BAC Information

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BAC

Clone NameB6Ng01-088C09
Chromosome11 (Build37)
Map Location 88,069,830 - 88,257,796
singlet/doubletdoublet
Overlap gene1700106J16Rik, LOC668793, Msi2
Upstream genePpm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23
Downstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088C09.bB6Ng01-088C09.g
ACCDH901083DH901084
length4441,129
definitionDH901083|Mus musculus domesticus DNA, BAC clone: B6Ng01-088C09, 5' end.DH901084|Mus musculus domesticus DNA, BAC clone: B6Ng01-088C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,069,830 - 88,070,279)(88,256,660 - 88,257,796)
sequence
tccattctggaactgacaccaccttctggaaagaaatatacagaaagaga
aagtatactagtgtcaagaagagaacgtccctgctttcccaaagatatac
aagtggccatctcagcggctctagattctagatcatagcacagtggatat
gtttgcttataaagatattttgatcttttagtttatgactcaaatggatt
gccagagtggggatgaggagaccaaaaacatatctaaggctcttagaaca
tcttttcaaattgccttccaaatgggtcagattaattttcatcttattcg
ggatcggtactggctggttttgtgtgtcaacttgacacaagctggagtta
tcacagagaaaggagcctcccctgaggaaatgccttcatgagatccagct
gtagggcattttctcaattagtgatgggggggggggcgggaagg
gaattcagcttagctcagctcatgcagctcagggccgaaatgagatgaga
actcagcagaaccgggcttgctggtgaggctgccaccgatccggtcgtgg
ccagcagctgttttatgaaacaatgaaagaaaaagtgttcggcggcacac
caagggcctcgtagagccaattaggagtgtggctttctctgcctgtctgt
gcggctgctgaggaggcgacagtgtttaatagaagaggcatgctcagacc
catccttccaggatgcgcagaaaaggacccgaggaccattctgatcgata
cccaggagggaggatgtctctctgaggacactcgcatggcacagggaggt
gttgaggacaaatgctcattcttgtggatgcttggaagggtctgttccat
acaatccattctgtcccgcagtcaagccgctgtgacattttcgttcccgt
ttaaaacattgctatcaaccagttggaatataagcccagagtatcgcagg
gagtaatctaattagtatgaagtcaattcagtcgctccttttgtatctcg
tgattaaataagtggggaaaatggcttgaaaattaggtgctagaacgacc
caattacatttctgtagctttttgtattcaatttcataaacaattttgct
cttcgatggttaatcagtgaatgcctttttccagtttgaaaagcactttt
gaaattataatgcaattaaattgtgtgtgggatgttctggcatagcgagt
gtgaaagccgggggcttggcaggccgccatgttgtaccttgactgtaatg
agtccccaggctggcagcttgcgagtgtcattcataatattgtccatgct
gggttactgtaaagtgcagctgccttaacaggcagttaacagcgaccgcc
agttcgatctttagagcaaggcttgtttgcctcatgcacagattgtgtcc
agaggtgacagatgggagggcttctttctgaggctggctgagctctggga
ggtgggtggcttctaagggatgaagctgttccctaaaggggattgcttgc
tcatcccaaaaaaggaaaacgtgtttgtccttacgcgctgtctgttcacg
ggaacaagttgggaagagggtagggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88069830_88070279
seq2: B6Ng01-088C09.b_45_494

seq1  GAATTCTCCATTCTGGAACTGACACCACCTTCTGGAAAGAAATATACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATTCTGGAACTGACACCACCTTCTGGAAAGAAATATACAGA  50

seq1  AAGAGAAAGTATACTAGTGTCAAGAAGAGAACGTCCCTGCTTTCCCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGTATACTAGTGTCAAGAAGAGAACGTCCCTGCTTTCCCAAAG  100

seq1  ATATACAAGTGGCCATCTCAGCGGCTCTAGATTCTAGATCATAGCACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAAGTGGCCATCTCAGCGGCTCTAGATTCTAGATCATAGCACAGT  150

seq1  GGATATGTTTGCTTATAAAGATATTTTGATCTTTTAGTTTATGACTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGTTTGCTTATAAAGATATTTTGATCTTTTAGTTTATGACTCAAA  200

seq1  TGGATTGCCAGAGTGGGGATGAGGAGACCAAAAACATATCTAAGGCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGCCAGAGTGGGGATGAGGAGACCAAAAACATATCTAAGGCTCTT  250

seq1  AGAACATCTTTTCAAATTGCCTTCCAAATGGGTCAGATTAATTTTCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATCTTTTCAAATTGCCTTCCAAATGGGTCAGATTAATTTTCATCT  300

seq1  TATTCGGGATCGGTACTGGCTGGTTTTGTGTGTCAACTTGACACAAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGGGATCGGTACTGGCTGGTTTTGTGTGTCAACTTGACACAAGCTG  350

seq1  GAGTTATCACAGAGAAAGGAGCCTCCCCTGAGGAAATGCCTTCATGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATCACAGAGAAAGGAGCCTCCCCTGAGGAAATGCCTTCATGAGAT  400

seq1  CCAGCTGTAGGGCATTTTCTCAATTAGTGATGGGGGGGGGGGCGGGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTAGGGCATTTTCTCAATTAGTGATGGGGGGGGGGGCGGGAAGG  450

seq1: chr11_88256660_88257796
seq2: B6Ng01-088C09.g_70_1198 (reverse)

seq1  -------TTCCCCCTTCCCATGACTTGTTCCCACTAGACAGACAAGCTGC  43
             | ||| |||||||  ||||||||||  |  |||||| ||| ||
seq2  TTCCCCCTACCCTCTTCCCA--ACTTGTTCCC-GTGAACAGAC-AGC-GC  45

