BAC Information

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BAC

Clone NameB6Ng01-087J18
Chromosome11 (Build37)
Map Location 65,532,134 - 65,662,687
singlet/doubletdoublet
Overlap geneMap2k4, Zkscan6, Dnahc9
Upstream geneLOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd
Downstream geneGm879, LOC668323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087J18.bB6Ng01-087J18.g
ACCDH900686DH900687
length9331,191
definitionDH900686|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J18, 5' end.DH900687|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,532,134 - 65,533,107)(65,661,489 - 65,662,687)
sequence
gaattcttttgcaagaatgaaattacagcctacgaagaaaagtggataaa
actggataatcatgtgacgcaaaatgagccccattccgaaggcaaaggct
gcatattttttgccacacatcaaagatagacagacagacacgcgagcaca
tgcgcacaggcacacacgccacacactacaagtagaaaaggaacttatag
gagaggaagaggtcgaaaggtaagggtgaagcgaacaggacaatgtaatg
agacactgacaggagaacagaaagagggaccattagaaaatggaaggtga
tcagccagaaggaggaagggaatgagggaaggacaggtgggtgggacaaa
aaaagaacaaactgtaatgaaatacacttataaaggaggctagtgggagg
aaaggcaagggggaaagtgacgaagtctattttaggaaaaatgtattttt
taaaaaccataacacacatttcattactaaccgcccccccccacccaatt
acacacatataattcttaagaatctcacattgaagtactgacacagagct
gtgtcacatccttgatagaaaacataaggaaaagaaacccacggcagtca
gaagcagcaccacaagacacataatatttcatatggttagatagatgtac
tatacaagctttagtctaacttctttggcttccaaacatcccagcgaaga
acctgcagttacgaggatggttctgtactatacagatgcactttgtcttg
acgtagaattaatcctacctcctcttactcctcagttagattgcattacc
agctgaccccagtcgtatcccatacctctgtgaagcgtcacatgaactga
acattgtatggccatcctactcgatttctactccatcttagacgaggtgt
tttgttctttttcattccagttgaccgatctct
gaattcaaaatgaggaaactcttacaagaaatgagcaagttgtaacacct
tgaaaggctttgcccaggatcccaatacatgagcatcccctggtgtctgt
ggaccactgacctaggcatcctcgaggatgctgctcacgtcttgagtccc
acagtaataggacttacacatttccaaagggctgagatggaagcccttcc
tactacttcccttaagtctaccagatcagagatggtcctagggcacctgc
caaggatccaggaacaggctggagggaatgcaaagctaacaacacagatt
gaaaaagtgagcagtatttaaactagttggtaacaacaccaatagatctt
gaaagccccttcagggagcttaacttggaaaatagcttcttggggttata
aaatgaaccatgaaggggtacaaaaaacaatcagtgaagaaagtagcctc
catgagctggttaagactcttaggcagactaaccgtgactaccagaatta
actagagatgcatttaggcagcgctgttttttaaaactggctgctttctc
cagcccagcctcgccctcattttgtatgggagtttgtttggggcactggt
tcagtgtgagaaaaagatggtgctgagtagtaactgtgcctggtatgtga
agtaagcaaagatccagcaatccaccaccaggacagtggtgctgtgtccc
ttgcacaggaagggagacaagttggttactctttgaccaatctcgccttt
ggtttcagtatattgatgctgagctgccccctgagtctccctacctatat
ggcctccatccaaacgccgagattggcttcctgacccagacatcggaaaa
actcttccgaaccgtgctggagatgcagcctcgggacagccaggctggag
atggagctggcatcacaagggaagaaaaggtgagtatggcttgaaatagt
ttgaggaacccaaggcttgcaagaagtcacctttctgcaaataacttcag
tagtggtagggtgactaacatatacacaagccacttagatgctcccctgc
ttcaccatcccttcctatctacttcagccaatccctgacccttctgaatt
aattagaagaagtccttggccaattggatggagatgttacagtcccaagt
ccggaattatttggctcctaatgaagtaagggatggtcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_65532134_65533107
seq2: B6Ng01-087J18.b_42_974

