BAC Information

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BAC

Clone NameB6Ng01-085M23
Chromosome11 (Build37)
Map Location 69,692,435 - 69,857,561
singlet/doubletdoublet
Overlap geneKctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4
Upstream gene9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576
Downstream geneAsgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085M23.bB6Ng01-085M23.g
ACCDH899376DH899377
length1,184770
definitionDH899376|Mus musculus domesticus DNA, BAC clone: B6Ng01-085M23, 5' end.DH899377|Mus musculus domesticus DNA, BAC clone: B6Ng01-085M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,692,435 - 69,693,603)(69,856,793 - 69,857,561)
sequence
gaattccagaagggagctctagcccccgtgttgatggaggttctccttgc
tccctatgtcaccctaggatggagtgtcccacaataggtggcttggaaca
tagtaaagaaacctcccagagagtcctggcctcttaatggttactgtagg
ataagatgtcagctccagtaaaggaaaccacagtctagggagcaggttac
atttgataagtcaaagtcctcccacctagtgctcaacccgccagagctct
gctaggtttagcctgggcaaagaggtgctatcttactttgccacacttct
gaatacagaggacccatcctcaagcaaaaacaggctagagaatccacgat
gctttcccaggataagcccccgcgtagaccttctggaccattcgtgagtc
ttgtggggtggaagggggcagctcgatctgggaaccccagctctaggctc
tggccaggtatggtggaatccctgactttcatagctaccacaccagtact
agaaagaggttttagaagagccacaggccccttggctgactcatccccct
cctctgcagtcaagtggagggcagcaccctcagtggcgcacaaagcgcaa
ggatctagagttcagaaggtcttcagggtctgggaagacagagtccaggc
ggaagccatgttccagagccacccgtagcacctcctccaggaatgtaggc
gtgttcgctacctcccgacgatcttctggccccccagtccacagtggctg
cagccccagtcttttgatactctacttcagggagttcctgggggcgggag
gcccactctagccgaaatgtggacctccttctgccctgtccccaatggcc
acaccaaatctggttgcgcatggcagccagacactcagggtcagtgcaga
agaggttggctcggaaggtgtccacctggacagagctcagctcatagtgg
tgggggccccttcgagcggagaattgcacctggccgggggctgacatcta
catctgcatggagtagggcggcctgtgatgcaggtgtacccggagtgtct
tcctaattcccgcaggcatatccaggagggggccggtatctagtaaaagt
cagccttctgcccttaagaatgggcagtttctccgtaacccaccggggca
ggtcagaacggtctcaatcgcgaaaaaaaattga
gaattcagactgactcccagttagttgcctctgaggttctggtttgcaac
agcctgtgtatgccccaggggggctcctgagaactgtaggcctgcctaac
ccaaggcaggagaagggggaaagccccccccccattgtttcaagccctga
ctctcaactctcaatgcagctctttgaacactgtgggagttgctgtccca
ggttctgaaaggacagatcaaggtaggggaccttgagagcccagggtcac
aggtggagggagctgagggggagcccctgggaccatactcacagcacatt
ctccagggagcggggacggatgaagatggcgatagggtgcaggtgggccg
cctgcagccgccgcacggcattggctgagacatcaaggatgcagtgcttc
ccctgggggcaggcagggtgggcggaggggggccagcaggtagcaggaag
gacagacagaggtgccaggaagagacagagaatataggaaggtgggggca
ggaggttggccaaagggaaagtgacagatgccaagggacatgtaggcaaa
agaagagaaagagggatgtaggcagagtgaccaatagggaggagggggga
cagaaagacggaaggccaagcacaggagggcaggaagggggcaaaacaga
gtgtaggagatgggggagagggacccgaaaggtgaaagtggagcaaaggc
aagaggggtggtagaggtggggatgcagcgggcagacctggcaggcgggc
aaagacagtgaagggagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_69692435_69693603
seq2: B6Ng01-085M23.b_48_1231

seq1  GAATTCCAGAAGGGAGCTCTAGCCCCCGTGTTGATGGAGGTTCTCCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGGGAGCTCTAGCCCCCGTGTTGATGGAGGTTCTCCTTGC  50

seq1  TCCCTATGTCACCCTAGGATGGAGTGTCCCACAATAGGTGGCTTGGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATGTCACCCTAGGATGGAGTGTCCCACAATAGGTGGCTTGGAACA  100

seq1  TAGTAAAGAAACCTCCCAGAGAGTCCTGGCCTCTTAATGGTTACTGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGAAACCTCCCAGAGAGTCCTGGCCTCTTAATGGTTACTGTAGG  150

