BAC Information

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BAC

Clone NameB6Ng01-086B03
Chromosome11 (Build37)3 (Build37)
Map Location 27,986,669 - 27,987,86741,058,861 - 41,059,397
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042377
Downstream geneEG626571, Ccdc85a, Efemp1, LOC382504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086B03.bB6Ng01-086B03.g
ACCDH899568DH899569
length1,1761,036
definitionDH899568|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B03, 5' end.DH899569|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,986,669 - 27,987,867)(41,058,861 - 41,059,397)
sequence
gaattctcataatctgctttaaattgaacctcctccaagttcaccagcac
atctccattttgacagtggcagacccatgcatggtggatttctccaaaat
cactcattgcttttgcataccttttaagtctggggaatcattctttggag
aatcacagacccatacactgggcagctcacctgggatttactggagaacc
ctgactcaaataattgagtgtttctctaatcttttagaggcaggttatct
ctcctttctgtgtttctgttccatttttaatctggatgctgagagaaaca
aaacagatgcattagatgcatattttatcacccagccaggagttaagaag
gttgctcccaacatcctaccaggaataggagacttgctagttctcatcag
atttctgaagtgggcataggtttctgggactcctgtgcacaggaaggatg
actatgtgagacagcgttttcatttctgcttttgtttatctggcaatgaa
tttttatatctatctgtgtgtattctgtttgtgctttttttgtccccttg
tccaaagtttttctttgattcctaagatgggacagtcacagaacacccca
ttctgcttagctgtaaaccattttaagaacttctactgaatggcagaaaa
ctaagctctgattgtttgtcccagcaaactcaccatattttgcaagaacg
aatgacccaaaaagaaagtagaatggcctaaggaggaaacttatcatctc
tccactatacagggtgagaaatgttgtctatgaggctaggagccactcag
aacaggtggtgtatatcacctggttgagaagtcccctgtttgttgagacc
ctttttgtccctgccagtgtaggcagagaaaagtagcccctgatgcctca
gactcccctgattccacctggagatcacctcatactcagcctgcacaccc
agaggggtgactctattataccccacccctcaggttacagggccccaaga
tgctcagggagaagtttatgactattttcaatatgacctttgcagtagaa
tttcagatacccatattcagagagacctcagctctcatagctcttttaat
ttaatcaagctcactgatcagccacctgggagactggaggaactgttcta
gtcctctcatgaccagaagaattggt
gaattccttgatccacttatatttgaccttagtacaaggagataggaatg
gatcaattctctttcttctgcatgataaccaccagttgtgccagcaccat
ttgttgaaaatgctgtcttttttccagtggatggttttatctcccttgtc
aaagttcaagtgaccataggtgtgtgggttcatttctgggtcctcaattc
tattccattggtctacttgtctgtctctataccagtaccatgcagttttt
atcacaactgctatgtagtacagctttaggtcaggcatggtgattccacc
agaggctcttttatccttgagaagagtttttgctatcctaggttttttgt
tattccagatgaatttgcagatttccctttctaatttgttgaaaaattga
gttggaattttgatggggattgcattgaatctgtagattgcttttggcaa
gatagtcattttcactatattgatcctgccaatccatgagcatgggagat
ctttctatcttctgagatctttaatttctttcttcagaaacttgaagttc
ttatcatacagatctttcacttccttagagtcacaccaaggttttttttt
attatttgtgactattcagaagggttttgtttcactaatttctttctcag
tctgtttatcctttgtgtacagaaaggtcactgacttgtttgagttaatt
ttatattctgctacttcactgaagctatttatcaggtttaggagttctct
ggtggaatttttagggtcacttatatatattattatatcatctgcaaaag
tgatattttcacttcttcctttccaatttgtatccccttgttctcctttt
gctgtcgaattgctctggctaggacttcaagtacaatgttgaataggtaa
gagaaagtggtcagccttgcctagtccctgattttagtgaattgcttcag
cttctcaccatttacattgatgttggctactggtttgctgtagatgcttt
tatcatgttaaggtatggaccttgaatgcctgatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_27986669_27987867
seq2: B6Ng01-086B03.b_45_1220 (reverse)