seq1  TGAAGGACAAACGCAGTCTGCCCTTCTTTGGGGATGTGCAAGCAGATCAC  93
        |||||||||| | || | ||  | ||| |||||| ||||||| ||| |
seq2  GTAAGGACAAACAC-GTTTTCC--TTTTTTGGGATGAGCAAGCA-ATCCC  91

seq1  CTCTCAGGCAACAGCTTCATCCATTAGGAAGACACCCAACCTCCCAGTGG  143
      || | ||| ||||||||||||| ||| |||| ||||| |||||||||  |
seq2  CT-TTAGGGAACAGCTTCATCCCTTA-GAAGCCACCC-ACCTCCCAG-AG  137

seq1  CTCAGCCAGCCTCAG-AAGGAGCCCTGCCATTCTGTCACCTCTGGGCACA  192
      ||||||||||||||| ||| |||||| ||| |||||||||||||| ||||
seq2  CTCAGCCAGCCTCAGAAAGAAGCCCTCCCA-TCTGTCACCTCTGGACACA  186

seq1  ATCCTGTTGCATGAGGCAAACAAGCCTTGCTCTAGAGATCGGACTGGCGG  242
      || ||| ||||||||||||||||||||||||||| |||||| ||||||||
seq2  AT-CTG-TGCATGAGGCAAACAAGCCTTGCTCTAAAGATCGAACTGGCGG  234

seq1  TCGCTGGTTAACTGCCTGTTAAGGCAGCTGCACTTTACAGTAACCCAGCA  292
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCT-GTTAACTGCCTGTTAAGGCAGCTGCACTTTACAGTAACCCAGCA  283

seq1  TGGACAATATTATGAATGACACTCGCAAGCTGCCAGCCTGGGGACTCATT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAATATTATGAATGACACTCGCAAGCTGCCAGCCTGGGGACTCATT  333

seq1  ACAGTCAAGGTACAACATGGCGGCCTGCCAAGCCCCCGGCTTTCACACTC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAAGGTACAACATGGCGGCCTGCCAAGCCCCCGGCTTTCACACTC  383

seq1  GCTATGCCAGAACAT-CCACACACAATTTAATTGCATTATAATTTCAAAA  441
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTATGCCAGAACATCCCACACACAATTTAATTGCATTATAATTTCAAAA  433

seq1  GTGCTTTTCAAACTGGAAAAAGGCATTCACTGATTAACCATCGAAGAGCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTTCAAACTGGAAAAAGGCATTCACTGATTAACCATCGAAGAGCA  483

seq1  AAATTGTTTATGAAATTGAATACAAAAAGCTACAGAAATGTAATTGGGTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTTATGAAATTGAATACAAAAAGCTACAGAAATGTAATTGGGTC  533

seq1  GTTCTAGCACCTAATTTTCAAGCCATTTTCCCCACTTATTTAATCACGAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGCACCTAATTTTCAAGCCATTTTCCCCACTTATTTAATCACGAG  583

seq1  ATACAAAAGGAGCGACTGAATTGACTTCATACTAATTAGATTACTCCCTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAAGGAGCGACTGAATTGACTTCATACTAATTAGATTACTCCCTG  633

seq1  CGATACTCTGGGCTTATATTCCAACTGGTTGATAGCAATGTTTTAAACGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATACTCTGGGCTTATATTCCAACTGGTTGATAGCAATGTTTTAAACGG  683

seq1  GAACGAAAATGTCACAGCGGCTTGACTGCGGGACAGAATGGATTGTATGG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGAAAATGTCACAGCGGCTTGACTGCGGGACAGAATGGATTGTATGG  733

seq1  AACAGACCCTTCCAAGCATCCACAAGAATGAGCATTTGTCCTCAACACCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACCCTTCCAAGCATCCACAAGAATGAGCATTTGTCCTCAACACCT  783

seq1  CCCTGTGCCATGCGAGTGTCCTCAGAGAGACATCCTCCCTCCTGGGTATC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCCATGCGAGTGTCCTCAGAGAGACATCCTCCCTCCTGGGTATC  833

seq1  GATCAGAATGGTCCTCGGGTCCTTTTCTGCGCATCCTGGAAGGATGGGTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAATGGTCCTCGGGTCCTTTTCTGCGCATCCTGGAAGGATGGGTC  883

seq1  TGAGCATGCCTCTTCTATTAAACACTGTCGCCTCCTCAGCAGCCGCACAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGCCTCTTCTATTAAACACTGTCGCCTCCTCAGCAGCCGCACAG  933

seq1  ACAGGCAGAGAAAGCCACACTCCTAATTGGCTCTACGAGGCCCTTGGTGT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGAGAAAGCCACACTCCTAATTGGCTCTACGAGGCCCTTGGTGT  983

seq1  GCCGCCGAACACTTTTTCTTTCATTGTTTCATAAAACAGCTGCTGGCCAC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCGAACACTTTTTCTTTCATTGTTTCATAAAACAGCTGCTGGCCAC  1033

seq1  GACCGGATCGGTGGCAGCCTCACCAGCAAGCCCGGTTCTGCTGAGTTCTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGGATCGGTGGCAGCCTCACCAGCAAGCCCGGTTCTGCTGAGTTCTC  1083

seq1  ATCTCATTTCGGCCCTGAGCTGCATGAGCTGAGCTGAGCTGAATTC  1137
      ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATCTCATTTCGGCCCTGAGCTGCATGAGCTGAGCTAAGCTGAATTC  1129