BAC Information

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BAC

Clone NameB6Ng01-087N12
Chromosome11 (Build37)
Map Location 115,060,399 - 115,224,816
singlet/doubletdoublet
Overlap geneTmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik
Upstream geneLOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9
Downstream geneCdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087N12.bB6Ng01-087N12.g
ACCDH900856DH900857
length5801,088
definitionDH900856|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N12, 5' end.DH900857|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,224,231 - 115,224,816)(115,060,399 - 115,061,477)
sequence
tagaagtaaaatttatcatggaaaatggttgccttggttatttgcctgta
tgattgtctatctctcaaggaccataagtatgtattttaatttttcattt
ttatttatgtgtatttctttgtatgtatgccacaagtgggcatgtgccta
tagaggccagaagtgggcgtcagacccctggaattacagagaaccaaacc
tgaatctcctggaagagcagcatacactcttaacctctgagccatctctc
tagctcccacataaactcttcacctctgagcccgctctctagttcccatg
accacatgtattttaaaggcttgtctcaataggacctttggaactttgtt
tcttacgttagttcctaagttttgagacaggcacttactatgtaactctg
cctgtcctggaactcactctgtagaccaggcaggcctcaaactcagaaag
atccacctgcctctgcccgccaagtgttgggattaaaggtgtatgccact
acactcagcctgttaaaattaaaaaacaaataaaaaaccatctttgttag
gatgtgtgtgtgtgtgtgtgtgtgtgcttg
gaattcttgtccaagtcgctgtgtcccctttaaaggctcagtaccggcag
cagccatatgattggagaatggttattggaggccccccaggtaggggctg
ccgcgcccccgctctgctaaacccttttatgtttgagtgtgatcaatgag
ttggctctgcacaaccgtaagaagccttcatacgccttaattaagattga
tttcagtttcgcttccagtaaggcgtagaaatgcagagcccttagaagga
ccagttaggcgagataatgagaagccttcctgggcttccccaggcttcat
gccccgcctctggtccttgaccctctgatggagggatgtgggtttagctg
tgagcagcttcacaggtcccttcccacctgattgtagggcttagcattta
ctgctggctgctgtaagtactggagggtgtgaggacagagctgtgtagtc
ctcagaaagtctttagaaaaatgtaaacctgagcagattcacccccaggg
ttgcagcagccaaaggcagcaccctgtgtctactgtgaagggaagcatag
ggtgttccagctgccctgggactgtggggaagcatctagtaccttttccc
agtctccctttagagagacagtacacactattttaaaattgagccaaatt
atttaggaagtgaaggtgctgccaaaggaacaggggttggatctcagagt
cgaggtgcgctttcagcctccgtccccacggtcctcacgttagtgtaaaa
ttgaaagttggccactgctctgtgttctggcagcaaagagaaaagatgcc
tgctgtcctcttctagaaacttgttagaggccccttttaaatcagtccgc
cacctcagtttgtgtctgcccaacaagcccttttctgggtaacaggactt
cctcacctagctaagtgccaccttacttcaccccagcctggggcagtccc
cctctgtctcgtcagggttaccactgcctggataaagggcctatttcggc
ttacaccttccacgtggctgttcccttccgaagtgaagtaggaaatgtat
cctccacagggtcaaaaactctgtagccaggggctgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115224231_115224816
seq2: B6Ng01-087N12.b_49_634 (reverse)

seq1  CAAGCACACACACACACACACACACACATCCTAACAAAGATGGTTTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACACACACACACACACACACACATCCTAACAAAGATGGTTTTTTA  50

seq1  TTTGTTTTTTAATTTTAACAGGCTGAGTGTAGTGGCATACACCTTTAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTAATTTTAACAGGCTGAGTGTAGTGGCATACACCTTTAATC  100

seq1  CCAACACTTGGCGGGCAGAGGCAGGTGGATCTTTCTGAGTTTGAGGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTTGGCGGGCAGAGGCAGGTGGATCTTTCTGAGTTTGAGGCCTG  150

