BAC Information

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BAC

Clone NameB6Ng01-088F09
Chromosome11 (Build37)
Map Location 49,844,958 - 49,954,103
singlet/doubletdoublet
Overlap geneRnf130, LOC380696, Tbc1d9b
Upstream gene9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c
Downstream gene3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088F09.bB6Ng01-088F09.g
ACCDH901216DH901217
length1,0161,156
definitionDH901216|Mus musculus domesticus DNA, BAC clone: B6Ng01-088F09, 5' end.DH901217|Mus musculus domesticus DNA, BAC clone: B6Ng01-088F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,844,958 - 49,845,983)(49,952,932 - 49,954,103)
sequence
gaattcaaggcctacctggtctacattgcaagttccagaccagccagaga
ttcagaaagagaggtcggccttgtcttgtccccattaaaggggatgactt
gaagtcagtcatgagaaagaacttccacttatggctgtagtaggttcact
ggtactggttccctcccaatcttaactaatcagaaaaccagacagcctat
gagtagcagctttagataaggtcagttggcagcatgggatggggatccct
gagagaagagccccaccattgcctcctactgtctgggaatttataggctg
cagtgcagagagacaggcagctcagatgcaagcccatagtgtcatgagct
gatgacagaactcaggtgaaacagcactggagcggaggagggggctgcag
agagccagtgggactgctgcaggggactgtcctccagtctgagcactgac
aatgctgggagaagaactgtcaaaaggtagcagttaggatggttccagga
gtccacgggaagctgggaatctgtgaggttctctttcatcagaataggaa
acctggtgagcaggagcatgtgtgaagtggattactcctaaacagtgctg
ctctgggaccctctccccacagactcttagaagcaaacctttaaaggatc
tgactgagaccgtgtaatctgttctaaaatgtctaggtgatatttaaagg
aatgccttaatatgtatctcccctaaccataaaatctgaaactgaccaag
tccagaatcaccaggcctatgaacaagcaggaaaatgacctaaaaccaga
tgacaggattgcatatgggaatgtttggccagtctttagaaatatactgt
gtgtttggaaatggaaaaggaacatgagcatgaggagagaaatggacgtt
aaaacattattgatcaaattctttatacagtactaaccttgaaaatgcac
aagtacactgatgtgagtggggggtaggagagggtcctgttctcagtgtc
ccagttgtctggagca
gaattcattgtatcccacagatatggagcaacaactgtgtgtggccgcta
gcacttcacaaagggagctgggttggttgtcggtgggacatgggccttac
gtgtatcttgcccttgacgaaggtagtgatgtcctcctcgttgtcgaaga
tggacagtgtctgaagcaagttgttttccagccattcccagtgtttggtg
atctcttttcgggaagaacctagttcagtgagagtggatgaaatcagagc
tcagactcaagcagagggctgggtccccagtgctctctctctattcaagt
gaccccctcctcccaaggcaaggatgagcctctcctgtttacactttcta
ttacagtgagagtcctccctcccctaccaagagtactcctgttcttctag
agacaatctacaaggcggctgtaaacaggtaaatttatcagatttctttg
tcccgttgttgacagagtccctgcagggcaggcaaacagctactgtcttc
agctggcctcccccactccccagcatctgtctgagcagtgcacggagagt
ggaaacggaagcacagtgctcttcccacaggccgggtggggctgtctgct
tccatcaagggtctaaatgagcagccctgggaggtgaaataagaaaccta
gactggaaacctttcggaatggatgcctaaaaaggatgggaggagggagc
aacctgtggtcttaactgtgctggtgtggagcagttcatgggtcctggca
ggaaaagcagccacgtgtcacggccaggcccatatactatgacctatgaa
ccaaaggtcagagcgtagggtgttctgggaaaattcttcaccactgaggg
agacacccttctctaattggaacactcttgtaccagctgtgctggtggcc
ttgactccttcctgactaggcctagtggtcgccaccacctcctcccaccc
atgctctgctcgtggccgtgctgtagcctggctgccctcactagggatgc
tttgtttgcttctactcagcagtcatcagacaagcaacttcacagcacgg
agcctcttcctgggaagacagccacaagaagaacggagtcaagctgagca
ctaaatactcagtgagtcagcaagctcaatctctcggagcccttcagcac
agttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_49844958_49845983
seq2: B6Ng01-088F09.b_51_1066

seq1  GAATTCAAGGCCTACCTGGTCTACATTGCAAGTTCCAGACCAGCCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCTACCTGGTCTACATTGCAAGTTCCAGACCAGCCAGAGA  50

seq1  TTCAGAAAGAGAGGTCGGCCTTGTCTTGTCCCCATTAAAGGGGATGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAGAGAGGTCGGCCTTGTCTTGTCCCCATTAAAGGGGATGACTT  100

seq1  GAAGTCAGTCATGAGAAAGAACTTCCACTTATGGCTGTAGTAGGTTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGTCATGAGAAAGAACTTCCACTTATGGCTGTAGTAGGTTCACT  150

