BAC Information

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BAC

Clone NameB6Ng01-089I11
Chromosome11 (Build37)
Map Location 41,746,855 - 41,869,546
singlet/doubletdoublet
Overlap geneGabrg2
Upstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292
Downstream geneGabra1, Gabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089I11.bB6Ng01-089I11.g
ACCDH902084DH902085
length1,1161,109
definitionDH902084|Mus musculus domesticus DNA, BAC clone: B6Ng01-089I11, 5' end.DH902085|Mus musculus domesticus DNA, BAC clone: B6Ng01-089I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,868,279 - 41,869,546)(41,746,855 - 41,747,965)
sequence
gaattctctttcctcaaaatttcacaggactgttttgtccctttcagacc
ctatcttgaaactgcactgcaatacacactgccgggcaccccgttgatca
atcatcctgttggataatattaccttaagacatttataaagttaatagtg
cattaatatctgtctttacaccaaaaaacaagccttctctaatgtcaatt
agctaagggtgcttctactgtatccccacaactcaagttgcgaaggacat
attggaagggcacatcaatgcctctgagggccaaatcttcacatccaccc
gcatgtgtacccaataaaaaaggaacacagacaaacaagaagcagagaat
gccagatgaagttcaaaactgtcttgcccttgagtcactacacagcacta
ttagaaccaaacagaacaactcactctatcactcatgagttagattgatg
tgtcgccacttttcaggttatagtggaatgggaccagggctactgtataa
aatgtaaccctaggactgtggttttcaacctgtgggtcatgacctctttg
gggtgtcaaacagccctttcacagggctcacctcagaccattagagaact
ccgatattaatataatgatccacaaaagcagtaaaattacagttatgatg
tagcaacaaaaataatttcacgtttggggggtcactgcaacatgagagac
tatattaacgggttacattaggaagattgagagccactggcctgtggagt
gacaaaggtaaagaaaaacgctgctctctgctctcaattaatctggtaat
tgagggtactctgcctccagatgtgataggaggcagagataagccaaata
gtgtattattagcctatcttctttcaagtgaaagggatgtttagagtaag
aaaatagcaatatcgcctcaatagctaatcaattttttttcattgaatga
atttgttttctgtctgcttactgcaaatgacaaagggagatagagataag
aaaggggtttccctaagtttgcttaagcagataacttattttctggttca
atgatttcatgctaaagcaagctagcatttgggcttgttggtgagtgtga
gcacgaaacaagtaga
gaattctttcactcaagaagctttctgactcatgattgggatatttttaa
gatagctgctaaagagatagccttccccagggaagaaaacacaaatttgt
tctaataccaagttgtttgctctcaaatcatgcatacaactagcattgta
taggccgagcaggttatttataggtatgtaacacacacacacacacatac
gcacgcacgcacgaacacatgcacgcacgcacgcacgcacgcatgcatgc
acacaagcatgcatgcatgcacacaagcacatataggtatatataaatgt
gtaataatgattactgaaaagactgaccacagatttgataaagagcaaaa
agaggaatatgagaggggttggaaggaaggaagtgaagggaaaaatattg
taattacataaaaataaataagaaaaaatcaccccccacacagagttctg
tgtaaatgatgacatattttaggcaattagtttcatagagcttaacttct
ctccttaattttgtaggaaaacacatgactatcagaagtactataattta
attccaacttagctttacataaagctggataaataacttctcctctctac
ttctctttactctttctaaaatttacaaattcagtcagatgatagatttc
gtgaaaatagtacataaatattgattatattcttagtagctttgtgtcat
tttgatatttaagttggcgcatttggaaaacatgtcaaattactaatgaa
agttttaaaaaatatttagttttaaatgtagaaataaataaaaccacttg
gcagaggagaattagaaaccagctttttaaatttatttttttaagtttga
tgttggagtcttctcccatggaatactagtcatcctccccacttagacct
ttggtaaagataacagagatgggtttctgtagagtgggtagaatggcaca
gaggtgaaacagtcctaatggaagaagttgaatgtttctatcatgggttt
ccttttcctaaagtggaaacattcaacgttaaaggtcttctgatccttaa
caccaggtggtgggtttatgccttgttggatttacctgaggaggaatcta
ttgcatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41868279_41869546
seq2: B6Ng01-089I11.b_44_1159 (reverse)

