BAC Information

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BAC

Clone NameB6Ng01-085P07
Chromosome11 (Build37)5 (Build37)
Map Location 77,570,006 - 77,570,110151,577,241 - 151,578,320
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506
Downstream geneMyo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085P07.bB6Ng01-085P07.g
ACCDH899486DH899487
length871,087
definitionDH899486|Mus musculus domesticus DNA, BAC clone: B6Ng01-085P07, 5' end.DH899487|Mus musculus domesticus DNA, BAC clone: B6Ng01-085P07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,570,006 - 77,570,110)(151,577,241 - 151,578,320)
sequence
aaaattcccagcaaccacatgatggctcacaaccatcaactacagctaca
gtgtactcgtatatattaaataaataaataaataaat
gaattcattggtaattttgtaaactttttttactttcattttgctctgtt
tgggcatttttgtcttattgatcttttgcttgtgtattttggtttttgtg
tgtgtgtatgtgtgtttgtgttgcttgttttttgaagagagagagaaaaa
ccataaaaattgggtggaaaggacgtgaccaaaatacatgatgtaaacag
agaagtagtgtagtaacagtgaagaggaaggcagaagatagtaacaaaca
aaaggaaagaagatttctcaataatgaaaacagcacacatgttaagtata
agaaaggaaagaagttaaaaagctaaaattttattattaagaaccccctt
cgccccatgatggaatggtctcttgagtaggtggccgtccctgctgtggc
ttcctgggtgcaatagacatgtcttgtcgagaagacggtatttgacagac
tcctccatcctccttcacttaggtctctttgcccctcctctctctgcagt
gctcactgaggcttggagagggtgatcacgatggcctgtttaaggcctag
cactcagcattcactagtttgataaattatgaatttctgtagtaactgtt
cttctctacaaacagaagtttctccgaccgtggttgagccagtactaagt
tcaggacctaaacataaattattcttttatatttattgcatttatttatt
tatttatttatttatttatttatttatagagccttgctttcctgtactac
atcacaaatcccaaaaaaggaccacctcggcaggccaaatacgccatcca
ttgtatttcatgccatattttctagtaaagaaacccagttttgcacagat
attttgaggtaatgaaaaaaatgatttcttaaaaaataaatactgacttt
tgcagaatattgtcttttggaagatgtattatatgtgtacctgtcaagat
gtaaatgggtaaatcagcatcagtggtagtaaaataagaaaactggtctt
tttaataaggttaagactacttcagtcagaactgaacactgcttgaagct
gtttgaacactgttggaaggatattaggtcttggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_77570006_77570110
seq2: B6Ng01-085P07.b_59_140 (reverse)

seq1  ATTTATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTC  50
      ||||||||||||||||||||| |||||   ||||||||||||||||    
seq2  ATTTATTTATTTATTTATTTAATATATACGAGTACACTGTAGCTGT----  46

seq1  AGACACTCTAGAAGAGGGAGTCAGATGGTTGTGAGCCACCATGTGGTTGC  100
                        |||  ||||||||||||||| |||||||||||
seq2  ------------------AGT-TGATGGTTGTGAGCCATCATGTGGTTGC  77

seq1  TGGGA  105
      |||||
seq2  TGGGA  82

seq1: chr5_151577241_151578320
seq2: B6Ng01-085P07.g_68_1154

seq1  GAATTCATTGGTAATTTTGTAAACTTTTTTTACTTTCATTTTGCTCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGTAATTTTGTAAACTTTTTTTACTTTCATTTTGCTCTGTT  50

seq1  TGGGCATTTTTGTCTTATTGATCTTTTGCTTGTGTATTTTGGTTTTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATTTTTGTCTTATTGATCTTTTGCTTGTGTATTTTGGTTTTTGTG  100

seq1  TGTGTGTATGTGTGTTTGTGTTGCTTGTTTTTTGAAGAGAGAGAGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGTGTGTTTGTGTTGCTTGTTTTTTGAAGAGAGAGAGAAAAA  150

seq1  CCATAAAAATTGGGTGGAAAGGACGTGACCAAAATACATGATGTAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAAATTGGGTGGAAAGGACGTGACCAAAATACATGATGTAAACAG  200

seq1  AGAAGTAGTGTAGTAACAGTGAAGAGGAAGGCAGAAGATAGTAACAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAGTGTAGTAACAGTGAAGAGGAAGGCAGAAGATAGTAACAAACA  250