seq1  CCTGGTCTACAGAGTGAGTTCCAGGACAGGCAGAGTTACATAGTAAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACAGAGTGAGTTCCAGGACAGGCAGAGTTACATAGTAAGTGC  200

seq1  CTGTCTCAAAACTTAGGAACTAACGTAAGAAACAAAGTTCCAAAGGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCAAAACTTAGGAACTAACGTAAGAAACAAAGTTCCAAAGGTCCT  250

seq1  ATTGAGACAAGCCTTTAAAATACATGTGGTCATGGGAACTAGAGAGCGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGACAAGCCTTTAAAATACATGTGGTCATGGGAACTAGAGAGCGGG  300

seq1  CTCAGAGGTGAAGAGTTTATGTGGGAGCTAGAGAGATGGCTCAGAGGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGTGAAGAGTTTATGTGGGAGCTAGAGAGATGGCTCAGAGGTTA  350

seq1  AGAGTGTATGCTGCTCTTCCAGGAGATTCAGGTTTGGTTCTCTGTAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTATGCTGCTCTTCCAGGAGATTCAGGTTTGGTTCTCTGTAATTC  400

seq1  CAGGGGTCTGACGCCCACTTCTGGCCTCTATAGGCACATGCCCACTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTCTGACGCCCACTTCTGGCCTCTATAGGCACATGCCCACTTGTG  450

seq1  GCATACATACAAAGAAATACACATAAATAAAAATGAAAAATTAAAATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATACAAAGAAATACACATAAATAAAAATGAAAAATTAAAATACA  500

seq1  TACTTATGGTCCTTGAGAGATAGACAATCATACAGGCAAATAACCAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATGGTCCTTGAGAGATAGACAATCATACAGGCAAATAACCAAGGC  550

seq1  AACCATTTTCCATGATAAATTTTACTTCTAGAATTC  586
      ||||||||||||||||||||||||||||||||||||
seq2  AACCATTTTCCATGATAAATTTTACTTCTAGAATTC  586

seq1: chr11_115060399_115061477
seq2: B6Ng01-087N12.g_69_1156

seq1  GAATTCTTGTCCAAGTCGCTGTGTCCCCTTTAAAGGCTCAGTACCGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCCAAGTCGCTGTGTCCCCTTTAAAGGCTCAGTACCGGCAG  50

seq1  CAGCCATATGATTGGAGAATGGTTATTGGAGGCCCCCCAGGTAGGGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATATGATTGGAGAATGGTTATTGGAGGCCCCCCAGGTAGGGGCTG  100

seq1  CCGCGCCCCCGCTCTGCTAAACCCTTTTATGTTTGAGTGTGATCAATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGCCCCCGCTCTGCTAAACCCTTTTATGTTTGAGTGTGATCAATGAG  150

seq1  TTGGCTCTGCACAACCGTAAGAAGCCTTCATACGCCTTAATTAAGATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCTGCACAACCGTAAGAAGCCTTCATACGCCTTAATTAAGATTGA  200

seq1  TTTCAGTTTCGCTTCCAGTAAGGCGTAGAAATGCAGAGCCCTTAGAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTTCGCTTCCAGTAAGGCGTAGAAATGCAGAGCCCTTAGAAGGA  250

seq1  CCAGTTAGGCGAGATAATGAGAAGCCTTCCTGGGCTTCCCCAGGCTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTAGGCGAGATAATGAGAAGCCTTCCTGGGCTTCCCCAGGCTTCAT  300

seq1  GCCCCGCCTCTGGTCCTTGACCCTCTGATGGAGGGATGTGGGTTTAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGCCTCTGGTCCTTGACCCTCTGATGGAGGGATGTGGGTTTAGCTG  350

seq1  TGAGCAGCTTCACAGGTCCCTTCCCACCTGATTGTAGGGCTTAGCATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGCTTCACAGGTCCCTTCCCACCTGATTGTAGGGCTTAGCATTTA  400