seq1  TCTACTTGTTTGTCTTTTCTAGCACAGAAGCCTTGCTACAAAGAAGCAAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAATGGAAAGCCAGCCCTAAGACCAGAGCTGATGGGCGGCTGGAGGAGAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GCACCAGGCCTGCTTTCATCTGGCTTTTTGACACACGTTAACTCTTACTT  150
                                                || |||||
seq2  ------------------------------------------TC-TACTT  7

seq1  GTTTCTGTGGCCTTCACACCTCACCAACAAGCCCCAAATGCTAGCTTGCT  200
      ||||| |||    ||||| |||||||||||| ||||||||||||||||||
seq2  GTTTC-GTG---CTCACA-CTCACCAACAAG-CCCAAATGCTAGCTTGCT  51

seq1  TTAGCATGAAACCATTGGACCAGAAAATAGGTTATTTGCTTTAAGCAAAC  250
      ||||||||||| ||||| ||||||||||| ||||| ||| ||||||||||
seq2  TTAGCATGAAATCATTGAACCAGAAAATAAGTTATCTGC-TTAAGCAAAC  100

seq1  CTAGGAAAACCCC-TTCTTATCTCTATCTCCCCTTTGTCATTTGCAGTTA  299
       |||| ||||||| ||||||||||||||| ||||||||||||||||| ||
seq2  TTAGGGAAACCCCTTTCTTATCTCTATCT-CCCTTTGTCATTTGCAG-TA  148

seq1  AGCAGACAGAAAACAAATTCATTCAATGAAAAAAAAATTGATTAGCTATT  349
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCAGACAGAAAACAAATTCATTCAATG-AAAAAAAATTGATTAGCTATT  197

seq1  GAGGCGATATTGCTATTTTCTTACTCTAAACATCCCTTTCACTTGAAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGATATTGCTATTTTCTTACTCTAAACATCCCTTTCACTTGAAAGA  247

seq1  AGATAGGCTAATAATACACTATTTGGCTTATCTCTGCCTCCTATCACATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGCTAATAATACACTATTTGGCTTATCTCTGCCTCCTATCACATC  297

seq1  TGGAGGCAGAGTACCCTCAATTACCAGATTAATTGAGAGCAGAGAGCAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCAGAGTACCCTCAATTACCAGATTAATTGAGAGCAGAGAGCAGC  347

seq1  GTTTTTCTTTACCTTTGTCACTCCACAGGCCAGTGGCTCTCAATCTTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTTTACCTTTGTCACTCCACAGGCCAGTGGCTCTCAATCTTCCT  397

seq1  AATGTAACCCGTTAATATAGTCTCTCATGTTGCAGTGACCCCCCAAACGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAACCCGTTAATATAGTCTCTCATGTTGCAGTGACCCCCCAAACGT  447

seq1  GAAATTATTTTTGTTGCTACATCATAACTGTAATTTTACTGCTTTTGTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATTTTTGTTGCTACATCATAACTGTAATTTTACTGCTTTTGTGG  497

seq1  ATCATTATATTAATATCGGAGTTCTCTAATGGTCTGAGGTGAGCCCTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATATTAATATCGGAGTTCTCTAATGGTCTGAGGTGAGCCCTGTG  547

seq1  AAAGGGCTGTTTGACACCCCAAAGAGGTCATGACCCACAGGTTGAAAACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCTGTTTGACACCCCAAAGAGGTCATGACCCACAGGTTGAAAACC  597