seq1  AAAGGAAAGAAGATTTCTCAATAATGAAAACAGCACACATGTTAAGTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGAAGATTTCTCAATAATGAAAACAGCACACATGTTAAGTATA  300

seq1  AGAAAGGAAAGAAGTTAAAAAGCTAAAATTTTATTATTAAGAACCCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAAAGAAGTTAAAAAGCTAAAATTTTATTATTAAGAACCCCCTT  350

seq1  CGCCCCATGATGGAATGGTCTCTTGAGTAGGTGGCCGTCCCTGCTGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCATGATGGAATGGTCTCTTGAGTAGGTGGCCGTCCCTGCTGTGGC  400

seq1  TTCCTGGGTGCAATAGACATGTCTTGTCGAGAAGACGGTATTTGACAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGTGCAATAGACATGTCTTGTCGAGAAGACGGTATTTGACAGAC  450

seq1  TCCTCCATCCTCCTTCACTTAGGTCTCTTTGCCCCTCCTCTCTCTGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATCCTCCTTCACTTAGGTCTCTTTGCCCCTCCTCTCTCTGCAGT  500

seq1  GCTCACTGAGGCTTGGAGAGGGTGATCACGATGGCCTGTTTAAGGCCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTGAGGCTTGGAGAGGGTGATCACGATGGCCTGTTTAAGGCCTAG  550

seq1  CACTCAGCATTCACTAGTTTGATAAATTATGAATTTCTGTAGTAACTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGCATTCACTAGTTTGATAAATTATGAATTTCTGTAGTAACTGTT  600

seq1  CTTCTCTACAAACAGAAGTTTCTCCGACCGTGGTTGAGCCAGTACTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTACAAACAGAAGTTTCTCCGACCGTGGTTGAGCCAGTACTAAGT  650

seq1  TCAGGACCTAAACATAAATTATTCTTTTATATTTATTGCATTTATTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACCTAAACATAAATTATTCTTTTATATTTATTGCATTTATTTATT  700

seq1  TATTTATTTATTTATTTATTTATTTATAGAGCCTTGC-TTCCTGTACTAC  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TATTTATTTATTTATTTATTTATTTATAGAGCCTTGCTTTCCTGTACTAC  750

seq1  ATCACAAAT-CCAAAAAAGGACCACCTCGGCAGGCCAAATACGCCATCCA  798
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAATCCCAAAAAAGGACCACCTCGGCAGGCCAAATACGCCATCCA  800

seq1  TTGTA-TTCATGCCATATTTTCTAGTAAAGAAACCCAG-TTTGCACAGAT  846
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGTATTTCATGCCATATTTTCTAGTAAAGAAACCCAGTTTTGCACAGAT  850

seq1  A-TTTGAGGTAATGAAAAAAATTGATTTCTTAAAAAATAAATACTGAC-T  894
      | ||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  ATTTTGAGGTAATGAAAAAAA-TGATTTCTTAAAAAATAAATACTGACTT  899

seq1  TTGCAGAATATTGTCTTTTGG-AGATGTATTATATTGTGTA-CTGTCAAG  942
      ||||||||||||||||||||| |||||||||||| |||||| ||||||||
seq2  TTGCAGAATATTGTCTTTTGGAAGATGTATTATA-TGTGTACCTGTCAAG  948

seq1  ATGTAAATTGGTAAAATCAGCATCAGTGGTAGTTAAAATAAGAAAACTGG  992
      |||||||| ||| ||||||||||||||||||| |||||||||||||||||
seq2  ATGTAAATGGGT-AAATCAGCATCAGTGGTAG-TAAAATAAGAAAACTGG  996

seq1  --CTTTTCATAGGTTTAAGACTACTTCAGGTTCAGAACTGAACACTGCTT  1040
         |||| ||| | |||||||||||||||  |||||||||||||||||||
seq2  TCTTTTTAATAAGGTTAAGACTACTTCAG--TCAGAACTGAACACTGCTT  1044

seq1  GATGCTGTTTG-ACACTGTTGGATG--TATTAGGTCTTGGATA  1080
      || |||||||| ||||||||||| |  |||||||||||||| |
seq2  GAAGCTGTTTGAACACTGTTGGAAGGATATTAGGTCTTGGAAA  1087