BAC Information

Click to search

BAC

Clone NameB6Ng01-086G16
Chromosome11 (Build37)
Map Location 30,089,059 - 30,248,179
singlet/doubletdoublet
Overlap geneSpnb2, EG666427
Upstream geneSmek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik
Downstream geneLOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086G16.bB6Ng01-086G16.g
ACCDH899823DH899824
length1,1751,171
definitionDH899823|Mus musculus domesticus DNA, BAC clone: B6Ng01-086G16, 5' end.DH899824|Mus musculus domesticus DNA, BAC clone: B6Ng01-086G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,246,985 - 30,248,179)(30,089,059 - 30,090,243)
sequence
gaattctttgtttagctctgtgccccatttttaataagataatttgattt
tctggagtccaccttcttgagttctttatatatattgtatattagtaccc
taaagtaatatttttctaccaagacatatcagctaattcagggaaactta
cagtaaataagtacttaatgagttagagttttcactctctttaaaagtat
aacattttattaaattatctatatgtgttgtgatgttcactttgtggttc
ctccatacttggatagcattgcatgctaacaagtcttgttttgtctggat
gtatcagttactgagatgtaatattggaaaatataataaatgtttaaacc
ataagtacattagattgtgtggtcatcaaggagccttagggtgttatggc
cgtgggcttcttcagccttggggccttatggccgtgggcttcttcaataa
ctgggtaatgccatcaaggttctatcccagattttccttctcaaagaatt
aattgtgctgcaagttggctggcacagcgtcaagatactatcctcaaggt
tagaaagcagagtacagtggacacaagcagaactgattctcctctgtgac
gttcagttggtaaaatgcttgaaagatgtggctgattttttcctcatttt
tctacttattaaatggacatatattactttgataggtaattatccaaatt
tttttcaataagcacaacttgaatagaaacaagcagaacatgttagccag
agcatgggtagcctctgtgctgtgatcctcacacagcatggagagcaagg
gatgtgaagatgaatataagccaaggctcgaggaaaccagagcatgggac
agcacattagtacatgggttcaggggtttgtgtacttctgaagcaagata
gcaaacaggtcaagtcagtaagaaccactccagagagtgaaaagataggg
ttttttctttgattgtggcaagtatttctattattaatcttgaataatta
ctctatactagaatatgccattgaatataatataattttgtgtattgcag
tattgtgacctgagtaagaacaaaacaaaaatagtctgtgctgtcagcta
atgatgatcatgggcttccatggaggagctaagaaagttgccaggagctt
agatctgccaccttataggtgaaca
gaattcagaagatgatattacataccctgggccaccatgtggatgctggg
aactgaacttaggtcatcacaagagtgacaaatacaagctaggtggtggt
ggcgcatgcctttaatcccagcacttgggaagcagaggcaggcagatttc
tgagttcgaggccagcctggtctacaaagtgagttcctggacagccaggg
ctatacaaagaaaccctgtctcgaaaaaaacaaaaaacaaaaaccaaaaa
ccaaaaaaaaaaagagagagagagagagtgactagtgctcttgactgctg
aaccatgtctccagccccaagaataattctgtaattctcctctaatacca
agtgggtaagtaaagtggaattttaaaaaatctcaccaatttctttaact
gcagaatttaaaagttaaaaaaaaaaaaatcccagccaaaatgatgctaa
gacttacaaagctaagaactagccattttttttaatcctttaatttggcc
agatgtgttcaagcttgtctttaatcccaacacttagcaggcagaggtga
gcagatttctgtgagtttgaggccagcctggcctacagagtgcgttctac
caagccagccaccaactacatagtgagatccattcaatcaatcaatacat
acatgcacaagttttaaaagttctttaatcaaaaaaaaatattaaactgt
aactattatacatttggtcaggttacttttataattaaacaatattgcta
aacaaatcaaaaaatgtatgcataacatgaataatatgtaaaagcacaaa
cttcaaacctcagaggtcataaccttttcaggactgtctcttcctgtgtt
ctttggaggaacaggggaaggaccatttccaagactgtttcttaaacttg
aattgcttaaaaccctccagaagatcttgttaaaatggggttctaaccca
gcagtatggagcagacctgaatggcggcatttctagcagtcttaaatcac
ctacagaccacgtccacaaaaaggtctccaaagttcctggtgcactgtag
taagctgccaccccagcgaatgcgctgaggactggccttcctgcatcctc
tttggcccaccctttcaggaacagggatctttgtcaggagcataactact
taaattgactgctcagcaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_30246985_30248179
seq2: B6Ng01-086G16.b_43_1217 (reverse)

