BAC Information

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BAC

Clone NameB6Ng01-088I02
Chromosome11 (Build37)
Map Location 118,956,877 - 119,093,032
singlet/doubletdoublet
Overlap geneTbc1d16, Ccdc40
Upstream geneDnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4
Downstream geneGaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088I02.bB6Ng01-088I02.g
ACCDH901338DH901339
length1,1731,081
definitionDH901338|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I02, 5' end.DH901339|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,091,858 - 119,093,032)(118,956,877 - 118,957,970)
sequence
gaattccacatctgtgtctggagcggtctctccaatgaattccacttctg
tttctgggggagtctctccattggaccccacttctccttcagagatggct
tccccatccgtgctgactttctcagcatccatcatttccccttcagatcc
gcccccgccttcagttgtaatgtcctcttcaggacttctggtggggtctc
tgccctcatcaatttcttggccattgtcttccagctgtggtgatacctgt
tacagggcggcaagaaatcccagggaagaaaatataatcttgagagatct
tagggttacaagaacatctatatacatctccccacccccaagagatgatg
ttctgtgtctgatgtaactactgcctctttctagaggcacgtgttacaag
catgaactctggaaaatacaaggcagtgtgagggttggcgtgttatcacc
gaaagctaacactttggaatgagcttgacccagcctatcttaatctgaga
agggagtctcaagggaggaaattgactagagaaggctggcctgtctgtag
gggatggggggttgtcttgactattcattggcctggcccactgcaggcaa
caccatttcctacataagcagtcatgggctgtataaaaaagctagctgag
cagaagctgcgaatgagccggtatgcaatgttcctgtcatactccctttg
gctgtgagtgagtgtgggccccacaagtgagttctctagtttagaggtaa
tacatgctgactgggcaagcaggcttgcctttcggctcctgactttgact
tccctcagggatgaactatgacctgaaagtgaaagccatataaatctttt
cctcttcttagatgcttttggtcagacggtttttacaatgccagtagaac
accagtgaagaagggaacgagtttctccgtgcctgacttgagatggtcca
gagcgtacgatgatggtcccatggttccctggccctgtctatttgtctcc
tagcacataggggtctgatggacgttacctcagggcttcagattactgct
gctcctgtcctcttcgcagagactgtgggccttcctgctgtgacttgctt
ttagaacaggaacactgggttcacagcctacatgcaacttggtaatccac
ctgatcactggtaaggcctctgc
gaattctaaagacagccgcagctgttaagtacacagagacaggctgagga
ttctctcacacactgggctatagtggctttcttcttcttgttttcctacc
aaaggtacgttcccgtttgtgcctgccttctgccttttttccccaaatag
atcttgacagtcagacacagattctatgctgtgtggagttgagctgggcc
cagttttttttttttcttcactagctcttcaggctgacccaggggttgga
gttatgcctgtgttctgactctcaggggttgaagggtcggtgaggaagca
cctgggtgtgtcctgtagcatgcatcccgtgctccaggcagccctgctcc
tcagataaaaaagggcggccatttgtggacacagcccacagagcccgctc
caatgctctgagcgacattgattagtcactgcagtctcctcattagaggc
ctgatcagtagcaatatacgtcagtgacttctccctcagtgagctcctct
ggccctcagatgccacctcaacggcagcctggcactaaagctgagcatct
aagtctggcaagcacagtgagaggctttattgagaggtctccgggcctgg
ggatggtggggacacaaatggcccccacattatgctcctgcttggccctg
tcctcttccccctcctcaggagagtgaggaggctctggaggtgcctttaa
ggcacagtatcaccacgatgttggtcgcagcgcgcttgaggaaccgggct
tcaggttgcctaggtgaatttgtcaatagaatatcgaacaggcctgggct
cagccgccacaatggtttgtttcaagcagccggcctgtagtgctcctcac
actgtggggaggaccacagggtcctagctgggctaagggatcacaacaaa
tggcaaaaataaaaccatgccccagactccagagcccactggagacctcc
ctctacagctccccagccccaccctcagtcccacccctgtatatgactca
gtgccacagatgatcatcacggcccctgggaccactcagatgctcaatct
atccatccaccttcttggatcgacatccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_119091858_119093032
seq2: B6Ng01-088I02.b_44_1216 (reverse)

