BAC Information

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BAC

Clone NameB6Ng01-088A06
Chromosome11 (Build37)
Map Location 88,519,050 - 88,694,873
singlet/doubletdoublet
Overlap geneLOC100038945, Akap1
Upstream geneRnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2
Downstream geneScpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088A06.bB6Ng01-088A06.g
ACCDH900986DH900987
length5071,061
definitionDH900986|Mus musculus domesticus DNA, BAC clone: B6Ng01-088A06, 5' end.DH900987|Mus musculus domesticus DNA, BAC clone: B6Ng01-088A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,694,361 - 88,694,873)(88,519,050 - 88,520,125)
sequence
tgcatggcacccaggggctaggtctcaaatcagcgtgggtccaagtctcc
ctttgggggtcagcctttcctataaagtagacatgccctcctgtcttctg
gggcattgctggtttggttgcaatcacacaaacttgttcagcacagctgg
ccccattctgtgcaccctatgccttggggaacacatgcagcctgggctcc
cctgtgtttacacacttgagtcaccagaggcataggctcaggtggccagg
tggctgtgctacacacagttctgcagcctgcagggtctggcgcagcctat
aggtggacgagcctgttttgtctttttcttccttctagatgatgatcatt
tttcaccggaggcagacgcagccatgagtgagatgacaggcaatacagca
ctgttggcccaggtgtgtgtgtggggggagcaggaggctggcccaagtgt
ggtgtgtatgtgtaggaggctggcctgtgtttgggtgggggggcagtagg
aggctgg
gaattcaaacaacatccctccctcccagcaatgagacctaagatagctcc
tgaagcagcaggtgcctggacctcagggcccaatgagtgtcttcctgcag
gaccactacatgaatgacaaatggaagtgcataaggtgttaagaacagag
cctggtaatcaacgcatgcctaataacactaataagcattggggacaatt
atcctttcacccaggacactcttagggctattcgttcttacgttaccagt
tgctcctgaagacactaaggaaatataaatcattgctcaagacatggtcc
accagtccttactaggaatgcgaagatgccaacttgaacaggcagtctag
aattctttatccaaggcttgcattttggaggtttctgatttcggacaggc
aacaagatgtgtgcatcgtattctacagcacccacctccctgctctgcct
gcttctactcaaagacattagaagtttttcagaaaaatccatgtaccctc
atagtcagcaggatggagacgccatatagtctgaggacaggcaggtcaga
ttctgtagcccacggagttatagaaaagctgaggccgtgacacgctagac
ctgtagccacggggtaacacggaggcaggaactgtagaaagggggactag
gcaagtaactagggtaagactaaggacaggctcagttaacacctgaagaa
gaaacaagagcctcctgagagaaaggctctctctggcagaggctgcagca
gatgcaaaggagaaccttctagaacggcatcaaccataatggacacccaa
gaggccatgcaaggcaacaagaaagctgacaaatgagctagggtcagagt
ctggtgactgagaccatactaaaggacctccccttaaactgtggctcaac
cagtactttaaaaaaagaatatgatagccgggtgtgtggcgcacgccttt
agtcccagcactcgggagcagaggcagcgatttctgagttcgagcagctg
gtctacaagtgagttcaggacgtcagggctacctagaacactgtctcgaa
aacccaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88694361_88694873
seq2: B6Ng01-088A06.b_40_552 (reverse)

seq1  CCAGCCTCCTACTGCCCCCCCACCCAAACACAGGCCAGCCTCCTACACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCCTACTGCCCCCCCACCCAAACACAGGCCAGCCTCCTACACAT  50

seq1  ACACACCACACTTGGGCCAGCCTCCTGCTCCCCCCACACACACACCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCACACTTGGGCCAGCCTCCTGCTCCCCCCACACACACACCTGGG  100

seq1  CCAACAGTGCTGTATTGCCTGTCATCTCACTCATGGCTGCGTCTGCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGTGCTGTATTGCCTGTCATCTCACTCATGGCTGCGTCTGCCTCC  150

seq1  GGTGAAAAATGATCATCATCTAGAAGGAAGAAAAAGACAAAACAGGCTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAAATGATCATCATCTAGAAGGAAGAAAAAGACAAAACAGGCTCG  200

seq1  TCCACCTATAGGCTGCGCCAGACCCTGCAGGCTGCAGAACTGTGTGTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTATAGGCTGCGCCAGACCCTGCAGGCTGCAGAACTGTGTGTAGC  250

seq1  ACAGCCACCTGGCCACCTGAGCCTATGCCTCTGGTGACTCAAGTGTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCACCTGGCCACCTGAGCCTATGCCTCTGGTGACTCAAGTGTGTAA  300

seq1  ACACAGGGGAGCCCAGGCTGCATGTGTTCCCCAAGGCATAGGGTGCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGGAGCCCAGGCTGCATGTGTTCCCCAAGGCATAGGGTGCACAG  350

seq1  AATGGGGCCAGCTGTGCTGAACAAGTTTGTGTGATTGCAACCAAACCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGCCAGCTGTGCTGAACAAGTTTGTGTGATTGCAACCAAACCAGC  400

seq1  AATGCCCCAGAAGACAGGAGGGCATGTCTACTTTATAGGAAAGGCTGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCCAGAAGACAGGAGGGCATGTCTACTTTATAGGAAAGGCTGACC  450