seq1  GGTACTGGTTCCCTCCCAATCTTAACTAATCAGAAAACCAGACAGCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGGTTCCCTCCCAATCTTAACTAATCAGAAAACCAGACAGCCTAT  200

seq1  GAGTAGCAGCTTTAGATAAGGTCAGTTGGCAGCATGGGATGGGGATCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCAGCTTTAGATAAGGTCAGTTGGCAGCATGGGATGGGGATCCCT  250

seq1  GAGAGAAGAGCCCCACCATTGCCTCCTACTGTCTGGGAATTTATAGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGAGCCCCACCATTGCCTCCTACTGTCTGGGAATTTATAGGCTG  300

seq1  CAGTGCAGAGAGACAGGCAGCTCAGATGCAAGCCCATAGTGTCATGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGAGAGACAGGCAGCTCAGATGCAAGCCCATAGTGTCATGAGCT  350

seq1  GATGACAGAACTCAGGTGAAACAGCACTGGAGCGGAGGAGGGGGCTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAGAACTCAGGTGAAACAGCACTGGAGCGGAGGAGGGGGCTGCAG  400

seq1  AGAGCCAGTGGGACTGCTGCAGGGGACTGTCCTCCAGTCTGAGCACTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAGTGGGACTGCTGCAGGGGACTGTCCTCCAGTCTGAGCACTGAC  450

seq1  AATGCTGGGAGAAGAACTGTCAAAAGGTAGCAGTTAGGATGGTTCCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGGGAGAAGAACTGTCAAAAGGTAGCAGTTAGGATGGTTCCAGGA  500

seq1  GTCCACGGGAAGCTGGGAATCTGTGAGGTTCTCTTTCATCAGAATAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACGGGAAGCTGGGAATCTGTGAGGTTCTCTTTCATCAGAATAGGAA  550

seq1  ACCTGGTGAGCAGGAGCATGTGTGAAGTGGATTACTCCTAAACAGTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTGAGCAGGAGCATGTGTGAAGTGGATTACTCCTAAACAGTGCTG  600

seq1  CTCTGGGACCCTCTCCCCACAGACTCTTAGAAGCAAACCTTTAAAGGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGACCCTCTCCCCACAGACTCTTAGAAGCAAACCTTTAAAGGATC  650

seq1  TGACTGAGACCGTGTAATCTGTTCTAAAATGTCTAGGTGATATTTAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAGACCGTGTAATCTGTTCTAAAATGTCTAGGTGATATTTAAAGG  700

seq1  AATGCCTTAATATGTATCTCCCCTAACCATAAAATCTGAAACTGACCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTAATATGTATCTCCCCTAACCATAAAATCTGAAACTGACCAAG  750

seq1  TCCAGAATCACCAGGCCTATGAACAAGCAGGAAAATGACCTAAAACCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAATCACCAGGCCTATGAACAAGCAGGAAAATGACCTAAAACCAGA  800

seq1  TGACAGGATTGCATATGGGAATGTTTGGCCAGTCTTTAGAAATATACTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGATTGCATATGGGAATGTTTGGCCAGTCTTTAGAAATATACTGT  850

seq1  GTGTTTGGAAATGGAAAAGGAAACATGAGCATGAGGAGAGAAAATGGACG  900
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  GTGTTTGGAAATGGAAAAGG-AACATGAGCATGAGGAGAG-AAATGGACG  898

seq1  TTAAAAACATTATTGATCAAAATTCTTTATACAGTACTAACCTTGAAAAT  950
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TT-AAAACATTATTGATC-AAATTCTTTATACAGTACTAACCTTGAAAAT  946

seq1  GCACAAGTTACACTGATTGGTGAGT-GGGGGTAGGAGAGGGTCCTGTTTC  999
      ||||||| |||||||||  |||||| ||||||||||||||||||||||  
seq2  GCACAAG-TACACTGAT--GTGAGTGGGGGGTAGGAGAGGGTCCTGTT--  991

seq1  TTCAGTGTTCTCAGTTTGTCTGGAGCA  1026
       |||||| || ||| ||||||||||||
seq2  CTCAGTG-TCCCAG-TTGTCTGGAGCA  1016

seq1: chr11_49952932_49954103
seq2: B6Ng01-088F09.g_69_1224 (reverse)

seq1  GGAACTGGGTGGCTGAAGGGGCTTACAGAGAGATTGAGCCTGCGTGACTC  50
      |||||||    |||||| |||||  | |||||||||||| ||| ||||||
seq2  GGAACTG---TGCTGAA-GGGCT--CCGAGAGATTGAGCTTGC-TGACTC  43

seq1  ACTGAGGTATCTAGTGCTTCAGGCTTGACTCCTGTCTTCTTGTGGCTGTC  100
      ||||| |||| |||||| ||| ||||||||||  ||||||||||||||| 
seq2  ACTGA-GTATTTAGTGC-TCA-GCTTGACTCCGTTCTTCTTGTGGCTGT-  89