seq1  ATAAGATGTCAGCTCCAGTAAAGGAAACCACAGTCTAGGGAGCAGGTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGTCAGCTCCAGTAAAGGAAACCACAGTCTAGGGAGCAGGTTAC  200

seq1  ATTTGATAAGTCAAAGTCCTCCCACCTAGTGCTCAACCCGCCAGAGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATAAGTCAAAGTCCTCCCACCTAGTGCTCAACCCGCCAGAGCTCT  250

seq1  GCTAGGTTTAGCCTGGGCAAAGAGGTGCTATCTTACTTTGCCACACTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGTTTAGCCTGGGCAAAGAGGTGCTATCTTACTTTGCCACACTTCT  300

seq1  GAATACAGAGGACCCATCCTCAAGCAAAAACAGGCTAGAGAATCCACGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGAGGACCCATCCTCAAGCAAAAACAGGCTAGAGAATCCACGAT  350

seq1  GCTTTCCCAGGATAAGCCCCCGCGTAGACCTTCTGGACCATTCGTGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCCAGGATAAGCCCCCGCGTAGACCTTCTGGACCATTCGTGAGTC  400

seq1  TTGTGGGGTGGAAGGGGGCAGCTCGATCTGGGAACCCCAGCTCTAGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGGTGGAAGGGGGCAGCTCGATCTGGGAACCCCAGCTCTAGGCTC  450

seq1  TGGCCAGGTATGGTGGAATCCCTGACTTTCATAGCTACCACACCAGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGGTATGGTGGAATCCCTGACTTTCATAGCTACCACACCAGTACT  500

seq1  AGAAAGAGGTTTTAGAAGAGCCACAGGCCCCTTGGCTGACTCATCCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGGTTTTAGAAGAGCCACAGGCCCCTTGGCTGACTCATCCCCCT  550

seq1  CCTCTGCAGTCAAGTGGAGGGCAGCACCCTCAGTGGCGCACAAAGCGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCAGTCAAGTGGAGGGCAGCACCCTCAGTGGCGCACAAAGCGCAA  600

seq1  GGATCTAGAGTTCAGAAGGTCTTCAGGGTCTGGGAAGACAGAGTCCAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTAGAGTTCAGAAGGTCTTCAGGGTCTGGGAAGACAGAGTCCAGGC  650

seq1  GGAAGCCATGTTCCAGAGCCACCCGTAGCACCTCCTCCAGGAATGTAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCATGTTCCAGAGCCACCCGTAGCACCTCCTCCAGGAATGTAGGC  700

seq1  GTGTTCGCTACCTCCCGACGATCTTCTGGCCCCCCAGTCCACAGTGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCGCTACCTCCCGACGATCTTCTGGCCCCCCAGTCCACAGTGGCTG  750

seq1  CAGCCCCAGTC-TTTGATACTCTACTTCAGGGAGTTCCTGGGGGCGGGAG  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCAGTCTTTTGATACTCTACTTCAGGGAGTTCCTGGGGGCGGGAG  800

seq1  GCCCACTCTAGCCGAAAATGTGGACCTCCTTCTGCCCTGTCCCCAATGGC  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCCCACTCTAGCCG-AAATGTGGACCTCCTTCTGCCCTGTCCCCAATGGC  849

seq1  CACACCAAATCT-GTTGCGCATGGCAGCCAGACACTCAGGGTCAGTGCAG  898
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CACACCAAATCTGGTTGCGCATGGCAGCCAGACACTCAGGGTCAGTGCAG  899

seq1  AAGAGGTTGGCTCGGAAGGTGTCCACCTGGACAGAGCTCAGCTCATAGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTTGGCTCGGAAGGTGTCCACCTGGACAGAGCTCAGCTCATAGTG  949

seq1  GTGGGGGCCCCTTCGAGCGGAGAAGTGCACCTGG-CGGGGGCTGACATCT  997
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  GTGGGGGCCCCTTCGAGCGGAGAATTGCACCTGGCCGGGGGCTGACATCT  999

seq1  ACATCTGCATGGAGTAGGGCGG-CTGTGGATGCAGGTGTACCCCGAGAGG  1046
      |||||||||||||||||||||| |||| ||||||||||||||| ||| | 
seq2  ACATCTGCATGGAGTAGGGCGGCCTGT-GATGCAGGTGTACCCGGAGTGT  1048

seq1  CTTCC-AATTCCCGCAGG-GCATCCAGGA-GGGGCCGG-ATCTGGTAGAA  1092
      ||||| ||||||||||||   |||||||| |||||||| |||| ||| ||
seq2  CTTCCTAATTCCCGCAGGCATATCCAGGAGGGGGCCGGTATCTAGTAAAA  1098