seq1  GAATTCTTTTGTAAAGAATGAAATTACAGCCTACACAAGAAAAGTGGATA  50
      |||||||||||  |||||||||||||||||||||  ||||||||||||||
seq2  GAATTCTTTTG-CAAGAATGAAATTACAGCCTAC-GAAGAAAAGTGGATA  48

seq1  AAACTGGATAATCATATGACGCAAAATGAGCCAGATTCAGAAGGCAAAGG  100
      ||||||||||||||| ||||||||||||||||  |||| |||||||||||
seq2  AAACTGGATAATCATGTGACGCAAAATGAGCCCCATTCCGAAGGCAAAGG  98

seq1  CTGCATATTTTTTGCCACACATAAAAGATAGACAGACAGACACGCGAGCA  150
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGCATATTTTTTGCCACACATCAAAGATAGACAGACAGACACGCGAGCA  148

seq1  CATGCGCACAGGCACACACACCACACACTAGAAGTAGAAAAGGAACTTAG  200
      ||||||||||||||||||| |||||||||| |||||||||||||||||| 
seq2  CATGCGCACAGGCACACACGCCACACACTACAAGTAGAAAAGGAACTTAT  198

seq1  AGGAGAGGAAGAGGTCGAAAGGTAAGGGTGAAGCGAACAGGACAATGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGAAGAGGTCGAAAGGTAAGGGTGAAGCGAACAGGACAATGTAA  248

seq1  TGAGACACTGACAGGAGAACAGAAAGAGGGACCATTAGAAAATGGAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACACTGACAGGAGAACAGAAAGAGGGACCATTAGAAAATGGAAGGT  298

seq1  GATCAGCCAGAAGGAGGAAGGGAATGAGGGAAGGACAGGTGGGTGGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCCAGAAGGAGGAAGGGAATGAGGGAAGGACAGGTGGGTGGGACA  348

seq1  AAAAAAGAACAAACTGTAATGAAATACACTTATAAAGGAGGCTAGTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAACAAACTGTAATGAAATACACTTATAAAGGAGGCTAGTGGGA  398

seq1  GGAAAGGCAAGGGGGAAAGTGACAAAGTCTATTTTAGGAAAAATGTATTT  450
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGAAAGGCAAGGGGGAAAGTGACGAAGTCTATTTTAGGAAAAATGTATTT  448

seq1  TTTAAAAACCATAACACACATTTCATTACTAACCG-CCCCCCCCACCAAA  499
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  TTTAAAAACCATAACACACATTTCATTACTAACCGCCCCCCCCCACCCAA  498

seq1  TTAAACA-AAATAATTCTTAAAAATCT-ACATTGAAGTACTGACACAGAG  547
      ||| ||| | ||||||||||| ||||| ||||||||||||||||||||||
seq2  TTACACACATATAATTCTTAAGAATCTCACATTGAAGTACTGACACAGAG  548

seq1  CTGTGTCACATCCTTAATAGAAAACATAAAGGAAAAAAAACCAATGGCAG  597
      ||||||||||||||| ||||||||||| |||||||| ||||| | |||||
seq2  CTGTGTCACATCCTTGATAGAAAACAT-AAGGAAAAGAAACCCACGGCAG  597

seq1  TCAGAAGCAGCAACCACAAAGACACAGAAATATTTACATATGGCTAGATA  647
      ||||||||||| ||||| ||||||||  ||||||| ||||||| ||||||
seq2  TCAGAAGCAGC-ACCAC-AAGACACA-TAATATTT-CATATGGTTAGATA  643

seq1  GATGTTACTATAAGAAGCTTTAAGTCTAAACTTCAGTGGCATTCCAAAAC  697
      |||| |||||| | ||||||| ||||| ||||||  |||| |||||||  
seq2  GATG-TACTAT-ACAAGCTTT-AGTCT-AACTTCTTTGGC-TTCCAAA--  686