seq1  GCAGAGGCCTTACCAGTGAACAGCTGG--TATGCAGTGTGCATGATAGGG  48
      ||||||||||||||||||| ||| |||  ||   ||| |||||| || ||
seq2  GCAGAGGCCTTACCAGTGATCAGGTGGATTACCAAGT-TGCATG-TA-GG  47

seq1  CTGTGAA-CCAGTGTTCCCTGTCTCTAAAAGCAGGTCACAGCAGGAAGGC  97
      ||||||| |||||||| ||||| |||||||||| ||||||||||||||||
seq2  CTGTGAACCCAGTGTT-CCTGT-TCTAAAAGCAAGTCACAGCAGGAAGGC  95

seq1  CAACAGTCTTCTGCCGAAGAGGACTCGGAGCAGCAGTATACTGAAGGCCC  147
      | |||||| |||| ||||||||||  ||||||||||||  ||||| ||||
seq2  CCACAGTC-TCTG-CGAAGAGGAC-AGGAGCAGCAGTAATCTGAA-GCCC  141

seq1  TGAGGTAACGTCCATTCAGACCCCTATGTGCTAGGAGACAAATAGACAGG  197
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  TGAGGTAACGTCCA-TCAGACCCCTATGTGCTAGGAGACAAATAGACA-G  189

seq1  GGCCAGGG-ACCATGGGACCATCATCGTACGCTCTGGGACCATCTCAGTT  246
      |||||||| |||||||||||||||||||||||||| |||||||||||  |
seq2  GGCCAGGGAACCATGGGACCATCATCGTACGCTCT-GGACCATCTCAAGT  238

seq1  CAGGCACGGAGAAACTCGTTCCCTTC-TCACT-GTGTTCTACTGGCATTG  294
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  CAGGCACGGAGAAACTCGTTCCCTTCTTCACTGGTGTTCTACTGGCATTG  288

seq1  TTAAAACCGTCTGACCAAAAGCATCTTAGAAGAGGAAAAGATTTATATGG  344
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAAAAACCGTCTGACCAAAAGCATCTAAGAAGAGGAAAAGATTTATATGG  338

seq1  CTTTCACTTCCAGGTCATAGTTCATCCCTGAGGGAAGTC-AAGTCAGGAG  393
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  CTTTCACTTTCAGGTCATAGTTCATCCCTGAGGGAAGTCAAAGTCAGGAG  388

seq1  CCTGAAGGCAAGCCTGCTTG-CCAGTCAGCATGTATTACCTCT-AACTAG  441
      ||  |||||||||||||||| |||||||||||||||||||||| ||||||
seq2  CCGAAAGGCAAGCCTGCTTGCCCAGTCAGCATGTATTACCTCTAAACTAG  438

seq1  AGAACTCACTTGTGGGGCCCACACTCACTCACAGCC-AAGGGAGTATGAC  490
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGAACTCACTTGTGGGGCCCACACTCACTCACAGCCAAAGGGAGTATGAC  488

seq1  AGGAACATTGCATACCGGCTCATTCGCAGCTTCTGCTCAGCTAGCTTTTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACATTGCATACCGGCTCATTCGCAGCTTCTGCTCAGCTAGCTTTTT  538

seq1  TATACAGCCCATGACTGCTTATGTAGGAAATGGTGTTGCCTGCAGTGGGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGCCCATGACTGCTTATGTAGGAAATGGTGTTGCCTGCAGTGGGC  588

seq1  CAGGCCAATGAATAGTCAAGACAACCCCCCATCCCCTACAGACAGGCCAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAATGAATAGTCAAGACAACCCCCCATCCCCTACAGACAGGCCAG  638