seq1  ACCAATTCTTTCCTCTGTCATGAAGAGGACCTAGAACAGTTCCTCACAGT  50
      ||||||||||  ||  |||||| |||||| ||||||||||||||| ||||
seq2  ACCAATTCTT--CT-GGTCATG-AGAGGA-CTAGAACAGTTCCTC-CAGT  44

seq1  CATCCCAGGTGGGCTGATCAGTGAGCTTGATTAAATATAAAAGAGCTATG  100
      | |||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  C-TCCCAGGT-GGCTGATCAGTGAGCTTGATTAAAT-TAAAAGAGCTATG  91

seq1  AGAGCTGAGGGTCTCTCTGAATATTGGGTATTCTGAAATTTCTAACTGCA  150
      |||||||| |||||||||||||| |||||| ||||||| |||| ||||||
seq2  AGAGCTGA-GGTCTCTCTGAATA-TGGGTA-TCTGAAA-TTCT-ACTGCA  136

seq1  AAGGTCATTATTGGAAAATAGGTCATTAACCTTCTCCCCTGAGCATCTTG  200
      ||||||| |||| ||||||| |||| ||| ||||| ||||||||||||||
seq2  AAGGTCA-TATT-GAAAATA-GTCA-TAAACTTCT-CCCTGAGCATCTTG  181

seq1  GGGCCCTGTAACCCTGAGGGGTGGGGTTATAATAGAGTCACCCCTCTGGG  250
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  GGGCCCTGTAA-CCTGAGGGGTGGGG-TATAATAGAGTCACCCCTCTGGG  229

seq1  TTGTGCAGGCCTGAGTATGAGGTGATCTCCAGGTGGAATCAGGGGAGTCT  300
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  -TGTGCAGG-CTGAGTATGAGGTGATCTCCAGGTGGAATCAGGGGAGTCT  277

seq1  GAGGCATCAGGGGCTACTTTTCTCTGCCTACACTGGCAGGGACAAAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATCAGGGGCTACTTTTCTCTGCCTACACTGGCAGGGACAAAAAGG  327

seq1  GTCTCAACAAACAGGGGACTTCTCAACCAGGTGATATACACCACCTGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAACAAACAGGGGACTTCTCAACCAGGTGATATACACCACCTGTTC  377

seq1  TGAGTGGCTCCTAGCCTCATAGACAACATTTCTCACCCTGTATAGTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGCTCCTAGCCTCATAGACAACATTTCTCACCCTGTATAGTGGAG  427

seq1  AGATGATAAGTTTCCTCCTTAGGCCATTCTACTTTCTTTTTGGGTCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATAAGTTTCCTCCTTAGGCCATTCTACTTTCTTTTTGGGTCATTC  477

seq1  GTTCTTGCAAAATATGGTGAGTTTGCTGGGACAAACAATCAGAGCTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGCAAAATATGGTGAGTTTGCTGGGACAAACAATCAGAGCTTAGT  527

seq1  TTTCTGCCATTCAGTAGAAGTTCTTAAAATGGTTTACAGCTAAGCAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCCATTCAGTAGAAGTTCTTAAAATGGTTTACAGCTAAGCAGAAT  577

seq1  GGGGTGTTCTGTGACTGTCCCATCTTAGGAATCAAAGAAAAACTTTGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTTCTGTGACTGTCCCATCTTAGGAATCAAAGAAAAACTTTGGAC  627

seq1  AAGGGGACAAAAAAAGCACAAACAGAATACACACAGATAGATATAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGACAAAAAAAGCACAAACAGAATACACACAGATAGATATAAAAAT  677

seq1  TCATTGCCAGATAAACAAAAGCAGAAATGAAAACGCTGTCTCACATAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCCAGATAAACAAAAGCAGAAATGAAAACGCTGTCTCACATAGTC  727

seq1  ATCCTTCCTGTGCACAGGAGTCCCAGAAACCTATGCCCACTTCAGAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCCTGTGCACAGGAGTCCCAGAAACCTATGCCCACTTCAGAAATC  777