seq1  AATCCCAAGCAGAAAGAACCTGCAAGTTAACGAGGATGGTTCTGTACTAT  747
       ||||| |||   |||||||||| |||| |||||||||||||||||||||
seq2  CATCCC-AGC--GAAGAACCTGC-AGTT-ACGAGGATGGTTCTGTACTAT  731

seq1  AACAAGAGGCAACTTTGTTATTAATGTAGAATTAATCCTACCTCCTCTTA  797
      |   ||| || |||||| | || | |||||||||||||||||||||||||
seq2  A--CAGATGC-ACTTTG-TCTTGACGTAGAATTAATCCTACCTCCTCTTA  777

seq1  CTCATCCAAGTTAGATATGCATTTACCAGCTAAAACCCAAGCCGTTTCCC  847
      ||| ||  |||||||| |||| |||||||||   |||| || ||| | ||
seq2  CTCCTC--AGTTAGAT-TGCA-TTACCAGCT--GACCCCAGTCGTAT-CC  820

seq1  CATACCTCTCTGAAGAGTGCACCATAGAACTGAACAATGTATGGGCAATC  897
      ||||||||| ||||| || || ||| |||||||||| ||||| ||| |||
seq2  CATACCTCTGTGAAGCGT-CA-CAT-GAACTGAACATTGTAT-GGCCATC  866

seq1  ACTACTCCGCATTACTACATCCAAATCCATGAGAAGTTGTTTTTGTTCTT  947
       ||||||   ||| |||| |||  |||   ||  || || ||||||||||
seq2  -CTACTC--GATTTCTAC-TCC--ATCTTAGACGAGGTG-TTTTGTTCTT  909

seq1  TTTCATCCACAGTTGACCGAATTCTCT  974
      |||||| | |||||||||||  |||||
seq2  TTTCATTC-CAGTTGACCGA--TCTCT  933

seq1: chr11_65661489_65662687
seq2: B6Ng01-087J18.g_68_1258 (reverse)

seq1  CCTGACCTTCCCTTACTTCATTAGAGAAGCCAAATAAAATCTGACTTTGG  50
      ||||||| ||||||||||||||  || ||||||||||   | ||||| ||
seq2  CCTGACCATCCCTTACTTCATT--AGGAGCCAAATAATTCCGGACTTGGG  48

seq1  ACTGGTAAAACCATCTGCCAATCCCAATGG-CAAGGACTTCCTCTGATTT  99
      ||| ||||   |||||  | |||| | ||| |||||||||| ||| ||| 
seq2  ACT-GTAA---CATCT--CCATCCAATTGGCCAAGGACTTCTTCTAATTA  92

seq1  AATCAG-AGGGTCAGGGATGGGCTGAAGTAGATAGGGAGGGATTGTTGGA  148
      | |||| |||||||||||| |||||||||||||||| ||||| || || |
seq2  ATTCAGAAGGGTCAGGGATTGGCTGAAGTAGATAGGAAGGGA-TGGTGAA  141

seq1  GCAGGGGAGCATCTAAGTTGGCTTGTGTATATGTTAGTCACCCTACCACT  198
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCAGGGGAGCATCTAAG-TGGCTTGTGTATATGTTAGTCACCCTACCACT  190

seq1  ACTGAAGTTATTTGCAGAAAGGTGACTTCTTGCAAGCCTTGGGTTCCTCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTTATTTGCAGAAAGGTGACTTCTTGCAAGCCTTGGGTTCCTCA  240

seq1  AACTATTTCAAGCCATACTCACCTTTTCTTCCCTTGTGATGCCAGCTCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTCAAGCCATACTCACCTTTTCTTCCCTTGTGATGCCAGCTCCA  290

seq1  TCTCCAGCCTGGCTGTCCCGAGGCTGCATCTCCAGCACGGTTCGGAAGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCCTGGCTGTCCCGAGGCTGCATCTCCAGCACGGTTCGGAAGAG  340