seq1  CTTCCCCAGGAGAGGCTCCGTGCTGTGAAGTTGCTTGTCTGATGAACTGC  150
      ||||||  | |||||||||||||||||||||||||||||||||| |||||
seq2  CTTCCCAGGAAGAGGCTCCGTGCTGTGAAGTTGCTTGTCTGATG-ACTGC  138

seq1  TTGAGTAAGAAGCAAACAAAGCATCCCTAGTGAGGGCAAGCCAGGCTACA  200
       ||||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  -TGAGT-AGAAGCAAACAAAGCATCCCTAGTGAGGGC-AGCCAGGCTACA  185

seq1  GCACGGCCACGAGCAGAGCCATGGGTGGGAGGAGGTGGTGGCGACCACTA  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCACGGCCACGAGCAGAG-CATGGGTGGGAGGAGGTGGTGGCGACCACTA  234

seq1  GGCCTAGTCAGGAAGGAGTCAAGGCCACCAGCACAGCTGGTACAAGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGTCAGGAAGGAGTCAAGGCCACCAGCACAGCTGGTACAAGAGTG  284

seq1  TTCCAATTAGAGAAGGGTGTCTCCCTCAGTGGTGAAGAATTTTCCCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTAGAGAAGGGTGTCTCCCTCAGTGGTGAAGAATTTTCCCAGAA  334

seq1  CACCCTACGCTCTGACCTTTGGTTCATAGGTCATAGTATATGGGCCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTACGCTCTGACCTTTGGTTCATAGGTCATAGTATATGGGCCTGGC  384

seq1  CGTGACACGTGGCTGCTTTTCCTGCCAGGACCCATGAACTGCTCCACACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACACGTGGCTGCTTTTCCTGCCAGGACCCATGAACTGCTCCACACC  434

seq1  AGCACAGTTAAGACCACAGGTTGCTCCCTCCTCCCATCCTTTTTAGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGTTAAGACCACAGGTTGCTCCCTCCTCCCATCCTTTTTAGGCAT  484

seq1  CCATTCCGAAAGGTTTCCAGTCTAGGTTTCTTATTTCACCTCCCAGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCGAAAGGTTTCCAGTCTAGGTTTCTTATTTCACCTCCCAGGGCT  534

seq1  GCTCATTTAGACCCTTGATGGAAGCAGACAGCCCCACCCGGCCTGTGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTAGACCCTTGATGGAAGCAGACAGCCCCACCCGGCCTGTGGGA  584

seq1  AGAGCACTGTGCTTCCGTTTCCACTCTCCGTGCACTGCTCAGACAGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTGTGCTTCCGTTTCCACTCTCCGTGCACTGCTCAGACAGATGC  634

seq1  TGGGGAGTGGGGGAGGCCAGCTGAAGACAGTAGCTGTTTGCCTGCCCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGTGGGGGAGGCCAGCTGAAGACAGTAGCTGTTTGCCTGCCCTGC  684

seq1  AGGGACTCTGTCAACAACGGGACAAAGAAATCTGATAAATTTACCTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTCTGTCAACAACGGGACAAAGAAATCTGATAAATTTACCTGTTT  734

seq1  ACAGCCGCCTTGTAGATTGTCTCTAGAAGAACAGGAGTACTCTTGGTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCGCCTTGTAGATTGTCTCTAGAAGAACAGGAGTACTCTTGGTAGG  784

seq1  GGAGGGAGGACTCTCACTGTAATAGAAAGTGTAAACAGGAGAGGCTCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGGACTCTCACTGTAATAGAAAGTGTAAACAGGAGAGGCTCATC  834

seq1  CTTGCCTTGGGAGGAGGGGGTCACTTGAATAGAGAGAGAGCACTGGGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTGGGAGGAGGGGGTCACTTGAATAGAGAGAGAGCACTGGGGAC  884

seq1  CCAGCCCTCTGCTTGAGTCTGAGCTCTGATTTCATCCACTCTCACTGAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTCTGCTTGAGTCTGAGCTCTGATTTCATCCACTCTCACTGAAC  934

seq1  TAGGTTCTTCCCGAAAAGAGATCACCAAACACTGGGAATGGCTGGAAAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCTTCCCGAAAAGAGATCACCAAACACTGGGAATGGCTGGAAAAC  984

seq1  AACTTGCTTCAGACACTGTCCATCTTCGACAACGAGGAGGACATCACTAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCTTCAGACACTGTCCATCTTCGACAACGAGGAGGACATCACTAC  1034

seq1  CTTCGTCAAGGGCAAGATACACGTAAGGCCCATGTCCCACCGACAACCAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTCAAGGGCAAGATACACGTAAGGCCCATGTCCCACCGACAACCAA  1084

seq1  CCCAGCTCCCTTTGTGAAGTGCTAGCGGCCACACACAGTTGTTGCTCCAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTCCCTTTGTGAAGTGCTAGCGGCCACACACAGTTGTTGCTCCAT  1134

seq1  ATCTGTGGGATACAATGAATTC  1172
      ||||||||||||||||||||||
seq2  ATCTGTGGGATACAATGAATTC  1156