seq1  CTGCTGGCTGCTGTAAGTACTGGAGGGTGTGAGGACAGAGCTGTGTAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCTGCTGTAAGTACTGGAGGGTGTGAGGACAGAGCTGTGTAGTC  450

seq1  CTCAGAAAGTCTTTAGAAAAATGTAAACCTGAGCAGATTCACCCCCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAGTCTTTAGAAAAATGTAAACCTGAGCAGATTCACCCCCAGGG  500

seq1  TTGCAGCAGCCAAAGGCAGCACCCTGTGTCTACTGTGAAGGGAAGCATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCAGCCAAAGGCAGCACCCTGTGTCTACTGTGAAGGGAAGCATAG  550

seq1  GGTGTTCCAGCTGCCCTGGGACTGTGGGGAAGCATCTAGTACCTTTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCCAGCTGCCCTGGGACTGTGGGGAAGCATCTAGTACCTTTTCCC  600

seq1  AGTCTCCCTTTAGAGAGACAGTACACACTATTTTAAAATTGAGCCAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCTTTAGAGAGACAGTACACACTATTTTAAAATTGAGCCAAATT  650

seq1  ATTTAGGAAGTGAAGGTGCTGCCAAAGGAACAGGGGTTGGATCTCAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGAAGTGAAGGTGCTGCCAAAGGAACAGGGGTTGGATCTCAGAGT  700

seq1  CGAGGTGCGCTTTCAGCCTCCGTCCCCACGGTCCTCACGTTAGTGTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTGCGCTTTCAGCCTCCGTCCCCACGGTCCTCACGTTAGTGTAAAA  750

seq1  TTGAAAGTTGGCCACTGCTCTGTGTTCTGGCAGC-AAGAG-AAAGATGCC  798
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  TTGAAAGTTGGCCACTGCTCTGTGTTCTGGCAGCAAAGAGAAAAGATGCC  800

seq1  TGCTGTCC-CTTCTAGAAGC-TGTAAGAGGCCCC-TTTGAATCAGCCCGC  845
      |||||||| ||||||||| | ||| ||||||||| ||| |||||| ||||
seq2  TGCTGTCCTCTTCTAGAAACTTGTTAGAGGCCCCTTTTAAATCAGTCCGC  850

seq1  CACCTCAGGTTTGTGTCTGCCCCAGCAGGCCCTTTCTGGGTAACAGGACT  895
      ||||||| |||||||||||||| |  || || ||||||||||||||||||
seq2  CACCTCA-GTTTGTGTCTGCCCAACAAGCCCTTTTCTGGGTAACAGGACT  899

seq1  GCCTCACCTAGCTAAGTGCCACC-TACTTCCACCCCAGCCT-GGGCAGTC  943
       |||||||||||||||||||||| ||||| ||||||||||| ||||||||
seq2  TCCTCACCTAGCTAAGTGCCACCTTACTT-CACCCCAGCCTGGGGCAGTC  948

seq1  ACCCTCTGTCCTCGTCAGGGTTACCACTGCTGTGATAAAGGGCTTA-TTC  992
       |||||||| ||||||||||||||||||||   |||||||||| || |||
seq2  CCCCTCTGT-CTCGTCAGGGTTACCACTGCCTGGATAAAGGGCCTATTTC  997

seq1  GGCTTACACC-TCCACGTTGCTGTTCACCTCTGAAG-GAAGTCAGGACAG  1040
      |||||||||| ||||||| ||||||| | || |||| ||||| |||| | 
seq2  GGCTTACACCTTCCACGTGGCTGTTCCCTTCCGAAGTGAAGT-AGGAAAT  1046

seq1  GAA--CTCACACAGGG-CAGAAAC-CTGGAGCCAGGGGCTGAC  1079
      | |  ||| ||||||| || |||| ||| ||||||||||||||
seq2  GTATCCTC-CACAGGGTCAAAAACTCTGTAGCCAGGGGCTGAC  1088