seq1  TGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTC  50
      |||| |||||||| ||| |||||||   | |||||| |||| ||||||| 
seq2  TGTT-CACCTATAAGGTGGCAGATC---TAAGCTCC-TGGCAACTTTCT-  44

seq1  TAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACAGCACAG  100
      ||||||||||| ||| ||||| ||||| ||| ||||||||||||||||||
seq2  TAGCTCCTCCA-TGGAAGCCC-ATGAT-CAT-CATTAGCTGACAGCACAG  90

seq1  ACTATTTTTGTTTTGTTCTGTACTTCAGGTTCACAATACTTGCAATACAC  150
      ||||||||||||||||||| ||| ||||| ||||||||| ||||||||||
seq2  ACTATTTTTGTTTTGTTCT-TAC-TCAGG-TCACAATAC-TGCAATACAC  136

seq1  AAAATTAATATTATATTTCAATGGCATATTCTAGTATTAGAGTAATTTAT  200
      |||||| |||||||| |||||||||||||||||||| |||||||| ||||
seq2  AAAATT-ATATTATA-TTCAATGGCATATTCTAGTA-TAGAGTAA-TTAT  182

seq1  TCAAGATTAATAATAGAAATACTTGCCACAATCAAAGAAAAAACCCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAAGATTAATAATAGAAATACTTGCCACAATCAAAGAAAAAACCCTAT-  231

seq1  CTTTTTCACTCTCTGGAGTGGTTCTTACTGACTTGACCTGTTTGCTATCT  300
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTTTTCACTCTCTGGAGTGGTTCTTACTGACTTGACCTGTTTGCTATCT  280

seq1  TGCTTCAGAAGTACACAAACCCCTGAACCCATGTACTAATGTGCTGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAGAAGTACACAAACCCCTGAACCCATGTACTAATGTGCTGTCCC  330

seq1  ATGCTCTGGTTTCCTCGAGCCTTGGCTTATATTCATCTTCACATCCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGGTTTCCTCGAGCCTTGGCTTATATTCATCTTCACATCCCTTG  380

seq1  CTCTCCATGCTGTGTGAGGATCACAGCACAGAGGCTACCCATGCTCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCATGCTGTGTGAGGATCACAGCACAGAGGCTACCCATGCTCTGGC  430

seq1  TAACATGTTCTGCTTGTTTCTATTCAAGTTGTGCTTATTGAAAAAAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGTTCTGCTTGTTTCTATTCAAGTTGTGCTTATTGAAAAAAATTT  480

seq1  GGATAATTACCTATCAAAGTAATATATGTCCATTTAATAAGTAGAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATTACCTATCAAAGTAATATATGTCCATTTAATAAGTAGAAAAAT  530

seq1  GAGGAAAAAATCAGCCACATCTTTCAAGCATTTTACCAACTGAACGTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAAATCAGCCACATCTTTCAAGCATTTTACCAACTGAACGTCAC  580

seq1  AGAGGAGAATCAGTTCTGCTTGTGTCCACTGTACTCTGCTTTCTAACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAATCAGTTCTGCTTGTGTCCACTGTACTCTGCTTTCTAACCTT  630