seq1  GTCAGCC-TCTG-CCTTAAGAA-GGGCAGTTTCTCCGT-ACCCA-CGGGG  1137
      ||||||| |||| ||||||||| ||||||||||||||| ||||| |||||
seq2  GTCAGCCTTCTGCCCTTAAGAATGGGCAGTTTCTCCGTAACCCACCGGGG  1148

seq1  CAGGTCCAGACGGCCT-AGCCGC---AAAAAATTGA  1169
      ||||||   |||| || |  |||   ||||||||||
seq2  CAGGTCAGAACGGTCTCAATCGCGAAAAAAAATTGA  1184

seq1: chr11_69856793_69857561
seq2: B6Ng01-085M23.g_69_838 (reverse)

seq1  CTTCTCCCTTCACTGTCTTTGCCCGCCTGCCCGGCTCTGCCCGCTGCAT-  49
      | ||||||||||||||||||||||||||||| || |||||||||||||| 
seq2  CATCTCCCTTCACTGTCTTTGCCCGCCTGCCAGG-TCTGCCCGCTGCATC  49

seq1  CCCACCTCTACCACCCCTCTTGCCTTTGCTCCACTTTCACCTTTCGGGT-  98
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCCACCTCTACCACCCCTCTTGCCTTTGCTCCACTTTCACCTTTCGGGTC  99

seq1  CCTCTCCCCCATCTCCTACACTCTGTTTTGCCCCCTTCCTGCCCTCCTGT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCCCATCTCCTACACTCTGTTTTGCCCCCTTCCTGCCCTCCTGT  149

seq1  GCTTGGCCTTCCGTCTTTCTGTCCCCCCTCCTCCCTATTGGTCACTCTGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCCTTCCGTCTTTCTGTCCCCCCTCCTCCCTATTGGTCACTCTGC  199

seq1  CTACATCCCTCTTTCTCTTCTTTTGCCTACATGTCCCTTGGCATCTGTCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCCCTCTTTCTCTTCTTTTGCCTACATGTCCCTTGGCATCTGTCA  249

seq1  CTTTCCCTTTGGCCAACCTCCTGCCCCCACCTTCCTATATTCTCTGTCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTTTGGCCAACCTCCTGCCCCCACCTTCCTATATTCTCTGTCTC  299

seq1  TTCCTGGCACCTCTGTCTGTCCTTCCTGCTACCTGCTGGCCCCCCTCCGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCACCTCTGTCTGTCCTTCCTGCTACCTGCTGGCCCCCCTCCGC  349

seq1  CCACCCTGCCTGCCCCCAGGGGAAGCACTGCATCCTTGATGTCTCAGCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTGCCTGCCCCCAGGGGAAGCACTGCATCCTTGATGTCTCAGCCA  399

seq1  ATGCCGTGCGGCGGCTGCAGGCGGCCCACCTGCACCCTATCGCCATCTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCGTGCGGCGGCTGCAGGCGGCCCACCTGCACCCTATCGCCATCTTC  449

seq1  ATCCGTCCCCGCTCCCTGGAGAATGTGCTGTGAGTATGGTCCCAGGGGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTCCCCGCTCCCTGGAGAATGTGCTGTGAGTATGGTCCCAGGGGCT  499

seq1  CCCCCTCAGCTCCCTCCACCTGTGACCCTGGGCTCTCAAGGTCCCCTACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCAGCTCCCTCCACCTGTGACCCTGGGCTCTCAAGGTCCCCTACC  549

seq1  TTGATCTGTCCTTTCAGAACCTGGGACAGCAACTCCCACAGTGTTCAAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTGTCCTTTCAGAACCTGGGACAGCAACTCCCACAGTGTTCAAAG  599

seq1  AGCTGCATTGAGAGTTGAGAGTCAGGGCTTGAAACAATGGGGGGGGGGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCATTGAGAGTTGAGAGTCAGGGCTTGAAACAATGGGGGGGGGGCT  649

seq1  TTCCCCCTTCTCCTGCCTTGGGTTAGGCAGGCCTACAGTTCTCAGGAGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCTTCTCCTGCCTTGGGTTAGGCAGGCCTACAGTTCTCAGGAGCC  699

seq1  CCCCTGGGGCATACACAGGCTGTTGCAAACCAGAACCTCAGAGGCAACTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGGCATACACAGGCTGTTGCAAACCAGAACCTCAGAGGCAACTA  749

seq1  ACTGGGAGTCAGTCTGAATTC  769
      |||||||||||||||||||||
seq2  ACTGGGAGTCAGTCTGAATTC  770