seq1  TTTTTCCGATGTCTGGGTCAGGAAGCCAATCTCGGCGTTTGGATGGAGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCGATGTCTGGGTCAGGAAGCCAATCTCGGCGTTTGGATGGAGGC  390

seq1  CATATAGGTAGGGAGACTCAGGGGGCAGCTCAGCATCAATATACTGAAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGGTAGGGAGACTCAGGGGGCAGCTCAGCATCAATATACTGAAAC  440

seq1  CAAAGGCGAGATTGGTCAAAGAGTAACCAACTTGTCTCCCTTCCTGTGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCGAGATTGGTCAAAGAGTAACCAACTTGTCTCCCTTCCTGTGCA  490

seq1  AGGGACACAGCACCACTGTCCTGGTGGTGGATTGCTGGATCTTTGCTTAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACACAGCACCACTGTCCTGGTGGTGGATTGCTGGATCTTTGCTTAC  540

seq1  TTCACATACCAGGCACAGTTACTACTCAGCACCATCTTTTTCTCACACTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATACCAGGCACAGTTACTACTCAGCACCATCTTTTTCTCACACTG  590

seq1  AACCAGTGCCCCAAACAAACTCCCATACAAAATGAGGGCGAGGCTGGGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTGCCCCAAACAAACTCCCATACAAAATGAGGGCGAGGCTGGGCT  640

seq1  GGAGAAAGCAGCCAGTTTTAAAAAACAGCGCTGCCTAAATGCATCTCTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGCAGCCAGTTTTAAAAAACAGCGCTGCCTAAATGCATCTCTAG  690

seq1  TTAATTCTGGTAGTCACGGTTAGTCTGCCTAAGAGTCTTAACCAGCTCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTGGTAGTCACGGTTAGTCTGCCTAAGAGTCTTAACCAGCTCAT  740

seq1  GGAGGCTACTTTCTTCACTGATTGTTTTTTGTACCCCTTCATGGTTCATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTACTTTCTTCACTGATTGTTTTTTGTACCCCTTCATGGTTCATT  790

seq1  TTATAACCCCAAGAAGCTATTTTCCAAGTTAAGCTCCCTGAAGGGGCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACCCCAAGAAGCTATTTTCCAAGTTAAGCTCCCTGAAGGGGCTTT  840

seq1  CAAGATCTATTGGTGTTGTTACCAACTAGTTTAAATACTGCTCACTTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTATTGGTGTTGTTACCAACTAGTTTAAATACTGCTCACTTTTT  890

seq1  CAATCTGTGTTCTTAGCTTTGCATTCCCTCCAGCCTGTTCCTGGATCCTT  948
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGTGTTGTTAGCTTTGCATTCCCTCCAGCCTGTTCCTGGATCCTT  940

seq1  GGCAGGTGCCCTAGGACCATCTCTGATCTGGTAGACTTAAGGGAAGTAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGCCCTAGGACCATCTCTGATCTGGTAGACTTAAGGGAAGTAGT  990

seq1  AGGAAGGGCTTCCATCTCAGCCCTTTGGAAATGTGTAAGTCCTATTACTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGCTTCCATCTCAGCCCTTTGGAAATGTGTAAGTCCTATTACTG  1040

seq1  TGGGACTCAAGACCTGAGCAGCATCCTCGAGGATGCTTAGGTCAGTGGTC  1098
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  TGGGACTCAAGACGTGAGCAGCATCCTCGAGGATGCCTAGGTCAGTGGTC  1090

seq1  CACAGACACCAGGGGATGCTCATGTATTGGGATCCTGGGCAAAGCCTTTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACACCAGGGGATGCTCATGTATTGGGATCCTGGGCAAAGCCTTTC  1140

seq1  AAGGTGTTACAACTTGCTCATTTCTTGTAAGAGTTTCCTCATTTTGAATT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTTACAACTTGCTCATTTCTTGTAAGAGTTTCCTCATTTTGAATT  1190

seq1  C  1199
      |
seq2  C  1191