlet/doubletdoublet
Overlap geneMapt, 1700081L11Rik
Upstream geneMap3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik
Downstream geneCdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085G14.bB6Ng01-085G14.g
ACCDH899090DH899091
length522972
definitionDH899090|Mus musculus domesticus DNA, BAC clone: B6Ng01-085G14, 5' end.DH899091|Mus musculus domesticus DNA, BAC clone: B6Ng01-085G14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,224,646 - 104,225,174)(104,115,312 - 104,116,292)
sequence
caagcaatcctcccccccttaataaccagatgctaagattctaaacatac
ttctcaggacactggttcttagatccttccttgtccctgccccccatata
ccctataaaacttatacttaataggatttttcttcaagaccttttgtcac
atttctttggattagctaagagggcaaattattaattccagtgcctgcct
tttctatcactatgttaaatattttgtgccttatactggattctttcaat
aaaagaaaatagccaggtggtgctggcatatgccttgaatcccagcactc
gggaggcagaggcaggccagtttctgagttcaaggccagccagggctata
cagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaacctaa
ttctcacaaggccatcctttatggccctgcttagacagatgaggattatg
agtgcatttttgtctgccaccttaactttcctatgcttttctctgtgagc
tataaatcctgaactttggagg
gaattccaagacagctagggctaccaagtagagagagtctgtctcaaaac
aacaacaaaatagcttagaagcatggcatacatgggtatgtacatgtgtc
tgtgtaaaacatgtttataacataagacatagttgaacccgggaaccaaa
tgttcttgtagacccacagatggacgggataggtgagcaaggagaaatgg
gttagtgtgtttaagtccctaccttaacatagatgggaacgaacgatcta
cactgcccagtggggaactgcatgtcatgtgacaacatagatggaactat
ctgatttataatcccaaatcctttttatgtcaaaaatagccccactgcta
ttttttcctcttggtgctttcacatagatgacttcattgcgtgcccctcc
aggccgttccagagccagtggcacttcctgtttggaaggggaggaaatgg
gtgctgcctgtctccatctccctaccttcctgggtgcagatgccacaccc
tgcccctgcacagtcctcccccaggcagctcatcatggtgagcgggactc
cttcagaatccctgcctgctcacatcacccctgcttcctctgaaggactc
agagaacatactggagaccctgcggagttaaaggagccgaggcgatgtgg
tacctcagtgttttccaagtctttagcaagtacacgcggttaccagcctt
ggcaggctagctgagcacctggcagcctcagccgggagaaccttccagat
gggctgtaggcttccagcacagtgccgagaatgatgctcttcccaggctc
agacccttgggctggtcacccatgtggtccagtcccaggtcttgggccca
tttttggaatttctatttggagatgtgggggtggcactgacatgggacag
atggtgcttcctgtttcagctcattgcctcagcaaatgagatcttgcagc
tttttgcagatgcttctggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104224646_104225174
seq2: B6Ng01-085G14.b_47_574 (reverse)

seq1  CCTCCAAAGTTCAGGATTTATAGCTCACAGAGAAAAGCATAGGAAAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAAGTTCAGGATTTATAGCTCACAGAGAAAAGCATAGGAAAGTTA  50

seq1  AGGTGGCAGACAAAAATGCACTCATAATCCTCATCTGTCTAAGCAGGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCAGACAAAAATGCACTCATAATCCTCATCTGTCTAAGCAGGGCC  100

seq1  ATAAAGGATGGCCTTGTGAGAATTAGGTTTTTTTTTTTTTTTTTTTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGATGGCCTTGTGAGAATTAGGTTTTTTTTTTTTTTTTTTTTGGT  150

seq1  TTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGGCCTTGAACTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGGCCTTGAACTCAGA  200

seq1  AACTGGCCTGCCTCTGCCTCCCGAGTGCTGGGATTCAAGGCATATGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCCTGCCTCTGCCTCCCGAGTGCTGGGATTCAAGGCATATGCCAG  250

seq1  CACCACCTGGCTATTTTCTTTTATTGAAAGAATCCAGTATAAGGCACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCTGGCTATTTTCTTTTATTGAAAGAATCCAGTATAAGGCACAAA  300

seq1  ATATTTAACATAGTGATAGAAAAGGCAGGCACTGGAATTAATAATTTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAACATAGTGATAGAAAAGGCAGGCACTGGAATTAATAATTTGCC  350

seq1  CTCTTAGCTAATCCAAAGAAATGTGACAAAAGGTCTTGAAGAAAAATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGCTAATCCAAAGAAATGTGACAAAAGGTCTTGAAGAAAAATCCT  400

seq1  ATTAAGTATAAGTTTTATAGGGTATATGGGGGGCAGGGACAAGGAAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTATAAGTTTTATAGGGTATATGGGGGGCAGGGACAAGGAAGGAT  450

seq1  CTAAGAACCAGTGTCCTGAGAAGTATGTTTAGAATCTTAGCATCTGGAAA  500
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  CTAAGAACCAGTGTCCTGAGAAGTATGTTTAGAATCTTAGCATCTGGTTA  500