seq1  GAGGATAGTATCTTGACGCTGTGCCAGCCAACTTGCAGCACAATTAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATAGTATCTTGACGCTGTGCCAGCCAACTTGCAGCACAATTAATTC  680

seq1  TTTGAGAAGGAAAATCTGGGATAGAACCTTGATGGCATTACCCAGTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAAGGAAAATCTGGGATAGAACCTTGATGGCATTACCCAGTTATT  730

seq1  GAAGAAGCCCACGGCCATAAGGCCCCAAGGCTGAAGAAGCCCACGGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGCCCACGGCCATAAGGCCCCAAGGCTGAAGAAGCCCACGGCCAT  780

seq1  AACACCCTAAGGCTCCTTGATGACCACACAATCTAATGTACTTATGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTAAGGCTCCTTGATGACCACACAATCTAATGTACTTATGGTTT  830

seq1  AAACATTTATTATATTTTCCAATATTACATCTCAGTAACTGATACATCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTATTATATTTTCCAATATTACATCTCAGTAACTGATACATCCA  880

seq1  GACAAAACAAGACTTGTTAGCATGCAATGCTATCCAAGTATGGAGGAACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAACAAGACTTGTTAGCATGCAATGCTATCCAAGTATGGAGGAACC  930

seq1  ACAAAGTGAACATCACAACACATATAGATAATTTAATAAAATGTTATACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGAACATCACAACACATATAGATAATTTAATAAAATGTTATACT  980

seq1  TTTAAAGAGAGTGAAAACTCTAACTCATTAAGTACTTATTTACTGTAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAGAGTGAAAACTCTAACTCATTAAGTACTTATTTACTGTAAGT  1030

seq1  TTCCCTGAATTAGCTGATATGTCTTGGTAGAAAAATATTACTTTAGGGTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGAATTAGCTGATATGTCTTGGTAGAAAAATATTACTTTAGGGTA  1080

seq1  CTAATATACAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATACAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATC  1130

seq1  AAATTATCTTATTAAAAATGGGGCACAGAGCTAAACAAAGAATTC  1195
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATCTTATTAAAAATGGGGCACAGAGCTAAACAAAGAATTC  1175

seq1: chr11_30089059_30090243
seq2: B6Ng01-086G16.g_66_1236

seq1  GAATTCAGAAGATGATATTACATACCCTGGGCCACCATGTGGATGCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGATGATATTACATACCCTGGGCCACCATGTGGATGCTGGG  50

seq1  AACTGAACTTAGGTCATCACAAGAGTGACAAATACAAGCTAGGTGGTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAACTTAGGTCATCACAAGAGTGACAAATACAAGCTAGGTGGTGGT  100

seq1  GGCGCATGCCTTTAATCCCAGCACTTGGGAAGCAGAGGCAGGCAGATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCATGCCTTTAATCCCAGCACTTGGGAAGCAGAGGCAGGCAGATTTC  150

seq1  TGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCTGGACAGCCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCTGGACAGCCAGGG  200

seq1  CTATACAAAGAAACCCTGTCTCGAAAAAAACAAAAAACAAAAACCAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAAAGAAACCCTGTCTCGAAAAAAACAAAAAACAAAAACCAAAAA  250

seq1  CCAAAAAAAAAAAGAGAGAGAGAGAGAGTGACTAGTGCTCTTGACTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAAAAAAGAGAGAGAGAGAGAGTGACTAGTGCTCTTGACTGCTG  300

seq1  AACCATGTCTCCAGCCCCAAGAATAATTCTGTAATTCTCCTCTAATACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGTCTCCAGCCCCAAGAATAATTCTGTAATTCTCCTCTAATACCA  350

seq1  AGTGGGTAAGTAAAGTGGAATTTTAAAAAATCTCACCAATTTCTTTAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTAAGTAAAGTGGAATTTTAAAAAATCTCACCAATTTCTTTAACT  400