seq1  ACAGTCCTAGGGTTACATTTTATACAGTAGCCCTGGTCCCATTCCACTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCTAGGGTTACATTTTATACAGTAGCCCTGGTCCCATTCCACTAT  647

seq1  AACCTGAAAAGTGGCGACACATCAATCTAACTCATGAGTGATAGAGTGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAAAAGTGGCGACACATCAATCTAACTCATGAGTGATAGAGTGAG  697

seq1  TTGTTCTGTTTGGTTCTAATAGTGCTGTGTAGTGACTCAAGGGCAAGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGTTTGGTTCTAATAGTGCTGTGTAGTGACTCAAGGGCAAGACA  747

seq1  GTTTTGAACTTCATCTGGCATTCTCTGCTTCTTGTTTGTCTGTGTTCCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAACTTCATCTGGCATTCTCTGCTTCTTGTTTGTCTGTGTTCCTT  797

seq1  TTTTATTGGGTACACATGCGGGTGGATGTGAAGATTTGGCCCTCAGAGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGGGTACACATGCGGGTGGATGTGAAGATTTGGCCCTCAGAGGC  847

seq1  ATTGATGTGCCCTTCCAATATGTCCTTCGCAACTTGAGTTGTGGGGATAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGTGCCCTTCCAATATGTCCTTCGCAACTTGAGTTGTGGGGATAC  897

seq1  AGTAGAAGCACCCTTAGCTAATTGACATTAGAGAAGGCTTGTTTTTTGGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAGCACCCTTAGCTAATTGACATTAGAGAAGGCTTGTTTTTTGGT  947

seq1  GTAAAGACAGATATTAATGCACTATTAACTTTATAAATGTCTTAAGGTAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGACAGATATTAATGCACTATTAACTTTATAAATGTCTTAAGGTAA  997

seq1  TATTATCCAACAGGATGATTGATCAACGGGGTGCCCGGCAGTGTGTATTG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCCAACAGGATGATTGATCAACGGGGTGCCCGGCAGTGTGTATTG  1047

seq1  CAGTGCAGTTTCAAGATAGGGTCTGAAAGGGACAAAACAGTCCTGTGAAA  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGTTTCAAGATAGGGTCTGAAAGGGACAAAACAGTCCTGTGAAA  1097

seq1  TTTTGAGGAAAGAGAATTC  1268
      |||||||||||||||||||
seq2  TTTTGAGGAAAGAGAATTC  1116

seq1: chr11_41746855_41747965
seq2: B6Ng01-089I11.g_67_1175

seq1  GAATTCTTTCACTCAAGAAGCTTTCTGACTCATGATTGGGATATTTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCACTCAAGAAGCTTTCTGACTCATGATTGGGATATTTTTAA  50

seq1  GATAGCTGCTAAAGAGATAGCCTTCCCCAGGGAAGAAAACACAAATTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTGCTAAAGAGATAGCCTTCCCCAGGGAAGAAAACACAAATTTGT  100

seq1  TCTAATACCAAGTTGTTTGCTCTCAAATCATGCATACAACTAGCATTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATACCAAGTTGTTTGCTCTCAAATCATGCATACAACTAGCATTGTA  150

seq1  TAGGCCGAGCAGGTTATTTATAGGTATGTAACACACACACACACACATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCGAGCAGGTTATTTATAGGTATGTAACACACACACACACACATAC  200

seq1  GCACGCACGCACGAACACATGCACGCACGCACGCACGCACGCATGCATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCACGCACGAACACATGCACGCACGCACGCACGCACGCATGCATGC  250

seq1  ACACAAGCATGCATGCATGCACACAAGCACATATAGGTATATATAAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGCATGCATGCATGCACACAAGCACATATAGGTATATATAAATGT  300

