BAC Information

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BAC

Clone NameB6Ng01-087H03
Chromosome11 (Build37)16 (Build37)
Map Location 47,629,000 - 47,629,21220,477,464 - 20,477,705
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTimd4, Sgcd, LOC628753, LOC100039647
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087H03.bB6Ng01-087H03.g
ACCDH900570DH900571
length213368
definitionDH900570|Mus musculus domesticus DNA, BAC clone: B6Ng01-087H03, 5' end.DH900571|Mus musculus domesticus DNA, BAC clone: B6Ng01-087H03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(47,629,000 - 47,629,212)(20,477,464 - 20,477,705)
sequence
ttataatggcacccaaaataactgagaaagagatttgaatgtaatctaag
taagctccctgtggggtttagacccacttagagtacccgctagggtttta
tacaacagagcgagcacacatggctaagaaagtgagagtgaagtgctatc
acagggagggctaggctaagcagagcctctaagagcctggggtgggggag
atggggagggata
tctcctattgaacagaccttgagtctgtttcagtaattgctggtggatct
tgggatataagttccactattgcatttatcagaatgtcttgccatgctgg
ccattgttgtggtcccttagtgttagaactggacaggactttgattgctt
tgctcccccaattacttacatggctccttctgaatctatgaagctttttc
tcagcaaggaagcttccaagtcatttccaattggttcctataggaattca
cctttttggggggaactcaaaaagggcaatagcattagcctctattattt
gcaggtctcttagaatcttctgtccaactgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_47629000_47629212
seq2: B6Ng01-087H03.b_51_263 (reverse)

seq1  TATCCCTCCCCATCTCCCCCACCCCAGGCTCTTAGAGGCTCTGCTTAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTCCCCATCTCCCCCACCCCAGGCTCTTAGAGGCTCTGCTTAGCC  50

seq1  TAGCCCTCCCTGTGATAGCACTTCACTCTCACTTTCTTAGCCATGTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTCCCTGTGATAGCACTTCACTCTCACTTTCTTAGCCATGTGTGC  100

seq1  TCGCTCTGTTGTATAAAACCCTAGCGGGTACTCTAAGTGGGTCTAAACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCTGTTGTATAAAACCCTAGCGGGTACTCTAAGTGGGTCTAAACCC  150

seq1  CACAGGGAGCTTACTTAGATTACATTCAAATCTCTTTCTCAGTTATTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGAGCTTACTTAGATTACATTCAAATCTCTTTCTCAGTTATTTTG  200

seq1  GGTGCCATTATAA  213
      |||||||||||||
seq2  GGTGCCATTATAA  213

seq1: chr16_20477464_20477705
seq2: B6Ng01-087H03.g_392_441 (reverse)

seq1  CACACACACACACACACACACACACACACACACATACAC-----GGCAGA  45
      |||||||||||||||||||||||||||||||||| ||||     | ||||
seq2  CACACACACACACACACACACACACACACACACACACACAGTTGGACAGA  50

seq1  TAGCCCCCCATACACACACACACTAGGCAAACAGCCCTTCCCCACTAGGC  95
                                                        
seq2  --------------------------------------------------  50

seq1  AGACAGCTCTCTAGCTTGCTCTCTCTCTCTCTCTCACACATACACGGAAG  145
                                                        
seq2  --------------------------------------------------  50

seq1  ATAGCCCCCCCACACACACACACACTAGGCAAACAGCCCTTCCCCACTAG  195
                                                        
seq2  --------------------------------------------------  50

seq1  GCAGACAGCCCCACACACTCACACACACACACACACACAGGGACAGA  242
                                                     
seq2  -----------------------------------------------  50