seq1  GTTAAGGGGGGGAGGATTGCTTGGAATTC  529
       ||||||||||||||||||||||||||||
seq2  -TTAAGGGGGGGAGGATTGCTTGGAATTC  528

seq1: chr11_104115312_104116292
seq2: B6Ng01-085G14.g_70_1041

seq1  GAATTCCAAGACAGCTAGGGCTACCAAGTAGAGAGAGTCTGTCTCAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACAGCTAGGGCTACCAAGTAGAGAGAGTCTGTCTCAAAAC  50

seq1  AACAACAAAATAGCTTAGAAGCATGGCATACATGGGTATGTACATGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAAATAGCTTAGAAGCATGGCATACATGGGTATGTACATGTGTC  100

seq1  TGTGTAAAACATGTTTATAACATAAGACATAGTTGAACCCGGGAACCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAAACATGTTTATAACATAAGACATAGTTGAACCCGGGAACCAAA  150

seq1  TGTTCTTGTAGACCCACAGATGGACGGGATAGGTGAGCAAGGAGAAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGTAGACCCACAGATGGACGGGATAGGTGAGCAAGGAGAAATGG  200

seq1  GTTAGTGTGTTTAAGTCCCTACCTTAACATAGATGGGAACGAACGATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGTGTTTAAGTCCCTACCTTAACATAGATGGGAACGAACGATCTA  250

seq1  CACTGCCCAGTGGGGAACTGCATGTCATGTGACAACATAGATGGAACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCCAGTGGGGAACTGCATGTCATGTGACAACATAGATGGAACTAT  300

seq1  CTGATTTATAATCCCAAATCCTTTTTATGTCAAAAATAGCCCCACTGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTATAATCCCAAATCCTTTTTATGTCAAAAATAGCCCCACTGCTA  350

seq1  TTTTTTCCTCTTGGTGCTTTCACATAGATGACTTCATTGCGTGCCCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTCTTGGTGCTTTCACATAGATGACTTCATTGCGTGCCCCTCC  400

seq1  AGGCCGTTCCAGAGCCAGTGGCACTTCCTGTTTGGAAGGGGAGGAAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGTTCCAGAGCCAGTGGCACTTCCTGTTTGGAAGGGGAGGAAATGG  450

seq1  GTGCTGCCTGTCTCCATCTCCCTACCTTCCTGGGTGCAGATGCCACACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCCTGTCTCCATCTCCCTACCTTCCTGGGTGCAGATGCCACACCC  500

seq1  TGCCCCTGCACAGTCCTCCCCCAGGCAGCTCATCATGGTGAGCGGGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTGCACAGTCCTCCCCCAGGCAGCTCATCATGGTGAGCGGGACTC  550

seq1  CTTCAGAATCCCTGCCTGCTCACATCACCCCTGCTTCCTCTGAAGGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAATCCCTGCCTGCTCACATCACCCCTGCTTCCTCTGAAGGACTC  600

seq1  AGAGAACATACTGGAGACCCTGCGGAGTTAAAGGAGCCGAGGCGATGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACATACTGGAGACCCTGCGGAGTTAAAGGAGCCGAGGCGATGTGG  650

seq1  TACCTCAGTGTTCTCCAAGTCTTTAGCAAGTACACGCGGTTACCAGCCTT  700
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TACCTCAGTGTTTTCCAAGTCTTTAGCAAGTACACGCGGTTACCAGCCTT  700

seq1  GGCAGGCTAGCTGAGCACCTGGCAGCCTCAGCCGGGAGAACCTTCCAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCTAGCTGAGCACCTGGCAGCCTCAGCCGGGAGAACCTTCCAGAT  750

seq1  GGGCTGTAGGCTTCCAGCACAGGTGCCGAGAATGATGCTCTTCCCAGGCT  800
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGGCTGTAGGCTTCCAGCACA-GTGCCGAGAATGATGCTCTTCCCAGGCT  799

seq1  CAGACCCTTGGGCTGGTCACCCATGTGGTCCAGGTCCCAGGTCTTGGGCC  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGACCCTTGGGCTGGTCACCCATGTGGTCCA-GTCCCAGGTCTTGGGCC  848

seq1  CATTTTTGGAATTTCTATTTGGAGATGTGGGGGTGGCCACTGAGCATGGG  900
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  CATTTTTGGAATTTCTATTTGGAGATGTGGGGGTGG-CACTGA-CATGGG  896

seq1  ACAGATGGTGCATTCCTGGTTCAGCTCATTGCCTCAGCACAATGAGATCG  950
      ||||||||||| |||||| |||||||||||||||||||| ||||||||| 
seq2  ACAGATGGTGC-TTCCTGTTTCAGCTCATTGCCTCAGCA-AATGAGATCT  944

seq1  TGCCAGCATGTTTGCAGATGCTTTCTGGTTT  981
      || |||| | ||||||||||| |||||||||
seq2  TG-CAGC-TTTTTGCAGATGC-TTCTGGTTT  972