seq1  GTAATAATGATTACTGAAAAGACTGACCACAGATTTGATAAAGAGCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAATGATTACTGAAAAGACTGACCACAGATTTGATAAAGAGCAAAA  350

seq1  AGAGGAATATGAGAGGGGTTGGAAGGAAGGAAGTGAAGGGAAAAATATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATATGAGAGGGGTTGGAAGGAAGGAAGTGAAGGGAAAAATATTG  400

seq1  TAATTACATAAAAATAAATAAGAAAAAATCACCCCCCACACAGAGTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACATAAAAATAAATAAGAAAAAATCACCCCCCACACAGAGTTCTG  450

seq1  TGTAAATGATGACATATTTTAGGCAATTAGTTTCATAGAGCTTAACTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGATGACATATTTTAGGCAATTAGTTTCATAGAGCTTAACTTCT  500

seq1  CTCCTTAATTTTGTAGGAAAACACATGACTATCAGAAGTACTATAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAATTTTGTAGGAAAACACATGACTATCAGAAGTACTATAATTTA  550

seq1  ATTCCAACTTAGCTTTACATAAAGCTGGATAAATAACTTCTCCTCTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAACTTAGCTTTACATAAAGCTGGATAAATAACTTCTCCTCTCTAC  600

seq1  TTCTCTTTACTCTTTCTAAAATTTACAAATTCAGTCAGATGATAGATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTACTCTTTCTAAAATTTACAAATTCAGTCAGATGATAGATTTC  650

seq1  GTGAAAATAGTACATAAATATTGATTATATTCTTAGTAGCTTTGTGTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATAGTACATAAATATTGATTATATTCTTAGTAGCTTTGTGTCAT  700

seq1  TTTGATATTTAAGTTGGCGCATTTGGAAAACATGTCAAATTACTAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATATTTAAGTTGGCGCATTTGGAAAACATGTCAAATTACTAATGAA  750

seq1  AGTTTTAAAAAATATTTAGTTTTAAATGTAGAAATAAATAAAACCACTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAAAAATATTTAGTTTTAAATGTAGAAATAAATAAAACCACTTG  800

seq1  GCAGAGGAGAATTAGAAACCAGCTTTTTAAATTTATTTTTTTAAGTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAGAATTAGAAACCAGCTTTTTAAATTTATTTTTTTAAGTTTGA  850

seq1  TGTTGGAGTCTTCTCCCATGGAATACTAGTCATCCTCCCCACTTAGACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAGTCTTCTCCCATGGAATACTAGTCATCCTCCCCACTTAGACCT  900

seq1  TTGGTAAAGATAACAGAGATGGGTTTCTGTAGAGT-GGTAGAATGGCACA  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGGTAAAGATAACAGAGATGGGTTTCTGTAGAGTGGGTAGAATGGCACA  950

seq1  GAGGTGAAACAGTCCTAATGGAAGAAGGTGAATGTTTCTATCAATGGTTT  999
      ||||||||||||||||||||||||||| |||||||||||||||  |||||
seq2  GAGGTGAAACAGTCCTAATGGAAGAAGTTGAATGTTTCTATCATGGGTTT  1000

seq1  CCCTTTCCTAAAGGTGAAAACATTCAACGTTAAAGGTCTTCTGATCTCTA  1049
      || ||||||||| ||| ||||||||||||||||||||||||||||| || 
seq2  CCTTTTCCTAAA-GTGGAAACATTCAACGTTAAAGGTCTTCTGATC-CTT  1048

seq1  AACACCAGGT-GTGGG-TTATGCCTTGTTTGGATTTACACTGAGGAGGAA  1097
      |||||||||| ||||| |||||||||| |||||||||| |||||||||||
seq2  AACACCAGGTGGTGGGTTTATGCCTTG-TTGGATTTAC-CTGAGGAGGAA  1096

seq1  TCTATTTGCATTTT  1111
      |||| |||||||||
seq2  TCTA-TTGCATTTT  1109