seq1  CCTTCTCTAGTCAATTTCCTCCCTTGAGACTCCCTTCTCAGATTAAGATA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTAGTCAATTTCCTCCCTTGAGACTCCCTTCTCAGATTAAGATA  688

seq1  GGCTGGGTCAAGCTCATTCCAAAGTGTTAGCTTTCGGTGATAACACGCCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGTCAAGCTCATTCCAAAGTGTTAGCTTTCGGTGATAACACGCCA  738

seq1  ACCCTCACACTGCCTTGTATTTTCCAGAGTTCATGCTTGTAACACGTGCC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCACACTGCCTTGTATTTTCCAGAGTTCATGCTTGTAACACGTGCC  788

seq1  TCTAGAAAGAGGCAGTAGTTACATCAGACACAGAACATCATCTCTTGGGG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAGAGGCAGTAGTTACATCAGACACAGAACATCATCTCTTGGGG  838

seq1  GTGGGGAGATGTATATAGATGTTCTTGTAACCCTAAGATCTCTCAAGATT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAGATGTATATAGATGTTCTTGTAACCCTAAGATCTCTCAAGATT  888

seq1  ATATTTTCTTCCCTGGGATTTCTTGCCGCCCTGTAACAGGTATCACCACA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTTCCCTGGGATTTCTTGCCGCCCTGTAACAGGTATCACCACA  938

seq1  GCTGGAAGACAATGGCCAAGAAATTGATGAGGGCAGAGACCCCACCAGAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGACAATGGCCAAGAAATTGATGAGGGCAGAGACCCCACCAGAA  988

seq1  GTCCTGAAGAGGACATTACAACTGAAGGCGGGGGCGGATCTGAAGGGGAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAAGAGGACATTACAACTGAAGGCGGGGGCGGATCTGAAGGGGAA  1038

seq1  ATGATGGATGCTGAGAAAGTCAGCACGGATGGGGAAGCCATCTCTGAAGG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGATGCTGAGAAAGTCAGCACGGATGGGGAAGCCATCTCTGAAGG  1088

seq1  AGAAGTGGGGTCCAATGGAGAGACTCCCCCAGAAACAGAAGTGGAATTCA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGGGTCCAATGGAGAGACTCCCCCAGAAACAGAAGTGGAATTCA  1138

seq1  TTGGAGAGACCGCTCCAGACACAGATGTGGAATTC  1175
      |||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGACCGCTCCAGACACAGATGTGGAATTC  1173

seq1: chr11_118956877_118957970
seq2: B6Ng01-088I02.g_68_1148

seq1  GAATTCTAAAGACAGCCGCAGCTGTTAAGTACACAGAGACAGGCTGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGACAGCCGCAGCTGTTAAGTACACAGAGACAGGCTGAGGA  50

seq1  TTCTCTCACACACTGGGCTATAGTGGCTTTCTTCTTCTTGTTTTCCTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCACACACTGGGCTATAGTGGCTTTCTTCTTCTTGTTTTCCTACC  100

seq1  AAAGGTACGTTCCCGTTTGTGCCTGCCTTCTGCCTTTTTTCCCCAAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTACGTTCCCGTTTGTGCCTGCCTTCTGCCTTTTTTCCCCAAATAG  150

seq1  ATCTTGACAGTCAGACACAGATTCTATGCTGTGTGGAGTTGAGCTGGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGACAGTCAGACACAGATTCTATGCTGTGTGGAGTTGAGCTGGGCC  200

seq1  CAGTTTTTTTTTTTTCTTCACTAGCTCTTCAGGCTGACCCAGGGGTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTTTTTTTTCTTCACTAGCTCTTCAGGCTGACCCAGGGGTTGGA  250

seq1  GTTATGCCTGTGTTCTGACTCTCAGGGGTTGAAGGGTCGGTGAGGAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCCTGTGTTCTGACTCTCAGGGGTTGAAGGGTCGGTGAGGAAGCA  300