seq1  GCAGAATTTAAAAGTTAAAAAAAAAAAAATCCCAGCCAAAATGATGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATTTAAAAGTTAAAAAAAAAAAAATCCCAGCCAAAATGATGCTAA  450

seq1  GACTTACAAAGCTAAGAACTAGCCATTTTTTTTAATCCTTTAATTTGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACAAAGCTAAGAACTAGCCATTTTTTTTAATCCTTTAATTTGGCC  500

seq1  AGATGTGTTCAAGCTTGTCTTTAATCCCAACACTTAGCAGGCAGAGGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGTTCAAGCTTGTCTTTAATCCCAACACTTAGCAGGCAGAGGTGA  550

seq1  GCAGATTTCTGTGAGTTTGAGGCCAGCCTGGCCTACAGAGTGCGTTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTCTGTGAGTTTGAGGCCAGCCTGGCCTACAGAGTGCGTTCTAC  600

seq1  CAAGCCAGCCACCAACTACATAGTGAGATCCATTCAATCAATCAATACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAGCCACCAACTACATAGTGAGATCCATTCAATCAATCAATACAT  650

seq1  ACATGCACAAGTTTTAAAAGTTCTTTAATCAAAAAAAAATATTAAACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACAAGTTTTAAAAGTTCTTTAATCAAAAAAAAATATTAAACTGT  700

seq1  AACTATTATACATTTGGTCAGGTTACTTTTATAATTAAACAATATTGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTATACATTTGGTCAGGTTACTTTTATAATTAAACAATATTGCTA  750

seq1  AACAAATCAAAAAATGTATGCATAACATGAATAATATGTAAAAGCACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCAAAAAATGTATGCATAACATGAATAATATGTAAAAGCACAAA  800

seq1  CTTCAAACCTCAGAGGTCATAACCTTTTCAGGACTGTCTCTTCCTGTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAACCTCAGAGGTCATAACCTTTTCAGGACTGTCTCTTCCTGTGTT  850

seq1  CTTTGGAGGAACAAGGGGAAGGACCATTTCCAAGACTGTTTCTTAAACTT  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAGGAAC-AGGGGAAGGACCATTTCCAAGACTGTTTCTTAAACTT  899

seq1  GAAATTGCTTAAAACCCTCCAGAAGATCTTGTTAAAATGGGGTTCTAACC  950
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AATTGCTTAAAACCCTCCAGAAGATCTTGTTAAAATGGGGTTCTAACC  948

seq1  CAGCAAGTATGGAGCAGACCTGAATGGCGGCATTTCTAGCAAGTCTTAAA  1000
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGC-AGTATGGAGCAGACCTGAATGGCGGCATTTCTAGC-AGTCTTAAA  996

seq1  TCACCTACAGACCACGTCCAACAAAAAGGTCTCCAAAGTTCCTGGTGCAC  1050
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCACCTACAGACCACGTCC-ACAAAAAGGTCTCCAAAGTTCCTGGTGCAC  1045

seq1  TGTAGTAAGGCTGCCACCCCAGCGAATGCGCTGAGGACTGG-CTTCCTGC  1099
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  TGTAGTAA-GCTGCCACCCCAGCGAATGCGCTGAGGACTGGCCTTCCTGC  1094

seq1  ATCCTCTTATGGGCCACACCTTTCA-GAACAGGGATCTTGTTCAGGAGCC  1148
      |||||||| ||| |||| ||||||| |||||||||||||  |||||||| 
seq2  ATCCTCTT-TGGCCCAC-CCTTTCAGGAACAGGGATCTTTGTCAGGAGC-  1141

seq1  AATAACTACCTTTAAATTTAAACCTGGCTCAGCACCC  1185
       ||||||||  ||||||| |   || |||||||||||
seq2  -ATAACTAC--TTAAATTGA---CT-GCTCAGCACCC  1171