seq1  TGATGAGAACTAGCAAGTCTCCTATTCCTGGTAGGATGTTGGGAGCAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGAACTAGCAAGTCTCCTATTCCTGGTAGGATGTTGGGAGCAACC  827

seq1  TTCTTAACTCCTGGCTGGGTGATAAAATATGCATCTAATGCATCTGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAACTCCTGGCTGGGTGATAAAATATGCATCTAATGCATCTGTTTT  877

seq1  GTTTCTCTCAGCATCCAGATTAAAAATGGAACAGAAACACAGAAAGGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTCAGCATCCAGATTAAAAATGGAACAGAAACACAGAAAGGAGA  927

seq1  GATAACCTGCCTCTAAAAGATTAGAGAAACACTCAATTATTTGAGTCAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCTGCCTCTAAAAGATTAGAGAAACACTCAATTATTTGAGTCAGG  977

seq1  GTTCTCCAGTAAATCCCAGGTGAGCTGCCCAGTGTATGGGTCTGTGATTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCAGTAAATCCCAGGTGAGCTGCCCAGTGTATGGGTCTGTGATTC  1027

seq1  TCCAAAGAATGATTCCCCAGACTTAAAAGGTATGCAAAAGCAATGAGTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGAATGATTCCCCAGACTTAAAAGGTATGCAAAAGCAATGAGTGA  1077

seq1  TTTTGGAGAAATCCACCATGCATGGGTCTGCCACTGTCAAAATGGAGATG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGAAATCCACCATGCATGGGTCTGCCACTGTCAAAATGGAGATG  1127

seq1  TGCTGGTGAACTTGGAGGAGGTTCAATTTAAAGCAGATTATGAGAATTC  1199
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTGAACTTGGAGGAGGTTCAATTTAAAGCAGATTATGAGAATTC  1176

seq1: chr3_41058861_41059397
seq2: B6Ng01-086B03.g_70_603 (reverse)

seq1  CTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATG  50
      ||||||||||||||||   ||||||||||||||| |||||||||||||||
seq2  CTGAAGAAAGAAATTA---AAGATCTCAGAAGATAGAAAGATCTCCCATG  47

seq1  CTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAG  100
      ||||||||||||||||||||| || || |||||| |||||||||||||||
seq2  CTCATGGATTGGCAGGATCAATATAGTGAAAATGACTATCTTGCCAAAAG  97

seq1  CAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTC  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTTTTC  147

seq1  AACGAATTTGAAAGAGCAATCTGCAAATTCATCTGGAATAACAAAAAACC  200
      ||| |||| ||||| | |||||||||||||||||||||||||||||||||
seq2  AACAAATTAGAAAGGGAAATCTGCAAATTCATCTGGAATAACAAAAAACC  197

seq1  TAGGATAGCAAAAACTCTTCTCAAGGATAACAGAACCTCTGGTGGAATCA  250
      |||||||||||||||||||||||||||||| ||| |||||||||||||||
seq2  TAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAGCCTCTGGTGGAATCA  247

seq1  CCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCA  300
      ||||||||||||||||||| ||||||| |||| |||||||||||||||||
seq2  CCATGCCTGACCTAAAGCTGTACTACATAGCAGTTGTGATAAAAACTGCA  297

seq1  TGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGA  350
      |||||||||||||| |||||||||| ||||||||||||||||||||| ||
seq2  TGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAGGA  347

seq1  CTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAG  400
      | |||||| ||| |||||||||||||||||||||| ||| ||||||||||
seq2  CCCAGAAATGAACCCACACACCTATGGTCACTTGAACTTTGACAAGGGAG  397

seq1  CTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGG  450
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCATCCACTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGG  447

seq1  CACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATC  500
      |||||||||| ||||||||| ||||||| | ||||||||||| |||||||
seq2  CACAACTGGTGGTTATCATGCAGAAGAAAGAGAATTGATCCATTCCTATC  497

seq1  TCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAA  537
      |||||||||||||||||||| ||||||||||||||||
seq2  TCCTTGTACTAAGGTCAAATATAAGTGGATCAAGGAA  534