seq1  CCTGGGTGTGTCCTGTAGCATGCATCCCGTGCTCCAGGCAGCCCTGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTGTGTCCTGTAGCATGCATCCCGTGCTCCAGGCAGCCCTGCTCC  350

seq1  TCAGATAAAAAAGGGCGGCCATTTGTGGACACAGCCCACAGAGCCCGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAAAAAAGGGCGGCCATTTGTGGACACAGCCCACAGAGCCCGCTC  400

seq1  CAATGCTCTGAGCGACATTGATTAGTCACTGCAGTCTCCTCATTAGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTCTGAGCGACATTGATTAGTCACTGCAGTCTCCTCATTAGAGGC  450

seq1  CTGATCAGTAGCAATATACGTCAGTGACTTCTCCCTCAGTGAGCTCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCAGTAGCAATATACGTCAGTGACTTCTCCCTCAGTGAGCTCCTCT  500

seq1  GGCCCTCAGATGCCACCTCAACGGCAGCCTGGCACTAAAGCTGAGCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCAGATGCCACCTCAACGGCAGCCTGGCACTAAAGCTGAGCATCT  550

seq1  AAGTCTGGCAAGCACAGTGAGAGGCTTTATTGAGAGGTCTCCGGGCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGGCAAGCACAGTGAGAGGCTTTATTGAGAGGTCTCCGGGCCTGG  600

seq1  GGATGGTGGGGACACAAATGGCCCCCACATTATGCTCCTGCTTGGCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTGGGGACACAAATGGCCCCCACATTATGCTCCTGCTTGGCCCTG  650

seq1  TCCTCTTCCCCCTCCTCAGGAGAGTGAGGAGGCTCTGGAGGTGCCTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCCCCCTCCTCAGGAGAGTGAGGAGGCTCTGGAGGTGCCTTTAA  700

seq1  GGCACAGTATCACCACGATGTTGGTCGCAGCGCGCTTGAGGAACCGGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGTATCACCACGATGTTGGTCGCAGCGCGCTTGAGGAACCGGGCT  750

seq1  TCAGGTTGCCTAGGTGAATTTGTCAATAGAATATCGAACAGGCCTGGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTGCCTAGGTGAATTTGTCAATAGAATATCGAACAGGCCTGGGCT  800

seq1  CAGCCGCCACAATGGTTTGTTTCAAGCAGCCGGCCTGTAGTGCTCCTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGCCACAATGGTTTGTTTCAAGCAGCCGGCCTGTAGTGCTCCTCAC  850

seq1  ACTGTGGGGAGGACCACAGGGTCCTAGCTGGGCTAAGGGATCACAACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGGGAGGACCACAGGGTCCTAGCTGGGCTAAGGGATCACAACAAA  900

seq1  AGGCAAAAATAAAACCATGCCCCAGACTCCAGAAGCCCACTGGAGACCTC  950
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGCAAAAATAAAACCATGCCCCAGACTCCAG-AGCCCACTGGAGACCTC  949

seq1  CCTCTTACAAGCTCCCCAGCCCCACCCTCAGTCCCACCCCTGTTATAATG  1000
      |||| ||| ||||||||||||||||||||||||||||||||| ||| |||
seq2  CCTC-TAC-AGCTCCCCAGCCCCACCCTCAGTCCCACCCCTG-TAT-ATG  995

seq1  ACTCAGTGCCACAGAAGGATCATCACGGCCCCCTGGGACCCACTCAGATG  1050
      |||||||||||||| | ||||||||||| ||||||||| |||||||||||
seq2  ACTCAGTGCCACAG-ATGATCATCACGG-CCCCTGGGA-CCACTCAGATG  1042

seq1  CTCAAAATCTATCTATCCACCTTCTTGGAATCTGACCATCCATT  1094
      |||  |||||||| |||||||||||||| ||| || ||||||||
seq2  CTC--AATCTATCCATCCACCTTCTTGG-ATC-GA-CATCCATT  1081