seq1  CCCAAAGGGAGACTTGGACCCACGCTGATTTGAGACCTAGCCCCTGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGGGAGACTTGGACCCACGCTGATTTGAGACCTAGCCCCTGGGTG  500

seq1  CCATGCAGAATTC  513
      |||||||||||||
seq2  CCATGCAGAATTC  513

seq1: chr11_88519050_88520125
seq2: B6Ng01-088A06.g_67_1127

seq1  GAATTCAAACAACATCCCTCCCTCCCAGCAATGAGACCTAAGATAGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAACATCCCTCCCTCCCAGCAATGAGACCTAAGATAGCTCC  50

seq1  TGAAGCAGCAGGTGCCTGGACCTCAGGGCCCAATGAGTGTCTTCCTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGCAGGTGCCTGGACCTCAGGGCCCAATGAGTGTCTTCCTGCAG  100

seq1  GACCACTACATGAATGACAAATGGAAGTGCATAAGGTGTTAAGAACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTACATGAATGACAAATGGAAGTGCATAAGGTGTTAAGAACAGAG  150

seq1  CCTGGTAATCAACGCATGCCTAATAACACTAATAAGCATTGGGGACAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAATCAACGCATGCCTAATAACACTAATAAGCATTGGGGACAATT  200

seq1  ATCCTTTCACCCAGGACACTCTTAGGGCTATTCGTTCTTACGTTACCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCACCCAGGACACTCTTAGGGCTATTCGTTCTTACGTTACCAGT  250

seq1  TGCTCCTGAAGACACTAAGGAAATATAAATCATTGCTCAAGACATGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGAAGACACTAAGGAAATATAAATCATTGCTCAAGACATGGTCC  300

seq1  ACCAGTCCTTACTAGGAATGCGAAGATGCCAACTTGAACAGGCAGTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCCTTACTAGGAATGCGAAGATGCCAACTTGAACAGGCAGTCTAG  350

seq1  AATTCTTTATCCAAGGCTTGCATTTTGGAGGTTTCTGATTTCGGACAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTATCCAAGGCTTGCATTTTGGAGGTTTCTGATTTCGGACAGGC  400

seq1  AACAAGATGTGTGCATCGTATTCTACAGCACCCACCTCCCTGCTCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATGTGTGCATCGTATTCTACAGCACCCACCTCCCTGCTCTGCCT  450

seq1  GCTTCTACTCAAAGACATTAGAAGTTTTTCAGAAAAATCCATGTACCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTACTCAAAGACATTAGAAGTTTTTCAGAAAAATCCATGTACCCTC  500

seq1  ATAGTCAGCAGGATGGAGACGCCATATAGTCTGAGGACAGGCAGGTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAGCAGGATGGAGACGCCATATAGTCTGAGGACAGGCAGGTCAGA  550

seq1  TTCTGTAGCCCACGGAGTTATAGAAAAGCTGAGGCCGTGACACGCTAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGCCCACGGAGTTATAGAAAAGCTGAGGCCGTGACACGCTAGAC  600

seq1  CTGTAGCCACGGGGTAACACGGAGGCAGGAACTGTAGAAAGGGGGACTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCCACGGGGTAACACGGAGGCAGGAACTGTAGAAAGGGGGACTAG  650

seq1  GCAAGTAACTAGGGTAAGACTAAGGACAGGCTCAGTTAACACCTGAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAACTAGGGTAAGACTAAGGACAGGCTCAGTTAACACCTGAAGAA  700

seq1  GAAACAAGAGCCTCCTGAGAGAAAGGCTCTCTCTGGCAGAGGCTGCAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGAGCCTCCTGAGAGAAAGGCTCTCTCTGGCAGAGGCTGCAGCA  750

seq1  GATGCAAAGGAGAACCTTCTAGAACGGCATCAACCATAATGGACACCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAAGGAGAACCTTCTAGAACGGCATCAACCATAATGGACACCCAA  800

seq1  GAGGCCATGCAAGGCAACAAGAAGGCTGACAAATGAGGCTAGGGTCAGAG  850
      ||||||||||||||||||||||| |||||||||||| |||||||||||||
seq2  GAGGCCATGCAAGGCAACAAGAAAGCTGACAAATGA-GCTAGGGTCAGAG  849

seq1  TCTGGTGACTGAGACCATACTAAAGGACCTCCCCTTAAAACTGTGGCTCA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTGGTGACTGAGACCATACTAAAGGACCTCCCCTT-AAACTGTGGCTCA  898

seq1  ACCAGTACTTTAAAAAAAGAATATGATAGCCGGGTGTGGTGGCGCACGCC  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACCAGTACTTTAAAAAAAGAATATGATAGCCGGGTGT-GTGGCGCACGCC  947

seq1  TTTAGTCCCAGCACTCGGGAAGCAGAGGCAGGCGGATTTCTGAGTTCGAG  1000
      ||||||||||||||||||| |||||||||||   ||||||||||||||||
seq2  TTTAGTCCCAGCACTCGGG-AGCAGAGGCAG--CGATTTCTGAGTTCGAG  994

seq1  GCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGTCAGGGCTACACAGAG  1050
        ||| ||||||||| ||||||||| |||||| |||||||||||  ||  
seq2  --CAG-CTGGTCTAC-AAGTGAGTT-CAGGAC-GTCAGGGCTACCTAG--  1036

seq1  AAACACTGTCTCGAAAAACCAAAAAA  1076
       |||||||||||||||| ||||||||
seq2  -AACACTGTCTCGAAAACCCAAAAAA  1061